2L8RA

Solution structure of human protein c6orf130 in complex with adp-ribose
Total Genus 43
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
150
structure length
150
Chain Sequence
SSLNEDPEGSRITYVKGDLFACPKTDSLAHCISEDCRMGAGIAVLFKKKFGGVQELLNQQKKSGEVAVLKRDGRYIYYLITKKRASHKPTYENLQKSLEAMKSHCLKNGVTDLSMPRIGCGLDRLQWENVSAMIEEVFEATDIKITVYTL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Uncharacterized protein C6orf130
publication title Orphan Macrodomain Protein (Human C6orf130) Is an O-Acyl-ADP-ribose Deacylase: SOLUTION STRUCTURE AND CATALYTIC PROPERTIES.
pubmed doi rcsb
source organism Homo sapiens
total genus 43
structure length 150
sequence length 150
ec nomenclature
pdb deposition date 2011-01-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01661 Macro Macro domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.220.10 Alpha Beta 3-Layer(aba) Sandwich Leucine Aminopeptidase, subunit E; domain 1 Leucine Aminopeptidase, subunit E, domain 1 2l8rA01
2BFRA 5FSZA 4ZX9A 4ZY1A 3SIIA 4UMLA 4K0CA 3IIDA 4JVVA 3IJ3A 2AFCA 5D8NA 2J9AA 3GQOA 1LAMA 4J5SA 3SIHA 1ZR3A 3EWQA 3V45A 3KQZA 3T8WA 4TU0A 2FG1A 3EKEA 3H8FA 1LANA 5FSYA 2FAVA 1TY8A 4JLLA 4ZYQA 1BPMA 4ZX8A 4K3NA 3GPQA 4ABKA 2ACFA 3SIJA 4JGKA 1LAPA 4ESSA 2XD7A 5CMSA 5DUSA 1HJZA 3EWOA 4J5QA 4JCAA 3H8GA 4GUAA 4ETJA 2BFQA 5FSVA 1TXZA 3KQXA 2LGRA 1LCPA 5CB5A 3GQEA 2EWBA 4ETKA 4R6TA 4KSIA 4ZI6A 5E3BA 5HOLA 3KR4A 4GVVA 3IIFA 4J4ZA 3Q71A 1SPVA 4D86A 2DX6A 4ABLA 3VFQA 3KZWA 2X47A 4X2TA 1ZR5A 3EW5A 1BPNA 2EEEA 3EWPA 3GPGA 4IQYA 4ZY2A 4KYBA 3ETIA 3EJFA 1VHUA 3EJGA 3Q6ZA 4ZY0A 5AILA 2VRIA 3EWRA 3JZTA 4GVWA 5FSUA 3JRUA 5CBMA 1GYTA 3V2BA 3KR5A 4R7MA 2FXKA 4J5RA 1BLLE 1NJRA 3GPOA 3H8EA 5FSXA 5HIHA 3PEIA 4R76A 1YD9A 3SIGA 2L8RA 5CB3A
chains in the Genus database with same CATH superfamily
2BFRA 5FSZA 4ZX9A 4ZY1A 3SIIA 4UMLA 4K0CA 3IIDA 4JVVA 3IJ3A 2AFCA 5D8NA 2J9AA 3GQOA 1LAMA 4J5SA 3SIHA 1ZR3A 3EWQA 3V45A 3KQZA 3T8WA 2RNKA 4TU0A 2FG1A 3EKEA 3H8FA 1LANA 5FSYA 2FAVA 1TY8A 4JLLA 4ZYQA 1BPMA 4ZX8A 4K3NA 3GPQA 4ABKA 2ACFA 3SIJA 4JGKA 1LAPA 2WCTA 4ESSA 2XD7A 5CMSA 5DUSA 1HJZA 3EWOA 2W2GA 4J5QA 4JCAA 3H8GA 4GUAA 4ETJA 2BFQA 5FSVA 1TXZA 3KQXA 2LGRA 1LCPA 5CB5A 3GQEA 2EWBA 4ETKA 4R6TA 4KSIA 4ZI6A 5E3BA 5HOLA 2JZDA 3KR4A 4GVVA 3IIFA 4J4ZA 3Q71A 1SPVA 4D86A 2KQVA 2DX6A 4ABLA 3VFQA 3KZWA 2X47A 4X2TA 1ZR5A 3EW5A 1BPNA 2EEEA 3EWPA 3GPGA 4IQYA 4ZY2A 4KYBA 3ETIA 3EJFA 1VHUA 3EJGA 3Q6ZA 4ZY0A 2JZEA 5AILA 2VRIA 3EWRA 3JZTA 4GVWA 5FSUA 3JRUA 5CBMA 1GYTA 2JZFA 3V2BA 3KR5A 4R7MA 2FXKA 4J5RA 1BLLE 1NJRA 3GPOA 3H8EA 5FSXA 5HIHA 3PEIA 4R76A 1YD9A 3SIGA 2L8RA 5CB3A
chains in the Genus database with same CATH topology
2BFRA 5FSZA 4ZX9A 4ZY1A 3SIIA 4UMLA 4K0CA 3IIDA 4JVVA 3IJ3A 2AFCA 5D8NA 2J9AA 3GQOA 1LAMA 4J5SA 3SIHA 1ZR3A 3EWQA 3V45A 3KQZA 3T8WA 4TU0A 2FG1A 3EKEA 3H8FA 1LANA 5FSYA 2FAVA 1TY8A 4JLLA 4ZYQA 1BPMA 4ZX8A 4K3NA 3GPQA 4ABKA 2ACFA 3SIJA 4JGKA 1LAPA 4ESSA 2XD7A 5CMSA 5DUSA 1HJZA 3EWOA 4J5QA 4JCAA 3H8GA 4GUAA 4ETJA 2BFQA 5FSVA 1TXZA 3KQXA 2LGRA 1LCPA 5CB5A 3GQEA 2EWBA 4ETKA 4R6TA 4KSIA 4ZI6A 5E3BA 5HOLA 3KR4A 4GVVA 3IIFA 4J4ZA 3Q71A 1SPVA 4D86A 2DX6A 4ABLA 3VFQA 3KZWA 2X47A 4X2TA 1ZR5A 3EW5A 1BPNA 2EEEA 3EWPA 3GPGA 4IQYA 4ZY2A 4KYBA 3ETIA 3EJFA 1VHUA 3EJGA 3Q6ZA 4ZY0A 5AILA 2VRIA 3EWRA 3JZTA 4GVWA 5FSUA 3JRUA 5CBMA 1GYTA 3V2BA 3KR5A 4R7MA 2FXKA 4J5RA 1BLLE 1NJRA 3GPOA 3H8EA 5FSXA 5HIHA 3PEIA 4R76A 1YD9A 3SIGA 2L8RA 5CB3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BFR A;  5FSZ A;  4ZX9 A;  4ZY1 A;  3SII A;  4UML A;  4K0C A;  3IID A;  4JVV A;  3IJ3 A;  2AFC A;  5D8N A;  2J9A A;  3GQO A;  1LAM A;  4J5S A;  3SIH A;  1ZR3 A;  3EWQ A;  3V45 A;  3KQZ A;  3T8W A;  4TU0 A;  2FG1 A;  3EKE A;  3H8F A;  1LAN A;  5FSY A;  2FAV A;  1TY8 A;  4JLL A;  4ZYQ A;  1BPM A;  4ZX8 A;  4K3N A;  3GPQ A;  4ABK A;  2ACF A;  3SIJ A;  4JGK A;  1LAP A;  4ESS A;  2XD7 A;  5CMS A;  5DUS A;  1HJZ A;  3EWO A;  4J5Q A;  4JCA A;  3H8G A;  4GUA A;  4ETJ A;  2BFQ A;  5FSV A;  1TXZ A;  3KQX A;  2LGR A;  1LCP A;  5CB5 A;  3GQE A;  2EWB A;  4ETK A;  4R6T A;  4KSI A;  4ZI6 A;  5E3B A;  5HOL A;  3KR4 A;  4GVV A;  3IIF A;  4J4Z A;  3Q71 A;  1SPV A;  4D86 A;  2DX6 A;  4ABL A;  3VFQ A;  3KZW A;  2X47 A;  4X2T A;  1ZR5 A;  3EW5 A;  1BPN A;  2EEE A;  3EWP A;  3GPG A;  4IQY A;  4ZY2 A;  4KYB A;  3ETI A;  3EJF A;  1VHU A;  3EJG A;  3Q6Z A;  4ZY0 A;  5AIL A;  2VRI A;  3EWR A;  3JZT A;  4GVW A;  5FSU A;  3JRU A;  5CBM A;  1GYT A;  3V2B A;  3KR5 A;  4R7M A;  2FXK A;  4J5R A;  1BLL E;  1NJR A;  3GPO A;  3H8E A;  5FSX A;  5HIH A;  3PEI A;  4R76 A;  1YD9 A;  3SIG A;  2L8R A;  5CB3 A; 
#chains in the Genus database with same CATH topology
 2BFR A;  5FSZ A;  4ZX9 A;  4ZY1 A;  3SII A;  4UML A;  4K0C A;  3IID A;  4JVV A;  3IJ3 A;  2AFC A;  5D8N A;  2J9A A;  3GQO A;  1LAM A;  4J5S A;  3SIH A;  1ZR3 A;  3EWQ A;  3V45 A;  3KQZ A;  3T8W A;  2RNK A;  4TU0 A;  2FG1 A;  3EKE A;  3H8F A;  1LAN A;  5FSY A;  2FAV A;  1TY8 A;  4JLL A;  4ZYQ A;  1BPM A;  4ZX8 A;  4K3N A;  3GPQ A;  4ABK A;  2ACF A;  3SIJ A;  4JGK A;  1LAP A;  2WCT A;  4ESS A;  2XD7 A;  5CMS A;  5DUS A;  1HJZ A;  3EWO A;  2W2G A;  4J5Q A;  4JCA A;  3H8G A;  4GUA A;  4ETJ A;  2BFQ A;  5FSV A;  1TXZ A;  3KQX A;  2LGR A;  1LCP A;  5CB5 A;  3GQE A;  2EWB A;  4ETK A;  4R6T A;  4KSI A;  4ZI6 A;  5E3B A;  5HOL A;  2JZD A;  3KR4 A;  4GVV A;  3IIF A;  4J4Z A;  3Q71 A;  1SPV A;  4D86 A;  2KQV A;  2DX6 A;  4ABL A;  3VFQ A;  3KZW A;  2X47 A;  4X2T A;  1ZR5 A;  3EW5 A;  1BPN A;  2EEE A;  3EWP A;  3GPG A;  4IQY A;  4ZY2 A;  4KYB A;  3ETI A;  3EJF A;  1VHU A;  3EJG A;  3Q6Z A;  4ZY0 A;  2JZE A;  5AIL A;  2VRI A;  3EWR A;  3JZT A;  4GVW A;  5FSU A;  3JRU A;  5CBM A;  1GYT A;  2JZF A;  3V2B A;  3KR5 A;  4R7M A;  2FXK A;  4J5R A;  1BLL E;  1NJR A;  3GPO A;  3H8E A;  5FSX A;  5HIH A;  3PEI A;  4R76 A;  1YD9 A;  3SIG A;  2L8R A;  5CB3 A; 
#chains in the Genus database with same CATH homology
 2BFR A;  5FSZ A;  4ZX9 A;  4ZY1 A;  3SII A;  4UML A;  4K0C A;  3IID A;  4JVV A;  3IJ3 A;  2AFC A;  5D8N A;  2J9A A;  3GQO A;  1LAM A;  4J5S A;  3SIH A;  1ZR3 A;  3EWQ A;  3V45 A;  3KQZ A;  3T8W A;  4TU0 A;  2FG1 A;  3EKE A;  3H8F A;  1LAN A;  5FSY A;  2FAV A;  1TY8 A;  4JLL A;  4ZYQ A;  1BPM A;  4ZX8 A;  4K3N A;  3GPQ A;  4ABK A;  2ACF A;  3SIJ A;  4JGK A;  1LAP A;  4ESS A;  2XD7 A;  5CMS A;  5DUS A;  1HJZ A;  3EWO A;  4J5Q A;  4JCA A;  3H8G A;  4GUA A;  4ETJ A;  2BFQ A;  5FSV A;  1TXZ A;  3KQX A;  2LGR A;  1LCP A;  5CB5 A;  3GQE A;  2EWB A;  4ETK A;  4R6T A;  4KSI A;  4ZI6 A;  5E3B A;  5HOL A;  3KR4 A;  4GVV A;  3IIF A;  4J4Z A;  3Q71 A;  1SPV A;  4D86 A;  2DX6 A;  4ABL A;  3VFQ A;  3KZW A;  2X47 A;  4X2T A;  1ZR5 A;  3EW5 A;  1BPN A;  2EEE A;  3EWP A;  3GPG A;  4IQY A;  4ZY2 A;  4KYB A;  3ETI A;  3EJF A;  1VHU A;  3EJG A;  3Q6Z A;  4ZY0 A;  5AIL A;  2VRI A;  3EWR A;  3JZT A;  4GVW A;  5FSU A;  3JRU A;  5CBM A;  1GYT A;  3V2B A;  3KR5 A;  4R7M A;  2FXK A;  4J5R A;  1BLL E;  1NJR A;  3GPO A;  3H8E A;  5FSX A;  5HIH A;  3PEI A;  4R76 A;  1YD9 A;  3SIG A;  2L8R A;  5CB3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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