2L6EA

Nmr structure of the monomeric mutant c-terminal domain of hiv-1 capsid in complex with stapled peptide inhibitor
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
94
structure length
94
Chain Sequence
SGLVPRGSHMTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNAATETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Viral protein/inhibitor
molecule keywords Capsid protein p24
publication title Solution structure of a hydrocarbon stapled peptide inhibitor in complex with monomeric C-terminal domain of HIV-1 capsid.
pubmed doi rcsb
source organism Human immunodeficiency virus 1
total genus 28
structure length 94
sequence length 94
ec nomenclature ec 2.7.7.49: RNA-directed DNA polymerase.
pdb deposition date 2010-11-18
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.30 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 2l6eA00
4COPA 5DCKA 3DS0A 5JPAA 3DS1A 3MGEA 1AUMA 2LF4A 1BAJA 4U0DA 3G0VA 4XFXA 3H4EA 2JO0A 2EIAA 3DTJA 4U0EA 4XRQA 5HGLA 2JYLA 2BUOA 2ONTA 4PH1A 3G21A 3G1IA 4COCA 2KODA 5I4TG 3G29A 2L6EA 3G1GA 3DS3A 3P05A 4QNBA 4U0FA 1A8OA 4IPYA 2M8LA 2XXMA 4U0CA 3VRLC 1QRJA 1EOQA 3DS5A 2XT1A 5HGNA 4XFYA 5HGMA 1A43A 2XV6A 2JYGA 3DPHA 3DS4A 3G28A 3LRYA 2M8PA 1D1DA 1E6JP 1EIAA 4M0IA 4XFZA 2M8NA 4XROA 4PH0A 3H47A 3DS2A 4U0AA 4U0BA 3NTEA 4WYMA 3G26A 5HGOA
chains in the Genus database with same CATH superfamily
4GR6A 1Q7YQ 1QVFO 2LTEA 4U0EA 1JJ2O 2BUOA 4BPHA 4H2YC 2KODA 2K5XA 5I4TG 1ZNVA 3CCLP 1VQ6P 2AFDA 4XROA 2GZIA 1D1DA 5CZDB 2N5IA 1NQ4A 1YITP 2KG8A 3DS3A 2OTLP 3B5IA 2GDYA 1N8RQ 2KORA 1E6JP 2PEMA 2FQ1A 1VQMP 4BPFA 3CCMP 2Z46A 3CC2P 3HYBA 1QVGO 2E1MA 5BS1A 3G21A 1MZ8A 2EHSA 2KG6A 3EJDA 4GR2A 4IZ6A 2JU1A 1AF8A 3CD6P 1K30A 1DV5A 4PH0A 2PEQA 4R0MA 3CXCO 2N6YA 3MGEA 4U0DA 1UJZA 5KP7B 2PEJA 1M90Q 3CMEP 3CE7A 4PH1A 1VQ5P 3GZLA 2AVAA 5KP8B 1ACPA 1L0IA 1VKUA 2FHSC 2QNWA 2VLQA 2VLPA 2LMLA 2M8PA 4BPGA 3NTEA 2KOPA 2N5HA 1DNYA 2DGYA 1EMVA 2JB0A 1Q86Q 3H4EA 5HGLA 1HQBA 1EOQA 2PEKA 2FVFA 1EIAA 5BS2A 1RNIA 1VQPP 3WBHA 3EJEA 2L0QA 1YJNP 2ONTA 2N6ZA 2N98A 1YHQP 2KW2A 2VSQA 2BHVA 2MD9A 2GDWA 2JU2A 1KLPA 3DS5A 2XV6A 5F2OA 4M0IA 4WYMA 3CCJP 2FQ2A 3I56P 2KOOA 4NEOA 2FVEA 2FAEA 2M5RA 4PXHB 1Q81Q 1KC8Q 3CCUP 5F2KA 1K8AQ 4IPYA 2GZEA 2WPTA 1T8KA 1Q82Q 2MVVA 2K94A 4XFZA 2GZGA 2NO8A 5HGOA 3CMAP 5DCKA 3DS0A 2EHTA 1KD1Q 2MR7A 1KQSO 3U43A 2OTJP 4CA3A 2K0YA 2QA4P 1A43A 3G28A 3CCSP 1Z6MA 3DS1A 1RO0A 2LF4A 1X3OA 3M1MA 1NJIQ 1BXIA 3HZQA 2LIUA 3RG2A 2KG9A 2FACA 1VQ9P 2VLOA 1GXHA 4U0CA 4MRTC 3DPHA 3LRYA 2MVUA 3LMOA 1E0HA 4COPA 5JPAA 1OR5A 2GDXA 3G1IA 3I55P 1VQLP 5HVCA 4H2WC 2MF4A 2N50A 3GZMA 3G1GA 3G71P 4U0FA 2LL8A 1QRJA 1VQ7P 3DS4A 2KR5A 2JGPA 2M8NA 3H47A 1VHNA 2ROQA 2GZJA 2KGCA 5EJDA 2KGDA 2CWOA 5F2NA 5EW5E 1CEIA 2EIAA 3CCEP 2KWLA 1M74A 4UHPB 5KP6B 2AFEA 3G29A 1GXGA 2AF8A 3EJBA 2PEOA 2XZ0D 2QEXP 2FVAA 3GKLC 3GJNA 3NY7B 2LPKA 2LIWA 2KGEA 1RO2A 3OW2O 3G4SP 3CC4P 2JYLA 2Z45A 2EFJA 1AYIA 3CCRP 2MY5A 2JQ4A 2KGAA 2EG5A 1GPJA 4XFYA 1YJ9P 2L4BA 1VQOP 3G6EP 3P05A 2LOLA 4DG9A 1BAJA 1K73Q 2X2BA 1VQ8P 3H0DA 1S72P 3DTJA 1M1KQ 1K9MQ 2CNRA 2P9XA 2KOQA 2XZ1C 4QNBA 5HGNA 5HGMA 1HY8A 2K0XA 7CEIA 3DS2A 3G26A 3CC7P 2L9FA 3CCVP 1VQ4P 1W2BO 1AUMA 1IMPA 2DNWA 3B4QA 4QKOA 3CPWO 1M6NA 1F80D 4PWVB 2L6EA 2PENA 5HV8A 2K92A 1YIJP 2L22A 2PNGA 1A8OA 1UNKA 4HKGA 2XXMA 3VRLC 2XT1A 1YJWP 2JYGA 4F37A 2FQ0A 1M6EX 4U0AA 4U0BA 2CG5B 2PY8A 3Q20A 2GYKA 3G0VA 4XFXA 2VLNA 3CCQP 1YI2P 4COCA 1L0HA 3E2DA 2K2QA 1ZMBA 1IUQA 2K93A 2M8LA 1IMQA 2KOSA 2OARA 2JBGA 2GZFA 1FR2A 2CGQA 2ERHA 2JO0A 2FADA 4XRQA 1VQNP 4H2XC 2JAZA 2K0DX 2CQ8A 3RG6C 2LKIA 2Z44A 2MR8A 2PEIA 1VQKP
chains in the Genus database with same CATH topology
3DS1A 2DGYA 1RO0A 2LF4A 1BAJA 3M1MA 1K73Q 4GR6A 1Q86Q 1NJIQ 1VQ8P 3HZQA 3H4EA 3H0DA 1S72P 3DTJA 5HGLA 1Q7YQ 4U0EA 1JJ2O 1QVFO 2BUOA 1M1KQ 1K9MQ 2KODA 5I4TG 3CCLP 1VQ6P 2P9XA 1VQ9P 4QNBA 4U0CA 1EOQA 5HGNA 5HGMA 2PEKA 3DPHA 3LRYA 1EIAA 4XROA 1RNIA 5BS2A 1VQPP 3DS2A 3WBHA 1D1DA 3G26A 4COPA 3CC7P 5JPAA 3CCVP 1VQ4P 1W2BO 1AUMA 1YJNP 3CPWO 2ONTA 1M6NA 1YITP 3G1IA 3I55P 1VQLP 1YHQP 2L6EA 2PENA 2BHVA 3G1GA 1YIJP 3DS3A 2OTLP 3G71P 4U0FA 1A8OA 2XXMA 3VRLC 1QRJA 3B5IA 3DS5A 2XT1A 1YJWP 1N8RQ 1VQ7P 2XV6A 2JYGA 3DS4A 5F2OA 2PEMA 1E6JP 3NTEA 4M0IA 2M8NA 1M6EX 3H47A 4U0AA 4U0BA 4WYMA 3CCMP 1VQMP 3CCJP 3I56P 2PY8A 3Q20A 2Z46A 3G0VA 4XFXA 3CC2P 2CWOA 3HYBA 5F2NA 2EIAA 1QVGO 2E1MA 3CCEP 3CCQP 5BS1A 1M74A 1YI2P 3G21A 4COCA 1Q81Q 1KC8Q 3CCUP 5F2KA 1K8AQ 3G29A 3E2DA 1ZMBA 1IUQA 2PEOA 2QEXP 4IPYA 2M8LA 4GR2A 1Q82Q 3CD6P 1K30A 4XFZA 4PH0A 2PEQA 2OARA 5HGOA 3CMAP 1RO2A 5DCKA 3DS0A 3OW2O 3CXCO 3G4SP 3MGEA 1KD1Q 4U0DA 2PEJA 1M90Q 2JO0A 4XRQA 3CC4P 3CMEP 2JYLA 2Z45A 2EFJA 1VQNP 4PH1A 3CCRP 1VQ5P 3RG6C 1KQSO 2OTJP 2EG5A 2QA4P 4XFYA 1A43A 3G28A 2M8PA 1YJ9P 2Z44A 1VQOP 2PEIA 3G6EP 3P05A 3CCSP 1VQKP
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4COP A;  5DCK A;  3DS0 A;  5JPA A;  3DS1 A;  3MGE A;  1AUM A;  2LF4 A;  1BAJ A;  4U0D A;  3G0V A;  4XFX A;  3H4E A;  2JO0 A;  2EIA A;  3DTJ A;  4U0E A;  4XRQ A;  5HGL A;  2JYL A;  2BUO A;  2ONT A;  4PH1 A;  3G21 A;  3G1I A;  4COC A;  2KOD A;  5I4T G;  3G29 A;  2L6E A;  3G1G A;  3DS3 A;  3P05 A;  4QNB A;  4U0F A;  1A8O A;  4IPY A;  2M8L A;  2XXM A;  4U0C A;  3VRL C;  1QRJ A;  1EOQ A;  3DS5 A;  2XT1 A;  5HGN A;  4XFY A;  5HGM A;  1A43 A;  2XV6 A;  2JYG A;  3DPH A;  3DS4 A;  3G28 A;  3LRY A;  2M8P A;  1D1D A;  1E6J P;  1EIA A;  4M0I A;  4XFZ A;  2M8N A;  4XRO A;  4PH0 A;  3H47 A;  3DS2 A;  4U0A A;  4U0B A;  3NTE A;  4WYM A;  3G26 A;  5HGO A; 
#chains in the Genus database with same CATH topology
 4GR6 A;  1Q7Y Q;  1QVF O;  2LTE A;  4U0E A;  1JJ2 O;  2BUO A;  4BPH A;  4H2Y C;  2KOD A;  2K5X A;  5I4T G;  1ZNV A;  3CCL P;  1VQ6 P;  2AFD A;  4XRO A;  2GZI A;  1D1D A;  5CZD B;  2N5I A;  1NQ4 A;  1YIT P;  2KG8 A;  3DS3 A;  2OTL P;  3B5I A;  2GDY A;  1N8R Q;  2KOR A;  1E6J P;  2PEM A;  2FQ1 A;  1VQM P;  4BPF A;  3CCM P;  2Z46 A;  3CC2 P;  3HYB A;  1QVG O;  2E1M A;  5BS1 A;  3G21 A;  1MZ8 A;  2EHS A;  2KG6 A;  3EJD A;  4GR2 A;  4IZ6 A;  2JU1 A;  1AF8 A;  3CD6 P;  1K30 A;  1DV5 A;  4PH0 A;  2PEQ A;  4R0M A;  3CXC O;  2N6Y A;  3MGE A;  4U0D A;  1UJZ A;  5KP7 B;  2PEJ A;  1M90 Q;  3CME P;  3CE7 A;  4PH1 A;  1VQ5 P;  3GZL A;  2AVA A;  5KP8 B;  1ACP A;  1L0I A;  1VKU A;  2FHS C;  2QNW A;  2VLQ A;  2VLP A;  2LML A;  2M8P A;  4BPG A;  3NTE A;  2KOP A;  2N5H A;  1DNY A;  2DGY A;  1EMV A;  2JB0 A;  1Q86 Q;  3H4E A;  5HGL A;  1HQB A;  1EOQ A;  2PEK A;  2FVF A;  1EIA A;  5BS2 A;  1RNI A;  1VQP P;  3WBH A;  3EJE A;  2L0Q A;  1YJN P;  2ONT A;  2N6Z A;  2N98 A;  1YHQ P;  2KW2 A;  2VSQ A;  2BHV A;  2MD9 A;  2GDW A;  2JU2 A;  1KLP A;  3DS5 A;  2XV6 A;  5F2O A;  4M0I A;  4WYM A;  3CCJ P;  2FQ2 A;  3I56 P;  2KOO A;  4NEO A;  2FVE A;  2FAE A;  2M5R A;  4PXH B;  1Q81 Q;  1KC8 Q;  3CCU P;  5F2K A;  1K8A Q;  4IPY A;  2GZE A;  2WPT A;  1T8K A;  1Q82 Q;  2MVV A;  2K94 A;  4XFZ A;  2GZG A;  2NO8 A;  5HGO A;  3CMA P;  5DCK A;  3DS0 A;  2EHT A;  1KD1 Q;  2MR7 A;  1KQS O;  3U43 A;  2OTJ P;  4CA3 A;  2K0Y A;  2QA4 P;  1A43 A;  3G28 A;  3CCS P;  1Z6M A;  3DS1 A;  1RO0 A;  2LF4 A;  1X3O A;  3M1M A;  1NJI Q;  1BXI A;  3HZQ A;  2LIU A;  3RG2 A;  2KG9 A;  2FAC A;  1VQ9 P;  2VLO A;  1GXH A;  4U0C A;  4MRT C;  3DPH A;  3LRY A;  2MVU A;  3LMO A;  1E0H A;  4COP A;  5JPA A;  1OR5 A;  2GDX A;  3G1I A;  3I55 P;  1VQL P;  5HVC A;  4H2W C;  2MF4 A;  2N50 A;  3GZM A;  3G1G A;  3G71 P;  4U0F A;  2LL8 A;  1QRJ A;  1VQ7 P;  3DS4 A;  2KR5 A;  2JGP A;  2M8N A;  3H47 A;  1VHN A;  2ROQ A;  2GZJ A;  2KGC A;  5EJD A;  2KGD A;  2CWO A;  5F2N A;  5EW5 E;  1CEI A;  2EIA A;  3CCE P;  2KWL A;  1M74 A;  4UHP B;  5KP6 B;  2AFE A;  3G29 A;  1GXG A;  2AF8 A;  3EJB A;  2PEO A;  2XZ0 D;  2QEX P;  2FVA A;  3GKL C;  3GJN A;  3NY7 B;  2LPK A;  2LIW A;  2KGE A;  1RO2 A;  3OW2 O;  3G4S P;  3CC4 P;  2JYL A;  2Z45 A;  2EFJ A;  1AYI A;  3CCR P;  2MY5 A;  2JQ4 A;  2KGA A;  2EG5 A;  1GPJ A;  4XFY A;  1YJ9 P;  2L4B A;  1VQO P;  3G6E P;  3P05 A;  2LOL A;  4DG9 A;  1BAJ A;  1K73 Q;  2X2B A;  1VQ8 P;  3H0D A;  1S72 P;  3DTJ A;  1M1K Q;  1K9M Q;  2CNR A;  2P9X A;  2KOQ A;  2XZ1 C;  4QNB A;  5HGN A;  5HGM A;  1HY8 A;  2K0X A;  7CEI A;  3DS2 A;  3G26 A;  3CC7 P;  2L9F A;  3CCV P;  1VQ4 P;  1W2B O;  1AUM A;  1IMP A;  2DNW A;  3B4Q A;  4QKO A;  3CPW O;  1M6N A;  1F80 D;  4PWV B;  2L6E A;  2PEN A;  5HV8 A;  2K92 A;  1YIJ P;  2L22 A;  2PNG A;  1A8O A;  1UNK A;  4HKG A;  2XXM A;  3VRL C;  2XT1 A;  1YJW P;  2JYG A;  4F37 A;  2FQ0 A;  1M6E X;  4U0A A;  4U0B A;  2CG5 B;  2PY8 A;  3Q20 A;  2GYK A;  3G0V A;  4XFX A;  2VLN A;  3CCQ P;  1YI2 P;  4COC A;  1L0H A;  3E2D A;  2K2Q A;  1ZMB A;  1IUQ A;  2K93 A;  2M8L A;  1IMQ A;  2KOS A;  2OAR A;  2JBG A;  2GZF A;  1FR2 A;  2CGQ A;  2ERH A;  2JO0 A;  2FAD A;  4XRQ A;  1VQN P;  4H2X C;  2JAZ A;  2K0D X;  2CQ8 A;  3RG6 C;  2LKI A;  2Z44 A;  2MR8 A;  2PEI A;  1VQK P; 
#chains in the Genus database with same CATH homology
 3DS1 A;  2DGY A;  1RO0 A;  2LF4 A;  1BAJ A;  3M1M A;  1K73 Q;  4GR6 A;  1Q86 Q;  1NJI Q;  1VQ8 P;  3HZQ A;  3H4E A;  3H0D A;  1S72 P;  3DTJ A;  5HGL A;  1Q7Y Q;  4U0E A;  1JJ2 O;  1QVF O;  2BUO A;  1M1K Q;  1K9M Q;  2KOD A;  5I4T G;  3CCL P;  1VQ6 P;  2P9X A;  1VQ9 P;  4QNB A;  4U0C A;  1EOQ A;  5HGN A;  5HGM A;  2PEK A;  3DPH A;  3LRY A;  1EIA A;  4XRO A;  1RNI A;  5BS2 A;  1VQP P;  3DS2 A;  3WBH A;  1D1D A;  3G26 A;  4COP A;  3CC7 P;  5JPA A;  3CCV P;  1VQ4 P;  1W2B O;  1AUM A;  1YJN P;  3CPW O;  2ONT A;  1M6N A;  1YIT P;  3G1I A;  3I55 P;  1VQL P;  1YHQ P;  2L6E A;  2PEN A;  2BHV A;  3G1G A;  1YIJ P;  3DS3 A;  2OTL P;  3G71 P;  4U0F A;  1A8O A;  2XXM A;  3VRL C;  1QRJ A;  3B5I A;  3DS5 A;  2XT1 A;  1YJW P;  1N8R Q;  1VQ7 P;  2XV6 A;  2JYG A;  3DS4 A;  5F2O A;  2PEM A;  1E6J P;  3NTE A;  4M0I A;  2M8N A;  1M6E X;  3H47 A;  4U0A A;  4U0B A;  4WYM A;  3CCM P;  1VQM P;  3CCJ P;  3I56 P;  2PY8 A;  3Q20 A;  2Z46 A;  3G0V A;  4XFX A;  3CC2 P;  2CWO A;  3HYB A;  5F2N A;  2EIA A;  1QVG O;  2E1M A;  3CCE P;  3CCQ P;  5BS1 A;  1M74 A;  1YI2 P;  3G21 A;  4COC A;  1Q81 Q;  1KC8 Q;  3CCU P;  5F2K A;  1K8A Q;  3G29 A;  3E2D A;  1ZMB A;  1IUQ A;  2PEO A;  2QEX P;  4IPY A;  2M8L A;  4GR2 A;  1Q82 Q;  3CD6 P;  1K30 A;  4XFZ A;  4PH0 A;  2PEQ A;  2OAR A;  5HGO A;  3CMA P;  1RO2 A;  5DCK A;  3DS0 A;  3OW2 O;  3CXC O;  3G4S P;  3MGE A;  1KD1 Q;  4U0D A;  2PEJ A;  1M90 Q;  2JO0 A;  4XRQ A;  3CC4 P;  3CME P;  2JYL A;  2Z45 A;  2EFJ A;  1VQN P;  4PH1 A;  3CCR P;  1VQ5 P;  3RG6 C;  1KQS O;  2OTJ P;  2EG5 A;  2QA4 P;  4XFY A;  1A43 A;  3G28 A;  2M8P A;  1YJ9 P;  2Z44 A;  1VQO P;  2PEI A;  3G6E P;  3P05 A;  3CCS P;  1VQK P; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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