2L1PA

Nmr solution structure of the n-terminal domain of dna-binding protein satb1 from homo sapiens: northeast structural genomics target hr4435b(179-250)
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
83
structure length
83
Chain Sequence
MGHHHHHHSHMLPPEQWSHTTVRNALKDLLKDMNQSSLAKECPLSQSMISSIVNSTYYANVSAAKCQEFGRWYKHFKKTKDMM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Dna binding protein
molecule keywords DNA-binding protein SATB1
publication title NMR solution structure of the N-terminal domain of DNA-binding protein SATB1 from Homo sapiens: Northeast Structural Genomics Target HR4435B(179-250)
rcsb
source organism Homo sapiens
total genus 18
structure length 83
sequence length 83
ec nomenclature
pdb deposition date 2010-08-02
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.260.70 Mainly Alpha Orthogonal Bundle 434 Repressor (Amino-terminal Domain) 434 Repressor (Amino-terminal Domain) 2l1pA00
3NZLA 2L1PA 4Q2JA
chains in the Genus database with same CATH superfamily
1JWLA 2JVLA 1S7EA 1Y7YA 2D5VA 4FBIA 4PU4C 4ER7A 1LMB3 1WETA 1ZZ6A 2FFHA 4X4CA 1DW9A 3R1FA 3S8QA 4Z5HA 4EKIA 2O49A 5DSXA 1RPEL 2PIJA 2AXUA 2XXQA 2JCGA 4YG1A 4EQZA 2KEKA 2M4HA 3NROA 3OQNA 4X4BA 3ZHMA 2PXTA 2ODRD 4YARA 3G5GA 3SR4A 2AXVA 2LYRA 3TFLA 4OBMA 5DT2A 1Y9QA 2LYPA 4X4FA 2AW6A 1ZZ7A 2J7WA 2XCJA 4IWRA 3G0TA 3QF3A 2IVQA 2J7UA 2JQEA 3GZCA 3JXCL 4Q2JA 3VK0A 1ZZCA 1CJGA 1QB2A 4PU7A 5K98B 2LYKA 2PXFA 2HSGA 3LFPA 2PXLA 5DRYA 3TEPA 2H8RA 4X4GA 4YBAA 1ZAYA 3DNVB 2R63A 4GQMA 3KZ3A 4X4EA 3FMYA 3SCHA 2PXQA 3KL4A 3UWPA 4DE8A 1E3OC 2PXDA 2V3CC 1JH9A 2EBYA 3GZDA 1IC8A 3A9YA 5DTQA 2AXZA 4GHJA 2BJCA 4MCTA 2EWTA 3JXBC 1ZPQA 3BD1A 1LCCA 4X4HA 1EFAA 2O38A 4Y42A 3HZIB 4I6TA 3B7HA 2IVGA 2LNMA 3DM5A 3QFIA 1RZRD 4ER3A 2FJRA 3UFDA 1LCDA 4JQDA 3F52A 2MEZA 3F51A 3QYXA 1QQAA 1ZUGA 4Z5CA 4YG4A 4JCYA 1PRVA 2VEOA 1QP7A 1R63A 2CSFA 3A9ZA 1JFSA 1ZVVA 3BS3A 1BDHA 3ME5A 4YG7B 2OR1L 3MEJA 3GUUA 3QWGA 2PXBA 1OCTC 3KXAA 2GRMA 3U3WA 2LCVA 1NEQA 2GRLA 2L1PA 3SX0A 4J1WA 2XSDC 3ZPXA 3JXDL 1PNRA 3QOXA 4Z5DA 3QOWA 3O9XA 3SCGA 4Z58A 3CROL 2PUDA 2PXPA 3R09A 2AUWA 3FYMA 2PUFA 3EUSA 1ADRA 4J1XA 3KJXA 1ZS4A 1WH6A 1WIZA 3LISA 1NERA 3GZDC 2EF8A 3QQ6A 3NXHA 3NZLA 2AWIA 2KEIA 2XJ3A 2PPXA 5DTRA 3MLFA 4NDWA 3L1PA 5A7LA 4JCXA 1POUA 2B5AA 1HQ1A 4EKGA 2PUGA 2PXEA 2PUBA 2HCSA 2XIUA 3NDBB 2LYLA 1UXDA 1UTXA 3GN5B 1XWRA 1L1MA 1U2ZA 4MCXA 3D1NI 1MFQC 1NW3A 3G7DA 1SQ8A 4DE9A 1GT0C 1DULA 4OB4A 3FYAA 4WVLA 2PXUA 1PERL 1DWKA 1LLIA 1PRUA 3TRBA 3OQMA 1ZZBA 1UXCA 3OQOA 4IVZA 2HINA 1QP4A 2KEJA 4X4DA 5GAGi 2XXPA 2XI8A 1X2LA 1RIOA 2KZ8A 1ZZ8A 2GZUA 1B0NA 1AU7A 3OP9A 3CLCA 2PUAA 4PU8A 2KPJA 1O4XA 1WH8A 2LYJA 3RZZA 2A6CA 1QP0A 1BDIA 4Z59A 2OFYA 2PUEA 3PXPA 2R1JL 2PE5A 4ER0A 1VPWA 1LQCA 2LLWA 1CQTA 2CROA 3PE5A 4EK9A 1X57A 1QZXA 3M9LA 1YSEA 2PXVA 2IUOA 4F8DA 2WIUB 3GBFA 1QPZA 2BNOA 1RZRA 4O8BA 5DTMA 3CECA 2PXKA 3OMTA 4I8TA 3IVPA 1HF0A 2HCNA 4HRAA 2IU7A 2MQKA 3GN5A 2LLVA 2L8NA 3SCFA 1PRAA 2BNNA 2ICTA 1ZZ9A 4FN3A 2L49A 2HFZA 4ER6A 3OWQA 4X4IA 3ZKCA 2YBDA 2O4AA 2IV1A 2PUCA 5DRTA 5JUWA 3OKZA 3F6WA 3LQXA 2LYQA 3A9XA 2IVBA 1JFTA 2WUSR 4IA8A 3VWSA 2XXAA 2BNMA 2MXDA 1R69A 1QQBA 4EZIA 4ER5A 1RZSA 2LYSA 1OSLA 5GAHi 3TELA 4PU3C 3H5TA 3BDNA 4I6RA 3ZHIA 4I6UA 2ICPA
chains in the Genus database with same CATH topology
4ER7A 3GZDA 3M9LA 3A9XA 2L1PA 2LLVA 3SX0A 4DE9A 4EKGA 2VEOA 3A9YA 5DTQA 3GZDC 2XXQA 4WVLA 3VWSA 3ZPXA 4EQZA 5DRYA 3NXHA 3A9ZA 3NZLA 2HCSA 2M4HA 3QOWA 2MXDA 2HFZA 2J7WA 2LNMA 3NROA 3QFIA 4ER0A 4ER6A 3OWQA 5DTMA 4EZIA 5DTRA 4ER5A 3R09A 3ME5A 4ER3A 3G0TA 2LLWA 2J7UA 3GZCA 3GUUA 3MEJA 1U2ZA 2YBDA 4Q2JA 3TELA 3TEPA 3UWPA 2ODRD 4DE8A 3SR4A 5DRTA 4EKIA 2HCNA 2XXPA 3QOXA 4HRAA 5JUWA 3PE5A 4OBMA 5DT2A 3TFLA 4EK9A 5DSXA 3OKZA 1NW3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NZL A;  2L1P A;  4Q2J A; 
#chains in the Genus database with same CATH topology
 1JWL A;  2JVL A;  1S7E A;  1Y7Y A;  2D5V A;  4FBI A;  4PU4 C;  4ER7 A;  1LMB 3;  1WET A;  1ZZ6 A;  2FFH A;  4X4C A;  1DW9 A;  3R1F A;  3S8Q A;  4Z5H A;  4EKI A;  2O49 A;  5DSX A;  1RPE L;  2PIJ A;  2AXU A;  2XXQ A;  2JCG A;  4YG1 A;  4EQZ A;  2KEK A;  2M4H A;  3NRO A;  3OQN A;  4X4B A;  3ZHM A;  2PXT A;  2ODR D;  4YAR A;  3G5G A;  3SR4 A;  2AXV A;  2LYR A;  3TFL A;  4OBM A;  5DT2 A;  1Y9Q A;  2LYP A;  4X4F A;  2AW6 A;  1ZZ7 A;  2J7W A;  2XCJ A;  4IWR A;  3G0T A;  3QF3 A;  2IVQ A;  2J7U A;  2JQE A;  3GZC A;  3JXC L;  4Q2J A;  3VK0 A;  1ZZC A;  1CJG A;  1QB2 A;  4PU7 A;  5K98 B;  2LYK A;  2PXF A;  2HSG A;  3LFP A;  2PXL A;  5DRY A;  3TEP A;  2H8R A;  4X4G A;  4YBA A;  1ZAY A;  3DNV B;  2R63 A;  4GQM A;  3KZ3 A;  4X4E A;  3FMY A;  3SCH A;  2PXQ A;  3KL4 A;  3UWP A;  4DE8 A;  1E3O C;  2PXD A;  2V3C C;  1JH9 A;  2EBY A;  3GZD A;  1IC8 A;  3A9Y A;  5DTQ A;  2AXZ A;  4GHJ A;  2BJC A;  4MCT A;  2EWT A;  3JXB C;  1ZPQ A;  3BD1 A;  1LCC A;  4X4H A;  1EFA A;  2O38 A;  4Y42 A;  3HZI B;  4I6T A;  3B7H A;  2IVG A;  2LNM A;  3DM5 A;  3QFI A;  1RZR D;  4ER3 A;  2FJR A;  3UFD A;  1LCD A;  4JQD A;  3F52 A;  2MEZ A;  3F51 A;  3QYX A;  1QQA A;  1ZUG A;  4Z5C A;  4YG4 A;  4JCY A;  1PRV A;  2VEO A;  1QP7 A;  1R63 A;  2CSF A;  3A9Z A;  1JFS A;  1ZVV A;  3BS3 A;  1BDH A;  3ME5 A;  4YG7 B;  2OR1 L;  3MEJ A;  3GUU A;  3QWG A;  2PXB A;  1OCT C;  3KXA A;  2GRM A;  3U3W A;  2LCV A;  1NEQ A;  2GRL A;  2L1P A;  3SX0 A;  4J1W A;  2XSD C;  3ZPX A;  3JXD L;  1PNR A;  3QOX A;  4Z5D A;  3QOW A;  3O9X A;  3SCG A;  4Z58 A;  3CRO L;  2PUD A;  2PXP A;  3R09 A;  2AUW A;  3FYM A;  2PUF A;  3EUS A;  1ADR A;  4J1X A;  3KJX A;  1ZS4 A;  1WH6 A;  1WIZ A;  3LIS A;  1NER A;  3GZD C;  2EF8 A;  3QQ6 A;  3NXH A;  3NZL A;  2AWI A;  2KEI A;  2XJ3 A;  2PPX A;  5DTR A;  3MLF A;  4NDW A;  3L1P A;  5A7L A;  4JCX A;  1POU A;  2B5A A;  1HQ1 A;  4EKG A;  2PUG A;  2PXE A;  2PUB A;  2HCS A;  2XIU A;  3NDB B;  2LYL A;  1UXD A;  1UTX A;  3GN5 B;  1XWR A;  1L1M A;  1U2Z A;  4MCX A;  3D1N I;  1MFQ C;  1NW3 A;  3G7D A;  1SQ8 A;  4DE9 A;  1GT0 C;  1DUL A;  4OB4 A;  3FYA A;  4WVL A;  2PXU A;  1PER L;  1DWK A;  1LLI A;  1PRU A;  3TRB A;  3OQM A;  1ZZB A;  1UXC A;  3OQO A;  4IVZ A;  2HIN A;  1QP4 A;  2KEJ A;  4X4D A;  5GAG i;  2XXP A;  2XI8 A;  1X2L A;  1RIO A;  2KZ8 A;  1ZZ8 A;  2GZU A;  1B0N A;  1AU7 A;  3OP9 A;  3CLC A;  2PUA A;  4PU8 A;  2KPJ A;  1O4X A;  1WH8 A;  2LYJ A;  3RZZ A;  2A6C A;  1QP0 A;  1BDI A;  4Z59 A;  2OFY A;  2PUE A;  3PXP A;  2R1J L;  2PE5 A;  4ER0 A;  1VPW A;  1LQC A;  2LLW A;  1CQT A;  2CRO A;  3PE5 A;  4EK9 A;  1X57 A;  1QZX A;  3M9L A;  1YSE A;  2PXV A;  2IUO A;  4F8D A;  2WIU B;  3GBF A;  1QPZ A;  2BNO A;  1RZR A;  4O8B A;  5DTM A;  3CEC A;  2PXK A;  3OMT A;  4I8T A;  3IVP A;  1HF0 A;  2HCN A;  4HRA A;  2IU7 A;  2MQK A;  3GN5 A;  2LLV A;  2L8N A;  3SCF A;  1PRA A;  2BNN A;  2ICT A;  1ZZ9 A;  4FN3 A;  2L49 A;  2HFZ A;  4ER6 A;  3OWQ A;  4X4I A;  3ZKC A;  2YBD A;  2O4A A;  2IV1 A;  2PUC A;  5DRT A;  5JUW A;  3OKZ A;  3F6W A;  3LQX A;  2LYQ A;  3A9X A;  2IVB A;  1JFT A;  2WUS R;  4IA8 A;  3VWS A;  2XXA A;  2BNM A;  2MXD A;  1R69 A;  1QQB A;  4EZI A;  4ER5 A;  1RZS A;  2LYS A;  1OSL A;  5GAH i;  3TEL A;  4PU3 C;  3H5T A;  3BDN A;  4I6R A;  3ZHI A;  4I6U A;  2ICP A; 
#chains in the Genus database with same CATH homology
 4ER7 A;  3GZD A;  3M9L A;  3A9X A;  2L1P A;  2LLV A;  3SX0 A;  4DE9 A;  4EKG A;  2VEO A;  3A9Y A;  5DTQ A;  3GZD C;  2XXQ A;  4WVL A;  3VWS A;  3ZPX A;  4EQZ A;  5DRY A;  3NXH A;  3A9Z A;  3NZL A;  2HCS A;  2M4H A;  3QOW A;  2MXD A;  2HFZ A;  2J7W A;  2LNM A;  3NRO A;  3QFI A;  4ER0 A;  4ER6 A;  3OWQ A;  5DTM A;  4EZI A;  5DTR A;  4ER5 A;  3R09 A;  3ME5 A;  4ER3 A;  3G0T A;  2LLW A;  2J7U A;  3GZC A;  3GUU A;  3MEJ A;  1U2Z A;  2YBD A;  4Q2J A;  3TEL A;  3TEP A;  3UWP A;  2ODR D;  4DE8 A;  3SR4 A;  5DRT A;  4EKI A;  2HCN A;  2XXP A;  3QOX A;  4HRA A;  5JUW A;  3PE5 A;  4OBM A;  5DT2 A;  3TFL A;  4EK9 A;  5DSX A;  3OKZ A;  1NW3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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