2M5OA

Solution nmr structure ctd domain of nfu1 iron-sulfur cluster scaffold homolog from homo sapiens, northeast structural genomics consortium (nesg) target hr2876c
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
97
structure length
97
Chain Sequence
MGHHHHHHSHMGSEEDDGVVAMIKELLDTRIRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQFYIPEVEGVEQVMDDESD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Biosynthetic protein
molecule keywords NFU1 iron-sulfur cluster scaffold homolog, mitochondrial
publication title Solution NMR Structure CTD domain of NFU1 Iron-Sulfur Cluster Scaffold Homolog from Homo sapiens, Northeast Structural Genomics Consortium (NESG) Target HR2876C
rcsb
source organism Homo sapiens
total genus 26
structure length 97
sequence length 97
ec nomenclature
pdb deposition date 2013-03-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01106 NifU NifU-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.300.130 Alpha Beta 2-Layer Sandwich GMP Synthetase; Chain A, domain 3 Fe-S cluster assembly (FSCA) 2m5oA01
2CU6A 2JNVA 1TH5A 2M5HA 3UX3A 3CQ3A 1XHJA 1VEHA 1WCJA 3LNOA 2Z51A 3UX2A 3CQ2A 3CQ1A 2M5OA 1UWDA
chains in the Genus database with same CATH superfamily
3VNQA 1N2FA 1MXBA 4I9FA 1V25A 4DV0C 2D27A 4IZ6A 2P2BA 3FCCA 1N32C 4LFCC 3DAYA 4DV7C 3DLPX 2KZFA 2UXBC 3E7XA 5A19A 5BSWA 4DCTA 3C5EA 3R9WA 3EQ6A 4BCAA 4GXQA 2OPLB 2KDNA 4KTTA 4OXIA 2NCLA 4PHTA 4RVNA 3B7WA 3UZ0A 4RVOA 1O92A 2P2MA 3I08A 3CW9A 4D4GA 4DR7C 4X66C 5GTDA 5IFIA 2QVZX 2CY1A 4PUGA 4D56A 4AQYC 4B3RC 1BA3A 3NPDA 2DHMA 5A1GA 5KEIA 1N36C 1XS3A 4DV6C 3A4IA 3UOWA 5K8FA 4D4IA 1J5EC 1UWDA 4FUTA 1ZB9A 2ZM6C 2AYAA 5BR8C 2JNVA 4GKJC 4ZJZA 3IEUA 2CU6A 2QVXX 3PESA 1P4EC 2P2FA 1IBLC 4RLQA 1XRBA 1KKGA 4R1LA 1AMUA 2ATWA 3K6RA 4MH4A 1XHJA 4JI8C 4GS5A 4JI4C 2E8EA 5KYTA 1QWIA 2E5LC 1XRAA 1EGAA 1MXCA 4X62C 5DV9A 3CW8X 3NYQA 4JI1C 3N2QA 4NOZA 4LF8C 4DR4C 1WH9A 5LMUC 3VNRA 3L8CA 2D28C 3LNOA 4RM3A 4LFAC 3AF5A 4L2ZA 4NDNA 3L95X 4DCSA 2DPLA 4R1MA 1IBKC 1LCIA 3JAMD 4LF4C 2ASBA 4YHHC 3CJEA 4DV2C 2QW0X 5T8SA 1O9TA 5T8TA 2UXDC 1O90A 5BSUA 3TR3A 5H9UA 3TDEA 4TPSB 4B3SC 3PROC 4JI0C 2YWCA 5FLXD 4LF7C 3TUFA 4DV5C 1USPA 1K0RA 2D1TA 2F4VC 3UX3A 4DV4C 2OBVA 1MXAA 3ETOA 3UEBA 4DUZC 3CQ3A 1RG9A 4BC9A 4K0BA 4WS9A 2HHHC 4BBYA 2D1RA 4I9GA 2MCQA 3A26A 4G1IA 2YX1A 3G7SA 3R44A 4EATA 3GR0A 2JMPA 2BH1X 1XMQC 2YCBA 2HJGA 3TQIA 1NY8A 2PN2A 1PU1A 3S82A 2VQEC 4DR1C 2KZ0A 2YWBA 4D57A 4DCUA 1XRCA 2ZZNA 1USPB 3GR1A 4RMNA 1PA4A 3OTOC 1PG3A 3AF6A 4LF6C 5KYVA 1M6XC 4DCVA 2MM9A 3CQ1A 2MMAB 2PROA 4LE5A 2M5HA 3N54B 2E7GA 4NXNC 1P7LA 4IR7A 4PROC 2UXCC 2M5OA 3A9UA 4KTVA 4ODJA 5AE2A 2QL8A 1ML8A 5CZXA 5CZVA 5IWAC 4DR2C 4FTFA 1JOSA 4DUYC 4LF5C 4B3MC 4JYAC 4YY3C 4DV3C 2Y4OA 1XMOC 2V7BA 4K0KC 3T1HC 4DG9A 2P02A 3EERA 4ZLPA 5JRHA 4PUIA 4OX9C 3ETCA 4DV1C 1MD9A 3R9XA 4MTNA 4JI3C 1MDBA 4X64C 2PT7G 2Y4NA 3GPCA 4R0MA 4DR3C 2ZZMA 1P4EA 3J81D 2BJOA 1L2FA 1I94C 5LCIA 2QVYX 1T5DX 5AE1A 2VSQA 1PG4A 4DR6C 3LUSA 5AE3A 1V60A 3I07A 1HNXC 1N33C 5BUSA 2VZEA 5BSMA 2EGTA 2DYJA 4U5YD 3J80D 3LNVA 3CQ2A 4GKKC 2E0GA 3IPLA 1NYEA 2CXCA 3GKUA 4ISBA 3FCEA 5A2QD 1WCJA 3AY0A 3RG2A 4DG8A 4G37A 2Z51A 5E7QA 4L7IA 2Y27A 4LF9C 1FLOA 1XNQC 2UU9C 2D1QA 1RY2A 3A9VA 3IEVA 2OO4A 1HNZC 4JI2C 4JI6C 5BURA 1QM4A 1IB8A 5K85A 1YJ7A 2UUCC 2WD9A 1HH2P 3IMLA 2ONFA 1TH5A 1T5HX 1FJGC 5ADZA 1XNRC 4XX2A 2P2JA 3T1YC 4NXMC 3E7WA 1HR0C 2XR1A 5BUQA 1O93A 3SO4A 4LFBC 4JV5C 1HNWC 4RLFA 4B3TC 3DHVA 2WP0C 1UKKA 4GXRA 3VNSA 4DR5C 2E8FA 1LQLA 3UX2A 3PBKA 4HPVA 4G36A 1FUGA 1WF3A 1MDFA 4L4QA 4PUHA 3NYRA 4BSZA 5BSVA 3KXWA 1VEHA 1V26A 4OYCA 3LGXA 2P20A 3NI2A 5LMNC 5BSRA 1IBMC 3O2EA 5IT9D 2D7VA 1M6XA 1VLAA 2VQFC 4FUQA 4RM2A 4JM1A 2E8CA 2OPLA 3RV2A 4PZPA 4JI7C 5BSTA 2P2QA 2D1SA 2UUBC 3LAXA 1GPMA 3H2TA 1ULTA 4WV3A 1MKYA 1ZB8A 5A1IA 4KHPC 4BC7A 3A25A 1N34C 4X65C 4JI5C 2UUAC
chains in the Genus database with same CATH topology
2CU6A 2JNVA 1TH5A 2M5HA 3UX3A 3CQ3A 1XHJA 1VEHA 1WCJA 3LNOA 2Z51A 3UX2A 3CQ2A 3CQ1A 2M5OA 1UWDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2CU6 A;  2JNV A;  1TH5 A;  2M5H A;  3UX3 A;  3CQ3 A;  1XHJ A;  1VEH A;  1WCJ A;  3LNO A;  2Z51 A;  3UX2 A;  3CQ2 A;  3CQ1 A;  2M5O A;  1UWD A; 
#chains in the Genus database with same CATH topology
 3VNQ A;  1N2F A;  1MXB A;  4I9F A;  1V25 A;  4DV0 C;  2D27 A;  4IZ6 A;  2P2B A;  3FCC A;  1N32 C;  4LFC C;  3DAY A;  4DV7 C;  3DLP X;  2KZF A;  2UXB C;  3E7X A;  5A19 A;  5BSW A;  4DCT A;  3C5E A;  3R9W A;  3EQ6 A;  4BCA A;  4GXQ A;  2OPL B;  2KDN A;  4KTT A;  4OXI A;  2NCL A;  4PHT A;  4RVN A;  3B7W A;  3UZ0 A;  4RVO A;  1O92 A;  2P2M A;  3I08 A;  3CW9 A;  4D4G A;  4DR7 C;  4X66 C;  5GTD A;  5IFI A;  2QVZ X;  2CY1 A;  4PUG A;  4D56 A;  4AQY C;  4B3R C;  1BA3 A;  3NPD A;  2DHM A;  5A1G A;  5KEI A;  1N36 C;  1XS3 A;  4DV6 C;  3A4I A;  3UOW A;  5K8F A;  4D4I A;  1J5E C;  1UWD A;  4FUT A;  1ZB9 A;  2ZM6 C;  2AYA A;  5BR8 C;  2JNV A;  4GKJ C;  4ZJZ A;  3IEU A;  2CU6 A;  2QVX X;  3PES A;  1P4E C;  2P2F A;  1IBL C;  4RLQ A;  1XRB A;  1KKG A;  4R1L A;  1AMU A;  2ATW A;  3K6R A;  4MH4 A;  1XHJ A;  4JI8 C;  4GS5 A;  4JI4 C;  2E8E A;  5KYT A;  1QWI A;  2E5L C;  1XRA A;  1EGA A;  1MXC A;  4X62 C;  5DV9 A;  3CW8 X;  3NYQ A;  4JI1 C;  3N2Q A;  4NOZ A;  4LF8 C;  4DR4 C;  1WH9 A;  5LMU C;  3VNR A;  3L8C A;  2D28 C;  3LNO A;  4RM3 A;  4LFA C;  3AF5 A;  4L2Z A;  4NDN A;  3L95 X;  4DCS A;  2DPL A;  4R1M A;  1IBK C;  1LCI A;  3JAM D;  4LF4 C;  2ASB A;  4YHH C;  3CJE A;  4DV2 C;  2QW0 X;  5T8S A;  1O9T A;  5T8T A;  2UXD C;  1O90 A;  5BSU A;  3TR3 A;  5H9U A;  3TDE A;  4TPS B;  4B3S C;  3PRO C;  4JI0 C;  2YWC A;  5FLX D;  4LF7 C;  3TUF A;  4DV5 C;  1USP A;  1K0R A;  2D1T A;  2F4V C;  3UX3 A;  4DV4 C;  2OBV A;  1MXA A;  3ETO A;  3UEB A;  4DUZ C;  3CQ3 A;  1RG9 A;  4BC9 A;  4K0B A;  4WS9 A;  2HHH C;  4BBY A;  2D1R A;  4I9G A;  2MCQ A;  3A26 A;  4G1I A;  2YX1 A;  3G7S A;  3R44 A;  4EAT A;  3GR0 A;  2JMP A;  2BH1 X;  1XMQ C;  2YCB A;  2HJG A;  3TQI A;  1NY8 A;  2PN2 A;  1PU1 A;  3S82 A;  2VQE C;  4DR1 C;  2KZ0 A;  2YWB A;  4D57 A;  4DCU A;  1XRC A;  2ZZN A;  1USP B;  3GR1 A;  4RMN A;  1PA4 A;  3OTO C;  1PG3 A;  3AF6 A;  4LF6 C;  5KYV A;  1M6X C;  4DCV A;  2MM9 A;  3CQ1 A;  2MMA B;  2PRO A;  4LE5 A;  2M5H A;  3N54 B;  2E7G A;  4NXN C;  1P7L A;  4IR7 A;  4PRO C;  2UXC C;  2M5O A;  3A9U A;  4KTV A;  4ODJ A;  5AE2 A;  2QL8 A;  1ML8 A;  5CZX A;  5CZV A;  5IWA C;  4DR2 C;  4FTF A;  1JOS A;  4DUY C;  4LF5 C;  4B3M C;  4JYA C;  4YY3 C;  4DV3 C;  2Y4O A;  1XMO C;  2V7B A;  4K0K C;  3T1H C;  4DG9 A;  2P02 A;  3EER A;  4ZLP A;  5JRH A;  4PUI A;  4OX9 C;  3ETC A;  4DV1 C;  1MD9 A;  3R9X A;  4MTN A;  4JI3 C;  1MDB A;  4X64 C;  2PT7 G;  2Y4N A;  3GPC A;  4R0M A;  4DR3 C;  2ZZM A;  1P4E A;  3J81 D;  2BJO A;  1L2F A;  1I94 C;  5LCI A;  2QVY X;  1T5D X;  5AE1 A;  2VSQ A;  1PG4 A;  4DR6 C;  3LUS A;  5AE3 A;  1V60 A;  3I07 A;  1HNX C;  1N33 C;  5BUS A;  2VZE A;  5BSM A;  2EGT A;  2DYJ A;  4U5Y D;  3J80 D;  3LNV A;  3CQ2 A;  4GKK C;  2E0G A;  3IPL A;  1NYE A;  2CXC A;  3GKU A;  4ISB A;  3FCE A;  5A2Q D;  1WCJ A;  3AY0 A;  3RG2 A;  4DG8 A;  4G37 A;  2Z51 A;  5E7Q A;  4L7I A;  2Y27 A;  4LF9 C;  1FLO A;  1XNQ C;  2UU9 C;  2D1Q A;  1RY2 A;  3A9V A;  3IEV A;  2OO4 A;  1HNZ C;  4JI2 C;  4JI6 C;  5BUR A;  1QM4 A;  1IB8 A;  5K85 A;  1YJ7 A;  2UUC C;  2WD9 A;  1HH2 P;  3IML A;  2ONF A;  1TH5 A;  1T5H X;  1FJG C;  5ADZ A;  1XNR C;  4XX2 A;  2P2J A;  3T1Y C;  4NXM C;  3E7W A;  1HR0 C;  2XR1 A;  5BUQ A;  1O93 A;  3SO4 A;  4LFB C;  4JV5 C;  1HNW C;  4RLF A;  4B3T C;  3DHV A;  2WP0 C;  1UKK A;  4GXR A;  3VNS A;  4DR5 C;  2E8F A;  1LQL A;  3UX2 A;  3PBK A;  4HPV A;  4G36 A;  1FUG A;  1WF3 A;  1MDF A;  4L4Q A;  4PUH A;  3NYR A;  4BSZ A;  5BSV A;  3KXW A;  1VEH A;  1V26 A;  4OYC A;  3LGX A;  2P20 A;  3NI2 A;  5LMN C;  5BSR A;  1IBM C;  3O2E A;  5IT9 D;  2D7V A;  1M6X A;  1VLA A;  2VQF C;  4FUQ A;  4RM2 A;  4JM1 A;  2E8C A;  2OPL A;  3RV2 A;  4PZP A;  4JI7 C;  5BST A;  2P2Q A;  2D1S A;  2UUB C;  3LAX A;  1GPM A;  3H2T A;  1ULT A;  4WV3 A;  1MKY A;  1ZB8 A;  5A1I A;  4KHP C;  4BC7 A;  3A25 A;  1N34 C;  4X65 C;  4JI5 C;  2UUA C; 
#chains in the Genus database with same CATH homology
 2CU6 A;  2JNV A;  1TH5 A;  2M5H A;  3UX3 A;  3CQ3 A;  1XHJ A;  1VEH A;  1WCJ A;  3LNO A;  2Z51 A;  3UX2 A;  3CQ2 A;  3CQ1 A;  2M5O A;  1UWD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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