2KWBA

Minimal constraint solution nmr structure of translationally-controlled tumor protein (tctp) from c.elegans, northeast structural genomics consortium target wr73
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
183
structure length
183
Chain Sequence
MLIYKDIFTDDELSSDSFPMKLVDDLVYEFKGKHVVRKEGEIVLAGSNPSAEEGAEDDGSDEHVERGIDIVLNHKLVEMNCYEDASMFKAYIKKFMKNVIDHMEKNNRDKADVDAFKKKIQGWVVSLLAKDRFKNLAFFIGERAAEGAENGQVAIIEYRDVDGTEVPTLMLVKEAIIEEKCLE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Metal binding protein
molecule keywords Translationally-controlled tumor protein homolog
publication title Minimal Constraint Solution NMR Structure of Translationally-controlled tumor protein (TCTP) from C.elegans, Northeast Structural Genomics Consortium Target WR73
rcsb
source organism Caenorhabditis elegans
total genus 47
structure length 183
sequence length 183
ec nomenclature
pdb deposition date 2010-04-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00838 TCTP Translationally controlled tumour protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.150.10 Mainly Beta Beta Complex Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A 2kwbA00
2FU5A 3P3KA 1TXJA 1FWQA 2LOYA 1H7YA 2KWBA 1H6QA 1HXRA 2HR9A 1YZ1A 3EBMA
chains in the Genus database with same CATH superfamily
4AY2A 4V30A 3P3KA 4TZCA 3E0MA 2RMJA 2LOYA 3ZD7A 3ZD6A 2K8DA 2QFDA 3CEZA 2W4RA 3FACA 2HR9A 3HCJA 4CI2B 4A2XA 2FU5A 2KV1A 5F9HA 3GA3A 1FWQA 5F98A 3LRRA 4BPBA 5AMHA 4CI1B 2KWBA 1H6QA 4V2YA 4V2ZA 3HCIA 1HXRA 2RQBA 1YZ1A 2RQAA 3HCHA 2KZNA 3CXKA 3MAOA 3WX2A 3DJMA 1L1DA 3HCGA 4CI3B 3WX1A 4A2VA 4V31A 5F9FA 2QFBA 3OG8A 1TXJA 3E0OA 4TZUA 3NCUA 4TZ4C 2LVLA 1H7YA 5E3HA 3EQTA 3EBMA 3LRNA 2YKGA
chains in the Genus database with same CATH topology
4AY2A 3P3KA 2RMJA 2LOYA 3ZD7A 3ZD6A 2QFDA 2W4RA 3FACA 2HR9A 4A2XA 2FU5A 5F9HA 3GA3A 1FWQA 5F98A 3LRRA 4BPBA 2KWBA 1H6QA 1HXRA 2RQBA 1YZ1A 2RQAA 3DJMA 4A2VA 5F9FA 2QFBA 3OG8A 1TXJA 3NCUA 2LVLA 1H7YA 5E3HA 3EQTA 3EBMA 3LRNA 2YKGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FU5 A;  3P3K A;  1TXJ A;  1FWQ A;  2LOY A;  1H7Y A;  2KWB A;  1H6Q A;  1HXR A;  2HR9 A;  1YZ1 A;  3EBM A; 
#chains in the Genus database with same CATH topology
 4AY2 A;  4V30 A;  3P3K A;  4TZC A;  3E0M A;  2RMJ A;  2LOY A;  3ZD7 A;  3ZD6 A;  2K8D A;  2QFD A;  3CEZ A;  2W4R A;  3FAC A;  2HR9 A;  3HCJ A;  4CI2 B;  4A2X A;  2FU5 A;  2KV1 A;  5F9H A;  3GA3 A;  1FWQ A;  5F98 A;  3LRR A;  4BPB A;  5AMH A;  4CI1 B;  2KWB A;  1H6Q A;  4V2Y A;  4V2Z A;  3HCI A;  1HXR A;  2RQB A;  1YZ1 A;  2RQA A;  3HCH A;  2KZN A;  3CXK A;  3MAO A;  3WX2 A;  3DJM A;  1L1D A;  3HCG A;  4CI3 B;  3WX1 A;  4A2V A;  4V31 A;  5F9F A;  2QFB A;  3OG8 A;  1TXJ A;  3E0O A;  4TZU A;  3NCU A;  4TZ4 C;  2LVL A;  1H7Y A;  5E3H A;  3EQT A;  3EBM A;  3LRN A;  2YKG A; 
#chains in the Genus database with same CATH homology
 4AY2 A;  3P3K A;  2RMJ A;  2LOY A;  3ZD7 A;  3ZD6 A;  2QFD A;  2W4R A;  3FAC A;  2HR9 A;  4A2X A;  2FU5 A;  5F9H A;  3GA3 A;  1FWQ A;  5F98 A;  3LRR A;  4BPB A;  2KWB A;  1H6Q A;  1HXR A;  2RQB A;  1YZ1 A;  2RQA A;  3DJM A;  4A2V A;  5F9F A;  2QFB A;  3OG8 A;  1TXJ A;  3NCU A;  2LVL A;  1H7Y A;  5E3H A;  3EQT A;  3EBM A;  3LRN A;  2YKG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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