The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
22
|
sequence length |
67
|
structure length |
67
|
Chain Sequence |
GSRVKALEEKVKALEEKVKALGGGGRIEELKKKYEELKKKIEELGGGGEVKKVEEEVKKLEEEIKKL
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
De novo protein
|
| molecule keywords |
de novo protein a3Y
|
| publication title |
Photochemical tyrosine oxidation in the structurally well-defined alpha 3Y protein: proton-coupled electron transfer and a long-lived tyrosine radical.
pubmed doi rcsb |
| source organism |
Synthetic construct
|
| total genus |
22
|
| structure length |
67
|
| sequence length |
67
|
| ec nomenclature | |
| pdb deposition date | 2013-12-10 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | Substrate Binding Domain Of Dnak; Chain:A; Domain 2 | Designed single chain three-helix bundle |
#chains in the Genus database with same CATH superfamily 2MI7 A; 1LQ7 A; 2ZXQ A; 2LXY A; #chains in the Genus database with same CATH topology 4AZC B; 4B9Q A; 3RV1 A; 2X3X A; 2D4C A; 3B51 X; 2QKW A; 2EFL A; 4KIK B; 2YL8 A; 3ZED A; 4NQI A; 3QNI A; 5E84 A; 4EZX A; 3ER8 C; 4D8J A; 3EJQ A; 2F1A A; 2LM0 A; 3T4A G; 2F7P A; 2OBM A; 1I4D A; 3BUQ A; 2V0O A; 3BVW A; 3L3O M; 3HAJ A; 4PO2 A; 1DKZ A; 3D2F A; 4H6I A; 3CAZ A; 3O3N B; 1R34 A; 1I49 A; 3CVR A; 3Q0K A; 3BVT A; 2WYI A; 2QFF A; 3T49 A; 1I4T A; 1SU7 A; 4ATM A; 4AZ7 A; 4AKV A; 4EZO A; 1GN9 A; 3Q84 A; 3BVU A; 4JNE A; 3CZN A; 3RPM A; 4WPC A; 4EZY A; 2RAK A; 1TQW A; 2YIB A; 1I4L A; 2RAI A; 2FYV A; 3QWE A; 2F1B A; 3I04 A; 3ERC C; 3B52 X; 4AZI A; 2Q13 A; 3KAV A; 1WDZ A; 5C5B B; 1E1D A; 2ALW A; 2YI9 A; 2YLA A; 3O3O B; 2ND1 A; 1E2U A; 2ND0 A; 4R5G A; 3EJT A; 3T46 A; 1QWU A; 3I01 A; 3VEB A; 3CV5 A; 4AZC A; 2YLL A; 3G9G A; 3BVV A; 4WPE A; 4NPH A; 1SUF A; 2YIV X; 2Z0O A; 4KIK A; 3DPP A; 4R5J A; 4R5K A; 2EFK A; 2JNS A; 3A98 A; 3D50 A; 1QX1 A; 2C08 A; 1JQK A; 2ELB A; 2YL5 A; 3PLT A; 1W9M A; 1O7D C; 1ZYL A; 3RV0 A; 2F7O A; 3DX0 A; 4IW0 A; 1MJG A; 3T47 A; 3ACO A; 3DX3 A; 3EJU A; 3EJP A; 3CZS A; 1O7D B; 4F00 A; 3HAH A; 2Z0V A; 1OAO A; 2NCZ A; 2LXY A; 2OW6 A; 4AZG A; 3DX4 A; 2D1L A; 2GAF D; 1Y2O A; 3QE6 A; 1SU6 A; 3DX1 A; 4IWO A; 1SU8 A; 2EX3 B; 4JN4 A; 3VEA A; 4UDY X; 3GI7 A; 4AZH A; 2Z0N A; 2X3V A; 5FIG A; 4JWC A; 3EJR A; 4DYL A; 3L3P A; 2YL9 A; 5C5B A; 3VKH A; 4EZT A; 1YWM A; 4AZ5 A; 4F01 A; 4H6H A; 4NSW A; 3OK8 A; 3OWG A; 5KBP A; 3KDR A; 3B53 X; 4JWI A; 2EWF A; 3UIT A; 3ER9 B; 4H8S A; 2RAJ A; 2YIA A; 1TQV A; 3BLB A; 4JNF A; 2YL6 A; 3DX2 A; 3QNJ A; 1DKY A; 1GNL A; 3KAW A; 2QXL A; 4HR1 B; 2YI8 A; 2X3W A; 3QA8 A; 2Q12 A; 3LLL A; 2RT6 A; 1OA1 A; 1X03 A; 1TQT A; 2GA9 D; 3I2W A; 3LMF A; 1OA0 A; 4AVM A; 1GNT A; 3HAI A; 3CKD A; 1LQ7 A; 4IM2 A; 2OZN B; 4E3C A; 4EZP A; 4DCN C; 5FLE X; 3D51 A; 3BVX A; 1ZWW A; 4EZW A; 3DPQ A; 3FD9 A; 2X5C A; 3DDG A; 4FZP A; 2F7Q A; 4IM3 A; 3LVT A; 2F18 A; 2OW7 A; 3D4Y A; 1HWW A; 4BNE A; 4FZS A; 4EZU A; 3F7W A; 3SYV A; 1U00 A; 3T48 A; 3OHX M; 3DYT A; 4EZN A; 1UPX A; 4R5L A; 1URU A; 4EZS A; 2Z8Y A; 4EZV A; 2JNK A; 1R33 A; 4EZZ A; 3BUI A; 2MI7 A; 4UDX X; 4HY9 A; 4IM0 A; 3C7N A; 3M3W A; 1R5E A; 4I1Q A; 4EZR A; 2OO2 A; 3DPO A; 4G6Q A; 3D52 A; 2FIC A; 2YKT A; 2WIN M; 4IWQ A; 4JWD A; 5TKY A; 3ABH A; 4AZ6 A; 2ZXQ A; 2N3K A; 2O0I 1; 2PMR A; 4M0M A; 2OBL A; 1DKX A; 4R5I A; 4JWE A; 1E9V A; 1HXK A; 1TQS A; 4EZQ A; 4IWP A; 1TQU A; 4HYB A; 4FZO A; 3EJS A; 3BUB A; 3O3M B; 3SOG A; 2KHO A; 4HR1 A; 3I39 X; 3D4Z A; 4JL9 A; 1X04 A; 4E81 A; 3D2E A; 2WYH A; 1PS3 A; 4AZB A; 2GF4 A; 2F7R A; 3BUD A; 2PY6 A; 3DDF A; 1HTY A; 4JLC A; 1QWN A; 3BUP A; 4FM3 A; #chains in the Genus database with same CATH homology 2MI7 A; 1LQ7 A; 2ZXQ A; 2LXY A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
