2MAPA

Solution structure of the complex formed by the region 2 of e. coli sigmae and its cognate -10 promoter element non template strand tgtcaaa.
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
96
structure length
96
Chain Sequence
MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRLELV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription/dna
molecule keywords RNA polymerase sigma factor
publication title Structural basis for -10 promoter element melting by environmentally induced sigma factors.
pubmed doi rcsb
source organism Escherichia coli
total genus 28
structure length 96
sequence length 96
ec nomenclature
pdb deposition date 2013-07-16
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1740.10 Mainly Alpha Orthogonal Bundle Rna Polymerase Sigma Factor; Chain: A Rna Polymerase Sigma Factor; Chain: A 2mapA00
4FLOA 3A06A 5JC1A 4ZQFA 4FLRA 3CZGA 4OOFA 2C82A 3ZHYA 4ZQHA 1K5HA 3UERA 1MW0A 4KP7A 1T1SA 2JD2A 3T0YA 1G5AA 1ONNA 1Q0HA 2JCXA 4GAEA 2JCVA 3AUAA 1R0KA 4CXFA 2JCYA 3RASA 3CZLA 3AU9A 1MW1A 4Y67A 4RCVA 3R0IA 3ZHXA 3WQRA 1MVYA 4ZQEA 3AU8A 2Y1GA 3IIEA 5JO0A 4AYSA 1MW2A 3ZI0A 1H3LA 3ZHZA 5JMPA 1JVSA 1RP3A 1Q0LA 4NQWA 4AICA 3UCQA 2MAPA 1R0LA 4ZQGA 5JNLA 3ANMA 2Y1DA 5DULA 2Y1FA 3WQQA 3ANNA 1ZS2A 2WPGA 5JBIA 1JGIA 3A14A 2EGHA 1MW3A 5JAZA 3ANLA 3UEQA 2Y1CA 4FLQA 1ONOA 1OR7A 2O7GA 4A03A 1ONPA 1SC5A 3WQSB 2MAOA 5JMWA 1JG9A 3CZEA 4Y6RA 2JD1A 4Y6PA 4Y6SA 4FLSA 1S46A 4OOEA 3CZKA 2JD0A 4LUPA 1T1RA 4ZN6A 1Q0QA 2Y1EA
chains in the Genus database with same CATH superfamily
4FLOA 3A06A 3FUDA 3Q44A 2JV7A 4ZQFA 5JC1A 3FUEA 4GAAA 5HNFA 3FUIA 3EBIA 4FLRA 3CZGA 4Q4EA 4OOFA 4QPEA 4K5OA 4QMEA 3B7UX 3FTZA 4K5LA 2C82A 3ZHYA 3CHRA 2VLAA 4ZQHA 1K5HA 3FH7A 4R5XA 4XN4A 2R59A 3UERA 1MW0A 3FTWA 4KP7A 3JT1A 4ZQTA 1T1SA 3FTSA 4ARFA 2JD2A 3T0YA 4XN5A 5DLLA 1G5AA 1ONNA 2A7OA 2VJ8A 1Q0HA 2JCXA 4GAEA 4ZX5A 3FUMA 3T8VA 2R70A 4XMWA 4QUOA 3FTYA 3U9WA 2JCVA 4AR9A 3AUAA 3HW2A 1R0KA 3FH5A 4CXFA 2JCYA 3RASA 1X3WA 4JNDA 4XN8A 3FU3A 4RSYA 3CZLA 3FU5A 4XNBA 2HPOA 4RVBA 3FUKA 2WZGA 3AU9A 4X2UA 1H19A 1MW1A 5FWQA 4Y67A 4RCVA 3CHOA 4XNDA 4PVBA 2XQ0A 3FU0A 3R0IA 3FHEA 3ZHXA 2RJIA 3FU6A 3B3BA 4PW4A 3WQRA 2PUSA 4ZW3A 2WZFA 1MVYA 3FTXA 2QJ1A 4ZQEA 3FUNA 3AU8A 2Y1GA 3RC3A 4XMZA 4K5MA 3IIEA 4L2LA 4FCAA 3FUJA 5HNHA 5JO0A 4AYSA 5DYFA 1MW2A 3ZI0A 1H3LA 3CHQA 5JMPA 3ZHZA 4Q4IA 1JVSA 3FULA 3B2PA 2XPZA 2XPYA 3VVLA 2DQ6A 4AR1A 4ZX3A 1RP3A 1Q0LA 4NQWA 4AICA 3FH8A 4MKTA 3UCQA 3B7RL 1GW6A 2MAPA 1R0LA 3EBGA 3FUFA 4XO4A 3B7SA 4R5VA 4ZQGA 5JNLA 2PGGA 3ANMA 2Y1DA 5DULA 2Y1FA 4ZW8A 3ANNA 3WQQA 5BPPA 4XN1A 3KEDA 1ZS2A 2R72A 2WPGA 2QVWA 1JGIA 3FUHA 5JBIA 3A14A 4AR8A 2EGHA 3B7TA 1MW3A 3CIAA 5JAZA 3ANLA 5HLTA 4ZW6A 4K5NA 3UEQA 2Y1CA 4FLQA 4BKXA 4ZX4A 1ONOA 4XO3A 4XMTA 3CHPA 3QJXA 1OR7A 3Q43A 2DQMA 2O7GA 4ZW5A 3CXBA 4R7LA 4XN9A 4A03A 1ONPA 3B34A 1SC5A 4ZW7A 3WQSB 2MAOA 4J3BA 4XN7A 5JMWA 1JG9A 3B2XA 4R5TA 5EV7A 1X3ZA 3CZEA 4Y6RA 2JD1A 4Y6PA 3RC8A 4QIRA 4Y6SA 4FLSA 1S46A 2FFLA 5AENA 2B61A 3CHSA 4XMVA 4QHPA 4MS6A 2HPTA 4ZX6A 4PU2A 2ZXGA 4XN2A 3FTUA 4OOEA 2C5ZA 3CZKA 3B37A 1SQMA 1SG7A 4K5PA 2JD0A 3JSZA 4LUPA 3PUUA 4DPRA 4XNAA 1T1RA 1HS6A 3FTVA 4ZN6A 4XMXA 1Q0QA 2PL5A 3VVMA 2GTQA 4XO5A 3EBHA 2Y1EA 4XMUA
chains in the Genus database with same CATH topology
4FLOA 3A06A 3FUDA 3Q44A 2JV7A 4ZQFA 5JC1A 3FUEA 4GAAA 5HNFA 3FUIA 3EBIA 4FLRA 3CZGA 4Q4EA 4OOFA 4QPEA 4K5OA 4QMEA 3B7UX 3FTZA 4K5LA 2C82A 3ZHYA 3CHRA 2VLAA 4ZQHA 1K5HA 3FH7A 4R5XA 4XN4A 2R59A 3UERA 1MW0A 3FTWA 4KP7A 3JT1A 4ZQTA 1T1SA 3FTSA 4ARFA 2JD2A 3T0YA 4XN5A 5DLLA 1G5AA 1ONNA 2A7OA 2VJ8A 1Q0HA 2JCXA 4GAEA 4ZX5A 3FUMA 3T8VA 2R70A 4XMWA 4QUOA 3FTYA 3U9WA 2JCVA 4AR9A 3AUAA 1R0KA 3FH5A 4CXFA 2JCYA 3RASA 1X3WA 4JNDA 4XN8A 3FU3A 4RSYA 3CZLA 3FU5A 4XNBA 2HPOA 4RVBA 3FUKA 2WZGA 3AU9A 4X2UA 1H19A 1MW1A 5FWQA 4Y67A 4RCVA 3CHOA 4XNDA 4PVBA 2XQ0A 3FU0A 3R0IA 3FHEA 3ZHXA 2RJIA 3FU6A 3B3BA 4PW4A 3WQRA 2PUSA 4ZW3A 2WZFA 1MVYA 3FTXA 2QJ1A 4ZQEA 3FUNA 3AU8A 2Y1GA 3RC3A 4XMZA 4K5MA 3IIEA 4L2LA 4FCAA 3FUJA 5HNHA 5JO0A 4AYSA 5DYFA 1MW2A 3ZI0A 1H3LA 3CHQA 5JMPA 3ZHZA 4Q4IA 1JVSA 3FULA 3B2PA 2XPZA 2XPYA 3VVLA 2DQ6A 4AR1A 4ZX3A 1RP3A 1Q0LA 4NQWA 4AICA 3FH8A 4MKTA 3UCQA 3B7RL 1GW6A 2MAPA 1R0LA 3EBGA 3FUFA 4XO4A 3B7SA 4R5VA 4ZQGA 5JNLA 2PGGA 3ANMA 2Y1DA 5DULA 2Y1FA 4ZW8A 3ANNA 3WQQA 5BPPA 4XN1A 3KEDA 1ZS2A 2R72A 2WPGA 2QVWA 1JGIA 3FUHA 5JBIA 3A14A 4AR8A 2EGHA 3B7TA 1MW3A 3CIAA 5JAZA 3ANLA 5HLTA 4ZW6A 4K5NA 3UEQA 2Y1CA 4FLQA 4BKXA 4ZX4A 1ONOA 4XO3A 4XMTA 3CHPA 3QJXA 1OR7A 3Q43A 2DQMA 2O7GA 4ZW5A 4R7LA 4XN9A 4A03A 1ONPA 3B34A 1SC5A 4ZW7A 3WQSB 2MAOA 4J3BA 4XN7A 5JMWA 1JG9A 3B2XA 4R5TA 5EV7A 1X3ZA 3CZEA 4Y6RA 2JD1A 4Y6PA 3RC8A 4QIRA 4Y6SA 4FLSA 1S46A 2FFLA 5AENA 2B61A 3CHSA 4XMVA 4QHPA 4MS6A 2HPTA 4ZX6A 4PU2A 2ZXGA 4XN2A 3FTUA 4OOEA 2C5ZA 3CZKA 3B37A 1SQMA 1SG7A 4K5PA 2JD0A 3JSZA 4LUPA 3PUUA 4DPRA 4XNAA 1T1RA 1HS6A 3FTVA 4ZN6A 4XMXA 1Q0QA 2PL5A 3VVMA 2GTQA 4XO5A 3EBHA 2Y1EA 4XMUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4FLO A;  3A06 A;  5JC1 A;  4ZQF A;  4FLR A;  3CZG A;  4OOF A;  2C82 A;  3ZHY A;  4ZQH A;  1K5H A;  3UER A;  1MW0 A;  4KP7 A;  1T1S A;  2JD2 A;  3T0Y A;  1G5A A;  1ONN A;  1Q0H A;  2JCX A;  4GAE A;  2JCV A;  3AUA A;  1R0K A;  4CXF A;  2JCY A;  3RAS A;  3CZL A;  3AU9 A;  1MW1 A;  4Y67 A;  4RCV A;  3R0I A;  3ZHX A;  3WQR A;  1MVY A;  4ZQE A;  3AU8 A;  2Y1G A;  3IIE A;  5JO0 A;  4AYS A;  1MW2 A;  3ZI0 A;  1H3L A;  3ZHZ A;  5JMP A;  1JVS A;  1RP3 A;  1Q0L A;  4NQW A;  4AIC A;  3UCQ A;  2MAP A;  1R0L A;  4ZQG A;  5JNL A;  3ANM A;  2Y1D A;  5DUL A;  2Y1F A;  3WQQ A;  3ANN A;  1ZS2 A;  2WPG A;  5JBI A;  1JGI A;  3A14 A;  2EGH A;  1MW3 A;  5JAZ A;  3ANL A;  3UEQ A;  2Y1C A;  4FLQ A;  1ONO A;  1OR7 A;  2O7G A;  4A03 A;  1ONP A;  1SC5 A;  3WQS B;  2MAO A;  5JMW A;  1JG9 A;  3CZE A;  4Y6R A;  2JD1 A;  4Y6P A;  4Y6S A;  4FLS A;  1S46 A;  4OOE A;  3CZK A;  2JD0 A;  4LUP A;  1T1R A;  4ZN6 A;  1Q0Q A;  2Y1E A; 
#chains in the Genus database with same CATH topology
 4FLO A;  3A06 A;  3FUD A;  3Q44 A;  2JV7 A;  4ZQF A;  5JC1 A;  3FUE A;  4GAA A;  5HNF A;  3FUI A;  3EBI A;  4FLR A;  3CZG A;  4Q4E A;  4OOF A;  4QPE A;  4K5O A;  4QME A;  3B7U X;  3FTZ A;  4K5L A;  2C82 A;  3ZHY A;  3CHR A;  2VLA A;  4ZQH A;  1K5H A;  3FH7 A;  4R5X A;  4XN4 A;  2R59 A;  3UER A;  1MW0 A;  3FTW A;  4KP7 A;  3JT1 A;  4ZQT A;  1T1S A;  3FTS A;  4ARF A;  2JD2 A;  3T0Y A;  4XN5 A;  5DLL A;  1G5A A;  1ONN A;  2A7O A;  2VJ8 A;  1Q0H A;  2JCX A;  4GAE A;  4ZX5 A;  3FUM A;  3T8V A;  2R70 A;  4XMW A;  4QUO A;  3FTY A;  3U9W A;  2JCV A;  4AR9 A;  3AUA A;  3HW2 A;  1R0K A;  3FH5 A;  4CXF A;  2JCY A;  3RAS A;  1X3W A;  4JND A;  4XN8 A;  3FU3 A;  4RSY A;  3CZL A;  3FU5 A;  4XNB A;  2HPO A;  4RVB A;  3FUK A;  2WZG A;  3AU9 A;  4X2U A;  1H19 A;  1MW1 A;  5FWQ A;  4Y67 A;  4RCV A;  3CHO A;  4XND A;  4PVB A;  2XQ0 A;  3FU0 A;  3R0I A;  3FHE A;  3ZHX A;  2RJI A;  3FU6 A;  3B3B A;  4PW4 A;  3WQR A;  2PUS A;  4ZW3 A;  2WZF A;  1MVY A;  3FTX A;  2QJ1 A;  4ZQE A;  3FUN A;  3AU8 A;  2Y1G A;  3RC3 A;  4XMZ A;  4K5M A;  3IIE A;  4L2L A;  4FCA A;  3FUJ A;  5HNH A;  5JO0 A;  4AYS A;  5DYF A;  1MW2 A;  3ZI0 A;  1H3L A;  3CHQ A;  5JMP A;  3ZHZ A;  4Q4I A;  1JVS A;  3FUL A;  3B2P A;  2XPZ A;  2XPY A;  3VVL A;  2DQ6 A;  4AR1 A;  4ZX3 A;  1RP3 A;  1Q0L A;  4NQW A;  4AIC A;  3FH8 A;  4MKT A;  3UCQ A;  3B7R L;  1GW6 A;  2MAP A;  1R0L A;  3EBG A;  3FUF A;  4XO4 A;  3B7S A;  4R5V A;  4ZQG A;  5JNL A;  2PGG A;  3ANM A;  2Y1D A;  5DUL A;  2Y1F A;  4ZW8 A;  3ANN A;  3WQQ A;  5BPP A;  4XN1 A;  3KED A;  1ZS2 A;  2R72 A;  2WPG A;  2QVW A;  1JGI A;  3FUH A;  5JBI A;  3A14 A;  4AR8 A;  2EGH A;  3B7T A;  1MW3 A;  3CIA A;  5JAZ A;  3ANL A;  5HLT A;  4ZW6 A;  4K5N A;  3UEQ A;  2Y1C A;  4FLQ A;  4BKX A;  4ZX4 A;  1ONO A;  4XO3 A;  4XMT A;  3CHP A;  3QJX A;  1OR7 A;  3Q43 A;  2DQM A;  2O7G A;  4ZW5 A;  3CXB A;  4R7L A;  4XN9 A;  4A03 A;  1ONP A;  3B34 A;  1SC5 A;  4ZW7 A;  3WQS B;  2MAO A;  4J3B A;  4XN7 A;  5JMW A;  1JG9 A;  3B2X A;  4R5T A;  5EV7 A;  1X3Z A;  3CZE A;  4Y6R A;  2JD1 A;  4Y6P A;  3RC8 A;  4QIR A;  4Y6S A;  4FLS A;  1S46 A;  2FFL A;  5AEN A;  2B61 A;  3CHS A;  4XMV A;  4QHP A;  4MS6 A;  2HPT A;  4ZX6 A;  4PU2 A;  2ZXG A;  4XN2 A;  3FTU A;  4OOE A;  2C5Z A;  3CZK A;  3B37 A;  1SQM A;  1SG7 A;  4K5P A;  2JD0 A;  3JSZ A;  4LUP A;  3PUU A;  4DPR A;  4XNA A;  1T1R A;  1HS6 A;  3FTV A;  4ZN6 A;  4XMX A;  1Q0Q A;  2PL5 A;  3VVM A;  2GTQ A;  4XO5 A;  3EBH A;  2Y1E A;  4XMU A; 
#chains in the Genus database with same CATH homology
 4FLO A;  3A06 A;  3FUD A;  3Q44 A;  2JV7 A;  4ZQF A;  5JC1 A;  3FUE A;  4GAA A;  5HNF A;  3FUI A;  3EBI A;  4FLR A;  3CZG A;  4Q4E A;  4OOF A;  4QPE A;  4K5O A;  4QME A;  3B7U X;  3FTZ A;  4K5L A;  2C82 A;  3ZHY A;  3CHR A;  2VLA A;  4ZQH A;  1K5H A;  3FH7 A;  4R5X A;  4XN4 A;  2R59 A;  3UER A;  1MW0 A;  3FTW A;  4KP7 A;  3JT1 A;  4ZQT A;  1T1S A;  3FTS A;  4ARF A;  2JD2 A;  3T0Y A;  4XN5 A;  5DLL A;  1G5A A;  1ONN A;  2A7O A;  2VJ8 A;  1Q0H A;  2JCX A;  4GAE A;  4ZX5 A;  3FUM A;  3T8V A;  2R70 A;  4XMW A;  4QUO A;  3FTY A;  3U9W A;  2JCV A;  4AR9 A;  3AUA A;  1R0K A;  3FH5 A;  4CXF A;  2JCY A;  3RAS A;  1X3W A;  4JND A;  4XN8 A;  3FU3 A;  4RSY A;  3CZL A;  3FU5 A;  4XNB A;  2HPO A;  4RVB A;  3FUK A;  2WZG A;  3AU9 A;  4X2U A;  1H19 A;  1MW1 A;  5FWQ A;  4Y67 A;  4RCV A;  3CHO A;  4XND A;  4PVB A;  2XQ0 A;  3FU0 A;  3R0I A;  3FHE A;  3ZHX A;  2RJI A;  3FU6 A;  3B3B A;  4PW4 A;  3WQR A;  2PUS A;  4ZW3 A;  2WZF A;  1MVY A;  3FTX A;  2QJ1 A;  4ZQE A;  3FUN A;  3AU8 A;  2Y1G A;  3RC3 A;  4XMZ A;  4K5M A;  3IIE A;  4L2L A;  4FCA A;  3FUJ A;  5HNH A;  5JO0 A;  4AYS A;  5DYF A;  1MW2 A;  3ZI0 A;  1H3L A;  3CHQ A;  5JMP A;  3ZHZ A;  4Q4I A;  1JVS A;  3FUL A;  3B2P A;  2XPZ A;  2XPY A;  3VVL A;  2DQ6 A;  4AR1 A;  4ZX3 A;  1RP3 A;  1Q0L A;  4NQW A;  4AIC A;  3FH8 A;  4MKT A;  3UCQ A;  3B7R L;  1GW6 A;  2MAP A;  1R0L A;  3EBG A;  3FUF A;  4XO4 A;  3B7S A;  4R5V A;  4ZQG A;  5JNL A;  2PGG A;  3ANM A;  2Y1D A;  5DUL A;  2Y1F A;  4ZW8 A;  3ANN A;  3WQQ A;  5BPP A;  4XN1 A;  3KED A;  1ZS2 A;  2R72 A;  2WPG A;  2QVW A;  1JGI A;  3FUH A;  5JBI A;  3A14 A;  4AR8 A;  2EGH A;  3B7T A;  1MW3 A;  3CIA A;  5JAZ A;  3ANL A;  5HLT A;  4ZW6 A;  4K5N A;  3UEQ A;  2Y1C A;  4FLQ A;  4BKX A;  4ZX4 A;  1ONO A;  4XO3 A;  4XMT A;  3CHP A;  3QJX A;  1OR7 A;  3Q43 A;  2DQM A;  2O7G A;  4ZW5 A;  4R7L A;  4XN9 A;  4A03 A;  1ONP A;  3B34 A;  1SC5 A;  4ZW7 A;  3WQS B;  2MAO A;  4J3B A;  4XN7 A;  5JMW A;  1JG9 A;  3B2X A;  4R5T A;  5EV7 A;  1X3Z A;  3CZE A;  4Y6R A;  2JD1 A;  4Y6P A;  3RC8 A;  4QIR A;  4Y6S A;  4FLS A;  1S46 A;  2FFL A;  5AEN A;  2B61 A;  3CHS A;  4XMV A;  4QHP A;  4MS6 A;  2HPT A;  4ZX6 A;  4PU2 A;  2ZXG A;  4XN2 A;  3FTU A;  4OOE A;  2C5Z A;  3CZK A;  3B37 A;  1SQM A;  1SG7 A;  4K5P A;  2JD0 A;  3JSZ A;  4LUP A;  3PUU A;  4DPR A;  4XNA A;  1T1R A;  1HS6 A;  3FTV A;  4ZN6 A;  4XMX A;  1Q0Q A;  2PL5 A;  3VVM A;  2GTQ A;  4XO5 A;  3EBH A;  2Y1E A;  4XMU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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