2KJZA

Solution nmr structure of protein atc0852 from agrobacterium tumefaciens. northeast structural genomics consortium (nesg) target att2.
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
122
structure length
122
Chain Sequence
MTHPDFTILYVDNPPASTQFYKALLGVDPVESSPTFSLFVLANGMKLGLWSRHTVEPKASVTGGGGELAFRVENDAQVDETFAGWKASGVAMLQQPAKMEFGYTFTAADPDSHRLRVYAFAG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Unknown function
molecule keywords ATC0852
publication title Solution structure of protein ATC0852 from Agrobacterium tumefaciens
rcsb
source organism Agrobacterium tumefaciens
total genus 27
structure length 122
sequence length 122
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-06-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00903 Glyoxalase Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.720.110 Alpha Beta 2-Layer Sandwich Signal recognition particle alu RNA binding heterodimer, srp9/1 Signal recognition particle alu RNA binding heterodimer, srp9/1 2kjzA02
3.30.720.120 Alpha Beta 2-Layer Sandwich Signal recognition particle alu RNA binding heterodimer, srp9/1 Signal recognition particle alu RNA binding heterodimer, srp9/1 2kjzA01
1U7IA 3BT3A 3VCXA 3OMSA 2KJZA 3SK1A 3ITWA
chains in the Genus database with same CATH superfamily
1X4RA 4AY5A 1U7IA 1QMOE 3V3LA 3BT3A 2FJEB 4N3BA 2RSFA 2W9JA 4CDRA 1E8OB 2A90A 4N3AA 1UJRA 3SK1A 1JNZB 3TAXA 3TU3B 2DK6A 4XIFA 4UYKA 2FJAB 3VCXA 5BNWA 3OMSA 2X5GA 3PE3A 2FJBB 3PE4A 5AOXA 1JNRB 4GZ5A 1914A 4GZ3A 2K4NA 2X5TA 4UYKB 4UYJA 2KJZA 4AY6A 4GZ6A 4AKXB 4N39A 2X5HA 5C1DA 4GYYA 4XI9A 5AOXB 4GYWA 3GYXB 4UYJB 1E8OA 2FFGA 4N3CA 2FJDB 3ITWA
chains in the Genus database with same CATH topology
1X4RA 4AY5A 1U7IA 1QMOE 3V3LA 3BT3A 2FJEB 4N3BA 2RSFA 2W9JA 4CDRA 1E8OB 2A90A 4N3AA 1UJRA 3SK1A 1JNZB 3TAXA 3TU3B 2DK6A 4XIFA 4UYKA 2FJAB 3VCXA 5BNWA 3OMSA 2X5GA 3PE3A 2FJBB 3PE4A 5AOXA 1JNRB 4GZ5A 1914A 4GZ3A 2K4NA 2X5TA 4UYKB 4UYJA 2KJZA 4AY6A 4GZ6A 4AKXB 4N39A 2X5HA 5C1DA 4GYYA 4XI9A 5AOXB 4GYWA 3GYXB 4UYJB 1E8OA 2FFGA 4N3CA 2FJDB 3ITWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1U7I A;  3BT3 A;  3VCX A;  3OMS A;  2KJZ A;  3SK1 A;  3ITW A; 
#chains in the Genus database with same CATH topology
 1X4R A;  4AY5 A;  1U7I A;  1QMO E;  3V3L A;  3BT3 A;  2FJE B;  4N3B A;  2RSF A;  2W9J A;  4CDR A;  1E8O B;  2A90 A;  4N3A A;  1UJR A;  3SK1 A;  1JNZ B;  3TAX A;  3TU3 B;  2DK6 A;  4XIF A;  4UYK A;  2FJA B;  3VCX A;  5BNW A;  3OMS A;  2X5G A;  3PE3 A;  2FJB B;  3PE4 A;  5AOX A;  1JNR B;  4GZ5 A;  1914 A;  4GZ3 A;  2K4N A;  2X5T A;  4UYK B;  4UYJ A;  2KJZ A;  4AY6 A;  4GZ6 A;  4AKX B;  4N39 A;  2X5H A;  5C1D A;  4GYY A;  4XI9 A;  5AOX B;  4GYW A;  3GYX B;  4UYJ B;  1E8O A;  2FFG A;  4N3C A;  2FJD B;  3ITW A; 
#chains in the Genus database with same CATH homology
 1X4R A;  4AY5 A;  1U7I A;  1QMO E;  3V3L A;  3BT3 A;  2FJE B;  4N3B A;  2RSF A;  2W9J A;  4CDR A;  1E8O B;  2A90 A;  4N3A A;  1UJR A;  3SK1 A;  1JNZ B;  3TAX A;  3TU3 B;  2DK6 A;  4XIF A;  4UYK A;  2FJA B;  3VCX A;  5BNW A;  3OMS A;  2X5G A;  3PE3 A;  2FJB B;  3PE4 A;  5AOX A;  1JNR B;  4GZ5 A;  1914 A;  4GZ3 A;  2K4N A;  2X5T A;  4UYK B;  4UYJ A;  2KJZ A;  4AY6 A;  4GZ6 A;  4AKX B;  4N39 A;  2X5H A;  5C1D A;  4GYY A;  4XI9 A;  5AOX B;  4GYW A;  3GYX B;  4UYJ B;  1E8O A;  2FFG A;  4N3C A;  2FJD B;  3ITW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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