2LOYA

Refined miminal constraint solution nmr structure of translationally-controlled tumor protein (tctp) from caenorhabditis elegans, northeast structural genomics consortium target wr73
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
183
structure length
183
Chain Sequence
MLIYKDIFTDDELSSDSFPMKLVDDLVYEFKGKHVVRKEGEIVLAGSNPSAEEGAEDDGSDEHVERGIDIVLNHKLVEMNCYEDASMFKAYIKKFMKNVIDHMEKNNRDKADVDAFKKKIQGWVVSLLAKDRFKNLAFFIGERAAEGAENGQVAIIEYRDVDGTEVPTLMLVKEAIIEEKCLE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Metal binding protein
molecule keywords Translationally-controlled tumor protein homolog
publication title Determination of solution structures of proteins up to 40 kDa using CS-Rosetta with sparse NMR data from deuterated samples.
pubmed doi rcsb
source organism Caenorhabditis elegans
total genus 40
structure length 183
sequence length 183
ec nomenclature
pdb deposition date 2012-01-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00838 TCTP Translationally controlled tumour protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.150.10 Mainly Beta Beta Complex Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A 2loyA00
2KWBA 2HR9A 3EBMA 2FU5A 1YZ1A 2LOYA 1FWQA 3P3KA 1H6QA 1TXJA 1H7YA 1HXRA
chains in the Genus database with same CATH superfamily
4V30A 2KWBA 2YKGA 3HCJA 3OG8A 2LOYA 4V2ZA 5F9HA 2K8DA 3LRRA 4AY2A 4BPBA 1H6QA 4A2VA 3ZD7A 4TZCA 3WX2A 1H7YA 5E3HA 2FU5A 4CI3B 1FWQA 4CI2B 5F98A 3ZD6A 3P3KA 4V2YA 5AMHA 3HCIA 3E0OA 1HXRA 3EQTA 3HCGA 3EBMA 4CI1B 1YZ1A 2KZNA 2W4RA 5F9FA 3DJMA 1L1DA 3E0MA 3WX1A 3GA3A 3MAOA 1TXJA 3CEZA 2QFDA 2QFBA 2RQAA 2HR9A 2LVLA 3HCHA 4TZUA 4TZ4C 4V31A 3LRNA 3CXKA 4A2XA 2RMJA 3NCUA 2RQBA 2KV1A 3FACA
chains in the Genus database with same CATH topology
2KWBA 2YKGA 3OG8A 2LOYA 5F9HA 3LRRA 4BPBA 1H6QA 4A2VA 3ZD7A 1H7YA 5E3HA 2FU5A 1FWQA 5F98A 3ZD6A 3P3KA 1HXRA 3EQTA 3EBMA 1YZ1A 2W4RA 5F9FA 3DJMA 3GA3A 1TXJA 2QFDA 2QFBA 2RQAA 2HR9A 2LVLA 4A2XA 4AY2A 3LRNA 2RMJA 3NCUA 2RQBA 3FACA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KWB A;  2HR9 A;  3EBM A;  2FU5 A;  1YZ1 A;  2LOY A;  1FWQ A;  3P3K A;  1H6Q A;  1TXJ A;  1H7Y A;  1HXR A; 
#chains in the Genus database with same CATH topology
 4V30 A;  2KWB A;  2YKG A;  3HCJ A;  3OG8 A;  2LOY A;  4V2Z A;  5F9H A;  2K8D A;  3LRR A;  4AY2 A;  4BPB A;  1H6Q A;  4A2V A;  3ZD7 A;  4TZC A;  3WX2 A;  1H7Y A;  5E3H A;  2FU5 A;  4CI3 B;  1FWQ A;  4CI2 B;  5F98 A;  3ZD6 A;  3P3K A;  4V2Y A;  5AMH A;  3HCI A;  3E0O A;  1HXR A;  3EQT A;  3HCG A;  3EBM A;  4CI1 B;  1YZ1 A;  2KZN A;  2W4R A;  5F9F A;  3DJM A;  1L1D A;  3E0M A;  3WX1 A;  3GA3 A;  3MAO A;  1TXJ A;  3CEZ A;  2QFD A;  2QFB A;  2RQA A;  2HR9 A;  2LVL A;  3HCH A;  4TZU A;  4TZ4 C;  4V31 A;  3LRN A;  3CXK A;  4A2X A;  2RMJ A;  3NCU A;  2RQB A;  2KV1 A;  3FAC A; 
#chains in the Genus database with same CATH homology
 2KWB A;  2YKG A;  3OG8 A;  2LOY A;  5F9H A;  3LRR A;  4BPB A;  1H6Q A;  4A2V A;  3ZD7 A;  1H7Y A;  5E3H A;  2FU5 A;  1FWQ A;  5F98 A;  3ZD6 A;  3P3K A;  1HXR A;  3EQT A;  3EBM A;  1YZ1 A;  2W4R A;  5F9F A;  3DJM A;  3GA3 A;  1TXJ A;  2QFD A;  2QFB A;  2RQA A;  2HR9 A;  2LVL A;  4A2X A;  4AY2 A;  3LRN A;  2RMJ A;  3NCU A;  2RQB A;  3FAC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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