2LJ7A

3d solution structure of plant defensin lc-def
Total Genus 3
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
3
sequence length
47
structure length
47
Chain Sequence
KTCENLSDSFKGPCIPDGNCNKHCKEKEHLLSGRCRDDFRCWCTRNC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Antimicrobial protein
molecule keywords Defensin Lc-def
publication title Heterologous expression and solution structure of defensin from lentil Lens culinaris.
pubmed doi rcsb
source organism Lens culinaris subsp. culinaris
total genus 3
structure length 47
sequence length 47
ec nomenclature
pdb deposition date 2011-09-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00304 Gamma-thionin Gamma-thionin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 2lj7A00
2LT8A 4AAZA 1LQHA 2YC1C 1JZAA 1PTXA 2LJ7A 1SN4A 1BMRA 1P0AA 1DQ7A 1P00A 4UJ0A 2E0HA 1GPSA 5CY0A 2LI7A 1WWNA 1I2UA 3E7RL 2MZ0A 1ZU3A 1ZVGA 2BRZA 2E3FA 1JZBA 2ATBA 1SN1A 1NRAA 1NH5A 2LKBA 2N2QA 4KYPA 1ZFUA 2KJAA 2ASCA 1T7AA 2KBHA 1T7EA 1ZYVA 2LR3A 1PX9A 1C56A 1SEGA 4AB0A 1L4VA 1NRBA 1T0ZA 2I61A 1I6FA 1B3CA 1MR4A 1NE5A 2NY9X 1SNBA 2YBRC 1CN2A 2B68A 2KBKA 1LQQA 1N4NA 1B7DA 1PE4A 2N69A 2A7TA 1ZYWA 4CQKA 2LY5A 1TI5A 2NY8X 1ZVEA 5KK4A 1JKZA 1BRZA 2KSKA 1WT7A 1ZUTA 2N2RA 2KBJA 2E3GA 1LQIA 2YEOA 1DJTA 1WMTA 1T1TA 3PSMA 2SN3A 1I2VA 1C55A 1FH3A 4HHFA 4HE7A 2LJMA 1OZZA 1BK8A 1I6GA 2B3CA 1AYJA 4V1DC 2KYQA 1MYNA 1KV0A 1T7BA 2KGQA 1AHOA 2KPYA 1ICAA 1VNBA 1NPIA 2LY6A 1CHZA 1JXCA 2M8BB 2N66A 1OMYA 3E7UX 1GPTA 1BCGA 1VNAA 2GL1A 4AEIA
chains in the Genus database with same CATH superfamily
2LT8A 4AAZA 1LQHA 2YC1C 3ATVA 1JZAA 3KOYA 1PTXA 2QWQA 1XRSB 3LDOA 1BUPA 2LJ7A 3KP0A 3QFPA 5AQYA 1S3XA 4GNIA 4FSVA 3JXUA 3LDNA 2E8AA 3SF4D 2K35A 1SN4A 1DKGD 3I33A 4H5WA 1P0AA 3FZMA 1DQ7A 1P00A 4UJ0A 2E0HA 5AQTA 1BMRA 1NGDA 5CY0A 1GPSA 2LI7A 3KOWA 1WWNA 3ATUA 1I2UA 3LDPA 2YILA 3CW4A 3E7RL 2BUPA 1NGHA 2MZ0A 2E2FA 1ZU3A 1ZVGA 2BRZA 3KOXA 3L6QA 2QXLA 2E3FA 1JZBA 2ATBA 1BA1A 1BA0A 1SN1A 2MBKA 1NRAA 1NH5A 2LKBA 2N2QA 3FE1A 4KYPA 3HSCA 1ZFUA 3GDQA 4FL9A 5BN9A 2ASCA 2KJAA 1T7AA 3A8YA 5AQKA 1NGCA 5EXWA 1QQNA 1KAYA 2LN8A 2KBHA 1T7EA 3D2FB 2QWMA 3FZFA 5FPDA 1ZYVA 3D2EB 2LR3A 4UADE 3KC6A 1PX9A 1C56A 1SEGA 4AB0A 1L4VA 5AQLA 2JDQD 1NRBA 3KHWA 1T0ZA 5AQOA 1NGGA 1POIA 2YIPA 2I61A 1I6FA 1B3CA 2GMOA 1MR4A 1NE5A 2KHOA 1NGJA 5BN8A 1HJOA 2NY9X 2QWPA 3QFUA 1SNBA 1NGIA 3FZKA 2YBRC 1CN2A 5AQQA 2B68A 5AR0A 3QMLA 4H5TA 3L4IA 5BPNA 3C7NA 2KBKA 5AQPA 4UAEF 1LQQA 1ATRA 2QWLA 1N4NA 1B7DA 3GKUA 5F0XA 5AQVA 1K8BA 1UGLA 1PE4A 2G2KA 4IO8A 2N69A 2A7TA 1YUWA 1KAXA 1ZYWA 2LY5A 3QI7A 1TI5A 5FPNA 4CQKA 2NY8X 1ZVEA 2V7ZA 5F1XA 4KBOA 5EY4A 5KK4A 1JKZA 3KOZA 1BRZA 2VY6A 4HWIA 2KSKA 1WT7A 1ZUTA 2E88A 5AQJA 5AQMA 2N2RA 2KBJA 2QW9A 3D2FA 2E3GA 5AQGA 5AQZA 5BPMA 1QQOA 5BPLA 1LQIA 3FZLA 3AY9A 1NGFA 1DJTA 1ATSA 2YEOA 1WMTA 1KAZA 1T1TA 5FPMA 3PSMA 1QQMA 3KVGA 2SN3A 4H5NA 5EVZA 1I2VA 5AQWA 1C55A 1FH3A 4HHFA 2QWRA 5AQUA 1HX1A 3FZHA 5AQHA 4H5RA 2D56A 4HE7A 4AEIA 2LJMA 1HPMA 1OZZA 3R2VA 3BK3C 5AQFA 1BK8A 3KP1A 5F2RA 1I6GA 2B3CA 1AYJA 4UAFE 4V1DC 2KYQA 4H5VA 5AQNA 5FPEA 1MYNA 2YIOA 3C7NB 5AQSA 2MN5A 2QWOA 3CQXA 1KV0A 1T7BA 2KGQA 1NGBA 1AHOA 3LDQA 3M3ZA 2KPYA 3IUCA 1ICAA 1VNBA 1NPIA 2LY6A 3GL1A 2QWNA 3L56A 3LDLA 5AQRA 1CHZA 3D2EA 1JXCA 2M8BB 2N66A 5AQXA 1OMYA 3E7UX 5AQIA 1GPTA 5EX5A 1BCGA 1VNAA 1NGAA 2GL1A 1NGEA
chains in the Genus database with same CATH topology
2LT8A 4AAZA 1LQHA 2YC1C 1JZAA 1PTXA 2LJ7A 1SN4A 1BMRA 1P0AA 1DQ7A 1P00A 4UJ0A 2E0HA 1GPSA 5CY0A 2LI7A 1WWNA 1I2UA 3E7RL 2MZ0A 1ZU3A 1ZVGA 2BRZA 2E3FA 1JZBA 2ATBA 1SN1A 1NRAA 1NH5A 2LKBA 2N2QA 4KYPA 1ZFUA 2KJAA 2ASCA 1T7AA 2KBHA 1T7EA 1ZYVA 2LR3A 1PX9A 1C56A 1SEGA 4AB0A 1L4VA 1NRBA 1T0ZA 2I61A 1I6FA 1B3CA 1MR4A 1NE5A 2NY9X 1SNBA 2YBRC 1CN2A 2B68A 2KBKA 1LQQA 1N4NA 1B7DA 1PE4A 2N69A 2A7TA 1ZYWA 4CQKA 2LY5A 1TI5A 2NY8X 1ZVEA 5KK4A 1JKZA 1BRZA 2KSKA 1WT7A 1ZUTA 2N2RA 2KBJA 2E3GA 1LQIA 2YEOA 1DJTA 1WMTA 1T1TA 3PSMA 2SN3A 1I2VA 1C55A 1FH3A 4HHFA 4HE7A 2LJMA 1OZZA 1BK8A 1I6GA 2B3CA 1AYJA 4V1DC 2KYQA 1MYNA 1KV0A 1T7BA 2KGQA 1AHOA 2KPYA 1ICAA 1VNBA 1NPIA 2LY6A 1CHZA 1JXCA 2M8BB 2N66A 1OMYA 3E7UX 1GPTA 1BCGA 1VNAA 2GL1A 4AEIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2LT8 A;  4AAZ A;  1LQH A;  2YC1 C;  1JZA A;  1PTX A;  2LJ7 A;  1SN4 A;  1BMR A;  1P0A A;  1DQ7 A;  1P00 A;  4UJ0 A;  2E0H A;  1GPS A;  5CY0 A;  2LI7 A;  1WWN A;  1I2U A;  3E7R L;  2MZ0 A;  1ZU3 A;  1ZVG A;  2BRZ A;  2E3F A;  1JZB A;  2ATB A;  1SN1 A;  1NRA A;  1NH5 A;  2LKB A;  2N2Q A;  4KYP A;  1ZFU A;  2KJA A;  2ASC A;  1T7A A;  2KBH A;  1T7E A;  1ZYV A;  2LR3 A;  1PX9 A;  1C56 A;  1SEG A;  4AB0 A;  1L4V A;  1NRB A;  1T0Z A;  2I61 A;  1I6F A;  1B3C A;  1MR4 A;  1NE5 A;  2NY9 X;  1SNB A;  2YBR C;  1CN2 A;  2B68 A;  2KBK A;  1LQQ A;  1N4N A;  1B7D A;  1PE4 A;  2N69 A;  2A7T A;  1ZYW A;  4CQK A;  2LY5 A;  1TI5 A;  2NY8 X;  1ZVE A;  5KK4 A;  1JKZ A;  1BRZ A;  2KSK A;  1WT7 A;  1ZUT A;  2N2R A;  2KBJ A;  2E3G A;  1LQI A;  2YEO A;  1DJT A;  1WMT A;  1T1T A;  3PSM A;  2SN3 A;  1I2V A;  1C55 A;  1FH3 A;  4HHF A;  4HE7 A;  2LJM A;  1OZZ A;  1BK8 A;  1I6G A;  2B3C A;  1AYJ A;  4V1D C;  2KYQ A;  1MYN A;  1KV0 A;  1T7B A;  2KGQ A;  1AHO A;  2KPY A;  1ICA A;  1VNB A;  1NPI A;  2LY6 A;  1CHZ A;  1JXC A;  2M8B B;  2N66 A;  1OMY A;  3E7U X;  1GPT A;  1BCG A;  1VNA A;  2GL1 A;  4AEI A; 
#chains in the Genus database with same CATH topology
 2LT8 A;  4AAZ A;  1LQH A;  2YC1 C;  3ATV A;  1JZA A;  3KOY A;  1PTX A;  2QWQ A;  1XRS B;  3LDO A;  1BUP A;  2LJ7 A;  3KP0 A;  3QFP A;  5AQY A;  1S3X A;  4GNI A;  4FSV A;  3JXU A;  3LDN A;  2E8A A;  3SF4 D;  2K35 A;  1SN4 A;  1DKG D;  3I33 A;  4H5W A;  1P0A A;  3FZM A;  1DQ7 A;  1P00 A;  4UJ0 A;  2E0H A;  5AQT A;  1BMR A;  1NGD A;  5CY0 A;  1GPS A;  2LI7 A;  3KOW A;  1WWN A;  3ATU A;  1I2U A;  3LDP A;  2YIL A;  3CW4 A;  3E7R L;  2BUP A;  1NGH A;  2MZ0 A;  2E2F A;  1ZU3 A;  1ZVG A;  2BRZ A;  3KOX A;  3L6Q A;  2QXL A;  2E3F A;  1JZB A;  2ATB A;  1BA1 A;  1BA0 A;  1SN1 A;  2MBK A;  1NRA A;  1NH5 A;  2LKB A;  2N2Q A;  3FE1 A;  4KYP A;  3HSC A;  1ZFU A;  3GDQ A;  4FL9 A;  5BN9 A;  2ASC A;  2KJA A;  1T7A A;  3A8Y A;  5AQK A;  1NGC A;  5EXW A;  1QQN A;  1KAY A;  2LN8 A;  2KBH A;  1T7E A;  3D2F B;  2QWM A;  3FZF A;  5FPD A;  1ZYV A;  3D2E B;  2LR3 A;  4UAD E;  3KC6 A;  1PX9 A;  1C56 A;  1SEG A;  4AB0 A;  1L4V A;  5AQL A;  2JDQ D;  1NRB A;  3KHW A;  1T0Z A;  5AQO A;  1NGG A;  1POI A;  2YIP A;  2I61 A;  1I6F A;  1B3C A;  2GMO A;  1MR4 A;  1NE5 A;  2KHO A;  1NGJ A;  5BN8 A;  1HJO A;  2NY9 X;  2QWP A;  3QFU A;  1SNB A;  1NGI A;  3FZK A;  2YBR C;  1CN2 A;  5AQQ A;  2B68 A;  5AR0 A;  3QML A;  4H5T A;  3L4I A;  5BPN A;  3C7N A;  2KBK A;  5AQP A;  4UAE F;  1LQQ A;  1ATR A;  2QWL A;  1N4N A;  1B7D A;  3GKU A;  5F0X A;  5AQV A;  1K8B A;  1UGL A;  1PE4 A;  2G2K A;  4IO8 A;  2N69 A;  2A7T A;  1YUW A;  1KAX A;  1ZYW A;  2LY5 A;  3QI7 A;  1TI5 A;  5FPN A;  4CQK A;  2NY8 X;  1ZVE A;  2V7Z A;  5F1X A;  4KBO A;  5EY4 A;  5KK4 A;  1JKZ A;  3KOZ A;  1BRZ A;  2VY6 A;  4HWI A;  2KSK A;  1WT7 A;  1ZUT A;  2E88 A;  5AQJ A;  5AQM A;  2N2R A;  2KBJ A;  2QW9 A;  3D2F A;  2E3G A;  5AQG A;  5AQZ A;  5BPM A;  1QQO A;  5BPL A;  1LQI A;  3FZL A;  3AY9 A;  1NGF A;  1DJT A;  1ATS A;  2YEO A;  1WMT A;  1KAZ A;  1T1T A;  5FPM A;  3PSM A;  1QQM A;  3KVG A;  2SN3 A;  4H5N A;  5EVZ A;  1I2V A;  5AQW A;  1C55 A;  1FH3 A;  4HHF A;  2QWR A;  5AQU A;  1HX1 A;  3FZH A;  5AQH A;  4H5R A;  2D56 A;  4HE7 A;  4AEI A;  2LJM A;  1HPM A;  1OZZ A;  3R2V A;  3BK3 C;  5AQF A;  1BK8 A;  3KP1 A;  5F2R A;  1I6G A;  2B3C A;  1AYJ A;  4UAF E;  4V1D C;  2KYQ A;  4H5V A;  5AQN A;  5FPE A;  1MYN A;  2YIO A;  3C7N B;  5AQS A;  2MN5 A;  2QWO A;  3CQX A;  1KV0 A;  1T7B A;  2KGQ A;  1NGB A;  1AHO A;  3LDQ A;  3M3Z A;  2KPY A;  3IUC A;  1ICA A;  1VNB A;  1NPI A;  2LY6 A;  3GL1 A;  2QWN A;  3L56 A;  3LDL A;  5AQR A;  1CHZ A;  3D2E A;  1JXC A;  2M8B B;  2N66 A;  5AQX A;  1OMY A;  3E7U X;  5AQI A;  1GPT A;  5EX5 A;  1BCG A;  1VNA A;  1NGA A;  2GL1 A;  1NGE A; 
#chains in the Genus database with same CATH homology
 2LT8 A;  4AAZ A;  1LQH A;  2YC1 C;  1JZA A;  1PTX A;  2LJ7 A;  1SN4 A;  1BMR A;  1P0A A;  1DQ7 A;  1P00 A;  4UJ0 A;  2E0H A;  1GPS A;  5CY0 A;  2LI7 A;  1WWN A;  1I2U A;  3E7R L;  2MZ0 A;  1ZU3 A;  1ZVG A;  2BRZ A;  2E3F A;  1JZB A;  2ATB A;  1SN1 A;  1NRA A;  1NH5 A;  2LKB A;  2N2Q A;  4KYP A;  1ZFU A;  2KJA A;  2ASC A;  1T7A A;  2KBH A;  1T7E A;  1ZYV A;  2LR3 A;  1PX9 A;  1C56 A;  1SEG A;  4AB0 A;  1L4V A;  1NRB A;  1T0Z A;  2I61 A;  1I6F A;  1B3C A;  1MR4 A;  1NE5 A;  2NY9 X;  1SNB A;  2YBR C;  1CN2 A;  2B68 A;  2KBK A;  1LQQ A;  1N4N A;  1B7D A;  1PE4 A;  2N69 A;  2A7T A;  1ZYW A;  4CQK A;  2LY5 A;  1TI5 A;  2NY8 X;  1ZVE A;  5KK4 A;  1JKZ A;  1BRZ A;  2KSK A;  1WT7 A;  1ZUT A;  2N2R A;  2KBJ A;  2E3G A;  1LQI A;  2YEO A;  1DJT A;  1WMT A;  1T1T A;  3PSM A;  2SN3 A;  1I2V A;  1C55 A;  1FH3 A;  4HHF A;  4HE7 A;  2LJM A;  1OZZ A;  1BK8 A;  1I6G A;  2B3C A;  1AYJ A;  4V1D C;  2KYQ A;  1MYN A;  1KV0 A;  1T7B A;  2KGQ A;  1AHO A;  2KPY A;  1ICA A;  1VNB A;  1NPI A;  2LY6 A;  1CHZ A;  1JXC A;  2M8B B;  2N66 A;  1OMY A;  3E7U X;  1GPT A;  1BCG A;  1VNA A;  2GL1 A;  4AEI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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