2KGAA

Nmr solution structures of hexanoyl acp (a non natural intermediate) from the actinorhodin polyketide synthase in streptomyces coelicolor
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
86
structure length
86
Chain Sequence
MATLLTTDDLRRALVESAGETDGTDLSGDFLDLRFEDIGYDSLALMETAARLESRYGVSIPDDVAGRVDTPRELLDLINGALAEAA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Biosynthetic protein
molecule keywords Actinorhodin polyketide synthase acyl carrier protein
publication title Probing the Interactions of Early Polyketide Intermediates with the Actinorhodin ACP from S. coelicolor A3(2).
pubmed doi rcsb
source organism Streptomyces coelicolor
total genus 24
structure length 86
sequence length 86
ec nomenclature
pdb deposition date 2009-03-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00550 PP-binding Phosphopantetheine attachment site
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.10 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A ACP-like 2kgaA00
2MR8A 3GZMA 1X3OA 2CQ8A 2MR7A 4NEOA 2KW2A 2LKIA 2L0QA 2LMLA 3CE7A 2KOPA 2L9FA 1L0HA 3EJEA 4H2WC 2MVVA 2K2QA 2XZ0D 3EJBA 2EHTA 2JGPA 2AVAA 2AFDA 4BPHA 2KOSA 3RG2A 1OR5A 2PNGA 2N6ZA 2KORA 4PXHB 2KG8A 2N5HA 2FQ1A 2QNWA 2KG6A 2LIWA 5CZDB 2N6YA 2KR5A 2N98A 2KG9A 2GDYA 2KGDA 2FQ0A 1AF8A 5EJDA 1F80D 2L22A 2MD9A 4H2YC 2KGCA 2KGEA 2LOLA 3GZLA 2KOQA 1L0IA 2FADA 5KP6B 2KGAA 2MVUA 2CNRA 2DNWA 3NY7B 2FHSC 2N5IA 1NQ4A 2VSQA 2M5RA 2LIUA 2CG5B 3EJDA 2LTEA 4IZ6A 1ACPA 2FVFA 1VKUA 3LMOA 2K0XA 2KOOA 2GDXA 4CA3A 1DV5A 2JQ4A 2FQ2A 2LPKA 1DNYA 2FVEA 5HVCA 2CGQA 5KP7B 2K93A 2AFEA 2X2BA 4BPFA 2GDWA 2MY5A 4BPGA 4MRTC 4DG9A 1HY8A 2FAEA 2JU2A 2N50A 2FVAA 2L4BA 2K92A 2KWLA 4PWVB 2K0YA 4HKGA 4R0MA 1T8KA 1HQBA 2ROQA 4H2XC 2K94A 2FACA 5KP8B 2MF4A 2LL8A 2AF8A 2XZ1C 1KLPA 2JU1A 2EHSA 5HV8A
chains in the Genus database with same CATH superfamily
3H4EA 4QNBA 2Z44A 2GZGA 2KW2A 1M1KQ 1E0HA 1EIAA 3EJEA 1M90Q 3P05A 2XZ0D 2EHTA 2JGPA 2AVAA 4BPHA 2LF4A 3RG2A 1OR5A 4GR2A 2KORA 2FQ1A 4U0FA 2LIWA 5CZDB 2KR5A 1NJIQ 2KG9A 2FQ0A 1GXGA 1VQ6P 1F80D 1RO2A 2JYLA 1QRJA 2LOLA 3CCJP 1KQSO 2KOQA 1UNKA 2KGAA 1N8RQ 1ZNVA 4IZ6A 1ACPA 2OTJP 2PENA 3CD6P 2E1MA 3HYBA 1M6NA 2JO0A 1YIJP 1DNYA 4UHPB 1FR2A 2K93A 2VLPA 4M0IA 1YJ9P 5DCKA 1K73Q 1UJZA 3M1MA 4BPGA 4MRTC 4XROA 2PEOA 4DG9A 3G29A 1HY8A 1M6EX 1VHNA 2FAEA 2N50A 2K92A 3HZQA 5EW5E 2FACA 2LL8A 4XFXA 2EG5A 2QA4P 4XRQA 2AF8A 1VQLP 2XZ1C 2JU1A 3OW2O 3CPWO 1X3OA 2QEXP 2LKIA 2LMLA 5F2OA 2KODA 2K2QA 1IMQA 3GJNA 3EJBA 3Q20A 1IMPA 2M8PA 1KC8Q 2M8NA 2KOSA 2XXMA 2N6ZA 4PXHB 1VQ9P 2QNWA 2N6YA 1VQNP 1Q82Q 2BUOA 4XFZA 1CEIA 5BS1A 2EFJA 2JAZA 2OARA 1QVGO 3DS1A 4U0EA 2KGEA 2NO8A 5KP6B 2MVUA 3NY7B 2FHSC 1VQOP 3CMAP 1NQ4A 2M5RA 2PEIA 3EJDA 4F37A 3H0DA 2XV6A 3LMOA 1VQPP 3MGEA 2KOOA 1DV5A 3I55P 2EIAA 2WPTA 3CCRP 2DGYA 5KP7B 3G28A 2VLNA 4BPFA 2GDWA 2MY5A 1Q81Q 1K8AQ 4GR6A 2KWLA 4R0MA 1T8KA 4U0DA 1HQBA 2JYGA 3G71P 1GXHA 1KLPA 1Q7YQ 2MR8A 3GZMA 4U0AA 2MR7A 4NEOA 2L0QA 2KOPA 1AYIA 1L0HA 3DS4A 4H2WC 1QVFO 3GKLC 3VRLC 2AFDA 3G21A 1GPJA 3E2DA 1M74A 2PNGA 1K9MQ 2KG8A 2N5HA 2KG6A 3I56P 2GDYA 1AF8A 5EJDA 3G4SP 2L22A 1K30A 2GZJA 5HGNA 2BHVA 3NTEA 3CCVP 1VQ5P 2MD9A 2KGCA 1JJ2O 3CCSP 4IPYA 2DNWA 1VQMP 1AUMA 2CG5B 2LTEA 5I4TG 2FVFA 2GZFA 1VKUA 2K0XA 4CA3A 1VQ7P 2JQ4A 2FQ2A 4U0CA 2CGQA 5F2KA 1BAJA 1KD1Q 1ZMBA 3U43A 2X2BA 2GZIA 1VQ4P 2K0DX 1VQ8P 3CC7P 3RG6C 2FVAA 3DS0A 3DTJA 4PWVB 2ROQA 2K94A 4PH0A 1EOQA 5KP8B 2ERHA 2M8LA 1D1DA 2EHSA 2CWOA 2PY8A 1IUQA 2JB0A 2CQ8A 1W2BO 3CE7A 4U0BA 2L9FA 1YJNP 1E6JP 2MVVA 2OTLP 2PEKA 1YJWP 3G6EP 1A43A 1RO0A 4PH1A 1MZ8A 3DPHA 2N98A 2KGDA 2PEMA 2ONTA 4WYMA 2GYKA 5HGOA 1Q86Q 2PEJA 1A8OA 4H2YC 3CXCO 3GZLA 2VLQA 1L0IA 3G1GA 2XT1A 5F2NA 2FADA 2P9XA 5HGMA 2CNRA 1BXIA 2N5IA 2VSQA 3G0VA 2LIUA 2PEQA 3CCEP 2K5XA 1VQKP 2GDXA 1EMVA 4XFYA 3CCMP 3WBHA 2LPKA 2FVEA 3CCQP 3G26A 7CEIA 5HVCA 3DS5A 3CCLP 1YHQP 4COCA 3CMEP 4COPA 3H47A 1RNIA 2Z46A 5BS2A 5HGLA 3CC4P 2AFEA 2JBGA 3CCUP 2JU2A 2L4BA 2GZEA 2L6EA 3CC2P 1YITP 3B4QA 3B5IA 2K0YA 4HKGA 1S72P 2VLOA 5JPAA 3G1IA 3DS3A 4H2XC 1Z6MA 2MF4A 4QKOA 3DS2A 1YI2P 2Z45A 5HV8A 3LRYA
chains in the Genus database with same CATH topology
2MR8A 3GZMA 1X3OA 2CQ8A 2MR7A 4NEOA 2KW2A 2LKIA 2L0QA 2LMLA 3CE7A 2KOPA 2L9FA 1L0HA 3EJEA 4H2WC 2MVVA 2K2QA 2XZ0D 3EJBA 2EHTA 2JGPA 2AVAA 2AFDA 4BPHA 2KOSA 3RG2A 1OR5A 2PNGA 2N6ZA 2KORA 4PXHB 2KG8A 2N5HA 2FQ1A 2QNWA 2KG6A 2LIWA 5CZDB 2N6YA 2KR5A 2N98A 2KG9A 2GDYA 2KGDA 2FQ0A 1AF8A 5EJDA 1F80D 2L22A 2MD9A 4H2YC 2KGCA 2KGEA 2LOLA 3GZLA 2KOQA 1L0IA 2FADA 5KP6B 2KGAA 2MVUA 2CNRA 2DNWA 3NY7B 2FHSC 2N5IA 1NQ4A 2VSQA 2M5RA 2LIUA 2CG5B 3EJDA 2LTEA 4IZ6A 1ACPA 2FVFA 1VKUA 3LMOA 2K0XA 2KOOA 2GDXA 4CA3A 1DV5A 2JQ4A 2FQ2A 2LPKA 1DNYA 2FVEA 5HVCA 2CGQA 5KP7B 2K93A 2AFEA 2X2BA 4BPFA 2GDWA 2MY5A 4BPGA 4MRTC 4DG9A 1HY8A 2FAEA 2JU2A 2N50A 2FVAA 2L4BA 2K92A 2KWLA 4PWVB 2K0YA 4HKGA 4R0MA 1T8KA 1HQBA 2ROQA 4H2XC 2K94A 2FACA 5KP8B 2MF4A 2LL8A 2AF8A 2XZ1C 1KLPA 2JU1A 2EHSA 5HV8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2MR8 A;  3GZM A;  1X3O A;  2CQ8 A;  2MR7 A;  4NEO A;  2KW2 A;  2LKI A;  2L0Q A;  2LML A;  3CE7 A;  2KOP A;  2L9F A;  1L0H A;  3EJE A;  4H2W C;  2MVV A;  2K2Q A;  2XZ0 D;  3EJB A;  2EHT A;  2JGP A;  2AVA A;  2AFD A;  4BPH A;  2KOS A;  3RG2 A;  1OR5 A;  2PNG A;  2N6Z A;  2KOR A;  4PXH B;  2KG8 A;  2N5H A;  2FQ1 A;  2QNW A;  2KG6 A;  2LIW A;  5CZD B;  2N6Y A;  2KR5 A;  2N98 A;  2KG9 A;  2GDY A;  2KGD A;  2FQ0 A;  1AF8 A;  5EJD A;  1F80 D;  2L22 A;  2MD9 A;  4H2Y C;  2KGC A;  2KGE A;  2LOL A;  3GZL A;  2KOQ A;  1L0I A;  2FAD A;  5KP6 B;  2KGA A;  2MVU A;  2CNR A;  2DNW A;  3NY7 B;  2FHS C;  2N5I A;  1NQ4 A;  2VSQ A;  2M5R A;  2LIU A;  2CG5 B;  3EJD A;  2LTE A;  4IZ6 A;  1ACP A;  2FVF A;  1VKU A;  3LMO A;  2K0X A;  2KOO A;  2GDX A;  4CA3 A;  1DV5 A;  2JQ4 A;  2FQ2 A;  2LPK A;  1DNY A;  2FVE A;  5HVC A;  2CGQ A;  5KP7 B;  2K93 A;  2AFE A;  2X2B A;  4BPF A;  2GDW A;  2MY5 A;  4BPG A;  4MRT C;  4DG9 A;  1HY8 A;  2FAE A;  2JU2 A;  2N50 A;  2FVA A;  2L4B A;  2K92 A;  2KWL A;  4PWV B;  2K0Y A;  4HKG A;  4R0M A;  1T8K A;  1HQB A;  2ROQ A;  4H2X C;  2K94 A;  2FAC A;  5KP8 B;  2MF4 A;  2LL8 A;  2AF8 A;  2XZ1 C;  1KLP A;  2JU1 A;  2EHS A;  5HV8 A; 
#chains in the Genus database with same CATH topology
 3H4E A;  4QNB A;  2Z44 A;  2GZG A;  2KW2 A;  1M1K Q;  1E0H A;  1EIA A;  3EJE A;  1M90 Q;  3P05 A;  2XZ0 D;  2EHT A;  2JGP A;  2AVA A;  4BPH A;  2LF4 A;  3RG2 A;  1OR5 A;  4GR2 A;  2KOR A;  2FQ1 A;  4U0F A;  2LIW A;  5CZD B;  2KR5 A;  1NJI Q;  2KG9 A;  2FQ0 A;  1GXG A;  1VQ6 P;  1F80 D;  1RO2 A;  2JYL A;  1QRJ A;  2LOL A;  3CCJ P;  1KQS O;  2KOQ A;  1UNK A;  2KGA A;  1N8R Q;  1ZNV A;  4IZ6 A;  1ACP A;  2OTJ P;  2PEN A;  3CD6 P;  2E1M A;  3HYB A;  1M6N A;  2JO0 A;  1YIJ P;  1DNY A;  4UHP B;  1FR2 A;  2K93 A;  2VLP A;  4M0I A;  1YJ9 P;  5DCK A;  1K73 Q;  1UJZ A;  3M1M A;  4BPG A;  4MRT C;  4XRO A;  2PEO A;  4DG9 A;  3G29 A;  1HY8 A;  1M6E X;  1VHN A;  2FAE A;  2N50 A;  2K92 A;  3HZQ A;  5EW5 E;  2FAC A;  2LL8 A;  4XFX A;  2EG5 A;  2QA4 P;  4XRQ A;  2AF8 A;  1VQL P;  2XZ1 C;  2JU1 A;  3OW2 O;  3CPW O;  1X3O A;  2QEX P;  2LKI A;  2LML A;  5F2O A;  2KOD A;  2K2Q A;  1IMQ A;  3GJN A;  3EJB A;  3Q20 A;  1IMP A;  2M8P A;  1KC8 Q;  2M8N A;  2KOS A;  2XXM A;  2N6Z A;  4PXH B;  1VQ9 P;  2QNW A;  2N6Y A;  1VQN P;  1Q82 Q;  2BUO A;  4XFZ A;  1CEI A;  5BS1 A;  2EFJ A;  2JAZ A;  2OAR A;  1QVG O;  3DS1 A;  4U0E A;  2KGE A;  2NO8 A;  5KP6 B;  2MVU A;  3NY7 B;  2FHS C;  1VQO P;  3CMA P;  1NQ4 A;  2M5R A;  2PEI A;  3EJD A;  4F37 A;  3H0D A;  2XV6 A;  3LMO A;  1VQP P;  3MGE A;  2KOO A;  1DV5 A;  3I55 P;  2EIA A;  2WPT A;  3CCR P;  2DGY A;  5KP7 B;  3G28 A;  2VLN A;  4BPF A;  2GDW A;  2MY5 A;  1Q81 Q;  1K8A Q;  4GR6 A;  2KWL A;  4R0M A;  1T8K A;  4U0D A;  1HQB A;  2JYG A;  3G71 P;  1GXH A;  1KLP A;  1Q7Y Q;  2MR8 A;  3GZM A;  4U0A A;  2MR7 A;  4NEO A;  2L0Q A;  2KOP A;  1AYI A;  1L0H A;  3DS4 A;  4H2W C;  1QVF O;  3GKL C;  3VRL C;  2AFD A;  3G21 A;  1GPJ A;  3E2D A;  1M74 A;  2PNG A;  1K9M Q;  2KG8 A;  2N5H A;  2KG6 A;  3I56 P;  2GDY A;  1AF8 A;  5EJD A;  3G4S P;  2L22 A;  1K30 A;  2GZJ A;  5HGN A;  2BHV A;  3NTE A;  3CCV P;  1VQ5 P;  2MD9 A;  2KGC A;  1JJ2 O;  3CCS P;  4IPY A;  2DNW A;  1VQM P;  1AUM A;  2CG5 B;  2LTE A;  5I4T G;  2FVF A;  2GZF A;  1VKU A;  2K0X A;  4CA3 A;  1VQ7 P;  2JQ4 A;  2FQ2 A;  4U0C A;  2CGQ A;  5F2K A;  1BAJ A;  1KD1 Q;  1ZMB A;  3U43 A;  2X2B A;  2GZI A;  1VQ4 P;  2K0D X;  1VQ8 P;  3CC7 P;  3RG6 C;  2FVA A;  3DS0 A;  3DTJ A;  4PWV B;  2ROQ A;  2K94 A;  4PH0 A;  1EOQ A;  5KP8 B;  2ERH A;  2M8L A;  1D1D A;  2EHS A;  2CWO A;  2PY8 A;  1IUQ A;  2JB0 A;  2CQ8 A;  1W2B O;  3CE7 A;  4U0B A;  2L9F A;  1YJN P;  1E6J P;  2MVV A;  2OTL P;  2PEK A;  1YJW P;  3G6E P;  1A43 A;  1RO0 A;  4PH1 A;  1MZ8 A;  3DPH A;  2N98 A;  2KGD A;  2PEM A;  2ONT A;  4WYM A;  2GYK A;  5HGO A;  1Q86 Q;  2PEJ A;  1A8O A;  4H2Y C;  3CXC O;  3GZL A;  2VLQ A;  1L0I A;  3G1G A;  2XT1 A;  5F2N A;  2FAD A;  2P9X A;  5HGM A;  2CNR A;  1BXI A;  2N5I A;  2VSQ A;  3G0V A;  2LIU A;  2PEQ A;  3CCE P;  2K5X A;  1VQK P;  2GDX A;  1EMV A;  4XFY A;  3CCM P;  3WBH A;  2LPK A;  2FVE A;  3CCQ P;  3G26 A;  7CEI A;  5HVC A;  3DS5 A;  3CCL P;  1YHQ P;  4COC A;  3CME P;  4COP A;  3H47 A;  1RNI A;  2Z46 A;  5BS2 A;  5HGL A;  3CC4 P;  2AFE A;  2JBG A;  3CCU P;  2JU2 A;  2L4B A;  2GZE A;  2L6E A;  3CC2 P;  1YIT P;  3B4Q A;  3B5I A;  2K0Y A;  4HKG A;  1S72 P;  2VLO A;  5JPA A;  3G1I A;  3DS3 A;  4H2X C;  1Z6M A;  2MF4 A;  4QKO A;  3DS2 A;  1YI2 P;  2Z45 A;  5HV8 A;  3LRY A; 
#chains in the Genus database with same CATH homology
 2MR8 A;  3GZM A;  1X3O A;  2CQ8 A;  2MR7 A;  4NEO A;  2KW2 A;  2LKI A;  2L0Q A;  2LML A;  3CE7 A;  2KOP A;  2L9F A;  1L0H A;  3EJE A;  4H2W C;  2MVV A;  2K2Q A;  2XZ0 D;  3EJB A;  2EHT A;  2JGP A;  2AVA A;  2AFD A;  4BPH A;  2KOS A;  3RG2 A;  1OR5 A;  2PNG A;  2N6Z A;  2KOR A;  4PXH B;  2KG8 A;  2N5H A;  2FQ1 A;  2QNW A;  2KG6 A;  2LIW A;  5CZD B;  2N6Y A;  2KR5 A;  2N98 A;  2KG9 A;  2GDY A;  2KGD A;  2FQ0 A;  1AF8 A;  5EJD A;  1F80 D;  2L22 A;  2MD9 A;  4H2Y C;  2KGC A;  2KGE A;  2LOL A;  3GZL A;  2KOQ A;  1L0I A;  2FAD A;  5KP6 B;  2KGA A;  2MVU A;  2CNR A;  2DNW A;  3NY7 B;  2FHS C;  2N5I A;  1NQ4 A;  2VSQ A;  2M5R A;  2LIU A;  2CG5 B;  3EJD A;  2LTE A;  4IZ6 A;  1ACP A;  2FVF A;  1VKU A;  3LMO A;  2K0X A;  2KOO A;  2GDX A;  4CA3 A;  1DV5 A;  2JQ4 A;  2FQ2 A;  2LPK A;  1DNY A;  2FVE A;  5HVC A;  2CGQ A;  5KP7 B;  2K93 A;  2AFE A;  2X2B A;  4BPF A;  2GDW A;  2MY5 A;  4BPG A;  4MRT C;  4DG9 A;  1HY8 A;  2FAE A;  2JU2 A;  2N50 A;  2FVA A;  2L4B A;  2K92 A;  2KWL A;  4PWV B;  2K0Y A;  4HKG A;  4R0M A;  1T8K A;  1HQB A;  2ROQ A;  4H2X C;  2K94 A;  2FAC A;  5KP8 B;  2MF4 A;  2LL8 A;  2AF8 A;  2XZ1 C;  1KLP A;  2JU1 A;  2EHS A;  5HV8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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