2MJMA

The solution nmr structure of the nlrc5 caspase recruitment domain (card)
Total Genus 33
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
101
structure length
101
Chain Sequence
GPLGSMDAESIRLNNENLWAWLVRLLSKNPEWLSAKLRSFLPTMDLDCSYEPSNPEVIHRQLNRLFAQGMATWKSFINDLCFELDVPLDMEIPLVSIWGPR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein, protein binding
molecule keywords Protein NLRC5
publication title Unusual structural features revealed by the solution NMR structure of the NLRC5 caspase recruitment domain.
pubmed doi rcsb
source organism Mus musculus
total genus 33
structure length 101
sequence length 101
ec nomenclature
pdb deposition date 2014-01-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF18461 Atypical_Card Atypical caspase recruitment domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.533.20 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, Fas 2mjmA00
2MJMA
chains in the Genus database with same CATH superfamily
2GF5A 2YU0A 2N00A 2MS7A 1WMGA 2P1HA 1UCPA 2MB9A 4F44A 4IZAB 2NSNA 1CY5A 4N1LA 3T6PA 3MOPK 2DBDA 2N83A 1DDFA 3J6JA 4M9SA 4N1KA 4A2QA 1E41A 4I16A 3LQQA 2A9IA 2YVIA 3CRDA 2N1FA 1WXPA 2NAQA 1YGOA 2DBGA 1PN5A 4DWNA 3YGSC 1ICHA 2OF5H 2A5YB 3CL3A 1FADA 1CWWA 4E9MA 2G7RA 2OF5A 1DGNA 2F1SA 2N80A 2IB1A 2BBZA 2D96A 2YGSA 4JUPA 4IZ5E 2DBFA 2M5VA 4QOBA 3QF2A 4NQKA 1A1ZA 3YGSP 4O7QA 1WH4A 2KM6A 4D8OA 2DO9A 2B1WA 2HM2Q 4F42A 4EWIA 4A2WA 1C15A 2N7ZA 2LS7A 2VGQA 4ZBWA 1A1WA 2N97A 1N3KA 2L9MA 2XV9A 3J63A 2LWEA 4IZ7B 4LWDA 2LWDA 2O71A 1E3YA 3EZQA 2BBRA 3MOPA 4O6XA 4P4HA 3KATA 2MN4A 1Z6TA 2DBHA 4P4HI 1D2ZB 4RHWE 2MPCA 4JQWA 1NGRA 4RHWA 4FH0A 4N1JA 4O9FA 4M9XA 2MS8A 3EZQB 2KN6A 2NZ7A 2L6AA 1D2ZA 2MJMA 4M9ZA 4O9LA 2YQFA 3MOPG 4UZ0A 3LQRA
chains in the Genus database with same CATH topology
2GF5A 2YU0A 2N00A 2MS7A 1WMGA 2P1HA 1UCPA 2MB9A 4F44A 4IZAB 2NSNA 1CY5A 4N1LA 3T6PA 3MOPK 2DBDA 2N83A 1DDFA 3J6JA 4M9SA 4N1KA 4A2QA 1E41A 4I16A 3LQQA 2A9IA 2YVIA 3CRDA 2N1FA 1WXPA 2NAQA 1YGOA 2DBGA 1PN5A 4DWNA 3YGSC 1ICHA 2OF5H 2A5YB 3CL3A 1FADA 1CWWA 4E9MA 2G7RA 2OF5A 1DGNA 2F1SA 2N80A 2IB1A 2BBZA 2D96A 2YGSA 4JUPA 4IZ5E 2DBFA 2M5VA 4QOBA 3QF2A 4NQKA 1A1ZA 3YGSP 4O7QA 1WH4A 2KM6A 4D8OA 2DO9A 2B1WA 2HM2Q 4F42A 4EWIA 4A2WA 1C15A 2N7ZA 2LS7A 2VGQA 4ZBWA 1A1WA 2N97A 1N3KA 2L9MA 2XV9A 3J63A 2LWEA 4IZ7B 4LWDA 2LWDA 2O71A 1E3YA 3EZQA 2BBRA 3MOPA 4O6XA 4P4HA 3KATA 2MN4A 1Z6TA 2DBHA 4P4HI 1D2ZB 4RHWE 2MPCA 4JQWA 1NGRA 4RHWA 4FH0A 4N1JA 4O9FA 4M9XA 2MS8A 3EZQB 2KN6A 2NZ7A 2L6AA 1D2ZA 2MJMA 4M9ZA 4O9LA 2YQFA 3MOPG 4UZ0A 3LQRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2MJM A; 
#chains in the Genus database with same CATH topology
 2GF5 A;  2YU0 A;  2N00 A;  2MS7 A;  1WMG A;  2P1H A;  1UCP A;  2MB9 A;  4F44 A;  4IZA B;  2NSN A;  1CY5 A;  4N1L A;  3T6P A;  3MOP K;  2DBD A;  2N83 A;  1DDF A;  3J6J A;  4M9S A;  4N1K A;  4A2Q A;  1E41 A;  4I16 A;  3LQQ A;  2A9I A;  2YVI A;  3CRD A;  2N1F A;  1WXP A;  2NAQ A;  1YGO A;  2DBG A;  1PN5 A;  4DWN A;  3YGS C;  1ICH A;  2OF5 H;  2A5Y B;  3CL3 A;  1FAD A;  1CWW A;  4E9M A;  2G7R A;  2OF5 A;  1DGN A;  2F1S A;  2N80 A;  2IB1 A;  2BBZ A;  2D96 A;  2YGS A;  4JUP A;  4IZ5 E;  2DBF A;  2M5V A;  4QOB A;  3QF2 A;  4NQK A;  1A1Z A;  3YGS P;  4O7Q A;  1WH4 A;  2KM6 A;  4D8O A;  2DO9 A;  2B1W A;  2HM2 Q;  4F42 A;  4EWI A;  4A2W A;  1C15 A;  2N7Z A;  2LS7 A;  2VGQ A;  4ZBW A;  1A1W A;  2N97 A;  1N3K A;  2L9M A;  2XV9 A;  3J63 A;  2LWE A;  4IZ7 B;  4LWD A;  2LWD A;  2O71 A;  1E3Y A;  3EZQ A;  2BBR A;  3MOP A;  4O6X A;  4P4H A;  3KAT A;  2MN4 A;  1Z6T A;  2DBH A;  4P4H I;  1D2Z B;  4RHW E;  2MPC A;  4JQW A;  1NGR A;  4RHW A;  4FH0 A;  4N1J A;  4O9F A;  4M9X A;  2MS8 A;  3EZQ B;  2KN6 A;  2NZ7 A;  2L6A A;  1D2Z A;  2MJM A;  4M9Z A;  4O9L A;  2YQF A;  3MOP G;  4UZ0 A;  3LQR A; 
#chains in the Genus database with same CATH homology
 2GF5 A;  2YU0 A;  2N00 A;  2MS7 A;  1WMG A;  2P1H A;  1UCP A;  2MB9 A;  4F44 A;  4IZA B;  2NSN A;  1CY5 A;  4N1L A;  3T6P A;  3MOP K;  2DBD A;  2N83 A;  1DDF A;  3J6J A;  4M9S A;  4N1K A;  4A2Q A;  1E41 A;  4I16 A;  3LQQ A;  2A9I A;  2YVI A;  3CRD A;  2N1F A;  1WXP A;  2NAQ A;  1YGO A;  2DBG A;  1PN5 A;  4DWN A;  3YGS C;  1ICH A;  2OF5 H;  2A5Y B;  3CL3 A;  1FAD A;  1CWW A;  4E9M A;  2G7R A;  2OF5 A;  1DGN A;  2F1S A;  2N80 A;  2IB1 A;  2BBZ A;  2D96 A;  2YGS A;  4JUP A;  4IZ5 E;  2DBF A;  2M5V A;  4QOB A;  3QF2 A;  4NQK A;  1A1Z A;  3YGS P;  4O7Q A;  1WH4 A;  2KM6 A;  4D8O A;  2DO9 A;  2B1W A;  2HM2 Q;  4F42 A;  4EWI A;  4A2W A;  1C15 A;  2N7Z A;  2LS7 A;  2VGQ A;  4ZBW A;  1A1W A;  2N97 A;  1N3K A;  2L9M A;  2XV9 A;  3J63 A;  2LWE A;  4IZ7 B;  4LWD A;  2LWD A;  2O71 A;  1E3Y A;  3EZQ A;  2BBR A;  3MOP A;  4O6X A;  4P4H A;  3KAT A;  2MN4 A;  1Z6T A;  2DBH A;  4P4H I;  1D2Z B;  4RHW E;  2MPC A;  4JQW A;  1NGR A;  4RHW A;  4FH0 A;  4N1J A;  4O9F A;  4M9X A;  2MS8 A;  3EZQ B;  2KN6 A;  2NZ7 A;  2L6A A;  1D2Z A;  2MJM A;  4M9Z A;  4O9L A;  2YQF A;  3MOP G;  4UZ0 A;  3LQR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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