2MMAB

Nmr-based docking model of grxs14-bola2 apo-heterodimer from arabidopsis thaliana
Total Genus 22
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
80
structure length
80
Chain Sequence
VTKEQVEASLTSKLKPIHLEVIDISGGCGSSFEVEVVSEQFEGKRLLERHRMVNAALEEEMKEIHALSIKKAQTPQQWKP
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Gene regulation
molecule keywords Monothiol glutaredoxin-S14, chloroplastic
publication title Structural and Spectroscopic Insights into BolA-Glutaredoxin Complexes.
pubmed doi rcsb
source organism Arabidopsis thaliana
total genus 22
structure length 80
sequence length 80
ec nomenclature
pdb deposition date 2014-03-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF01722 BolA BolA-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.300.90 Alpha Beta 2-Layer Sandwich GMP Synthetase; Chain A, domain 3 BolA-like 2mmaB00
1XS3A 4PUIA 5LCIA 4PUGA 2MCQA 1NY8A 2KZ0A 2MMAB 2NCLA 3O2EA 1V60A 3TR3A 2DHMA 2MM9A 4PUHA 2KDNA
chains in the Genus database with same CATH superfamily
2BH1X 4L2ZA 3RV2A 4DR1C 4DR4C 5FLXD 5BUSA 1P4EA 5K85A 2P2FA 1BA3A 5GTDA 3LUSA 2P20A 1HH2P 5AE1A 2KZ0A 1YJ7A 2NCLA 2HHHC 1VLAA 4NOZA 5BSMA 3A4IA 4BSZA 1WCJA 1UKKA 1HNZC 3GKUA 2ZM6C 2OPLB 2OBVA 5LMUC 1V26A 2UXCC 1IBLC 4LFBC 2PROA 2VSQA 4BC9A 4B3MC 1IBKC 4ZJZA 4RLFA 3N2QA 1FUGA 2YWCA 4PUIA 1N36C 4DCTA 1T5HX 3UX2A 5BR8C 4DCVA 2PN2A 4R1LA 5BSRA 3G7SA 2WD9A 3CW8X 3LGXA 1QM4A 4OX9C 4IZ6A 1MXAA 2E8EA 2E0GA 2EGTA 3RG2A 4YY3C 1NYEA 4KTVA 1I94C 2CXCA 4NDNA 2E7GA 4NXMC 1JOSA 1MKYA 2UUBC 1GPMA 4LFCC 2UXBC 5ADZA 5T8SA 4JI6C 2KZFA 3S82A 4B3RC 2D28C 4RVNA 1LCIA 2D1SA 3NI2A 3VNRA 4DV2C 4JI3C 4FUQA 3EQ6A 4XX2A 4DV3C 2WP0C 3E7WA 1AMUA 4YHHC 1MXBA 4LFAC 3VNQA 4JV5C 3TDEA 1VEHA 1ZB9A 3GPCA 4PUGA 1N32C 4I9FA 1J5EC 3FCCA 1PU1A 1WH9A 3UX3A 3E7XA 4PUHA 5E7QA 3H2TA 3TQIA 3CQ2A 3IEUA 3DLPX 4LE5A 4JI7C 4DCUA 1IB8A 3UOWA 4GKJC 3AY0A 4DV1C 4RLQA 2D27A 2JNVA 2Y4OA 2VQFC 3ETCA 1HR0C 2OPLA 2D1RA 5LCIA 1O92A 1XRCA 3NPDA 4OXIA 2M5OA 4D4IA 1HNXC 4B3SC 2ATWA 1XRBA 4D4GA 4KHPC 4L4QA 2P2BA 3TUFA 3J80D 5AE3A 5A1IA 1O9TA 4JI2C 5T8TA 4GKKC 3A25A 4PROC 4X64C 3I07A 3GR1A 4RMNA 2CU6A 4K0KC 4D57A 3CQ1A 3AF5A 3VNSA 3IMLA 4MH4A 4LF7C 4BCAA 3DHVA 5BSVA 1V60A 1KKGA 1LQLA 2QVYX 3PESA 3A26A 4DG8A 4LF9C 1P7LA 4RM2A 2Y4NA 3T1YC 3NYQA 2BJOA 2QW0X 2DHMA 2DYJA 3A9UA 4JI5C 4LF5C 3C5EA 4NXNC 5KYTA 2QL8A 4FUTA 1M6XC 5IT9D 1QWIA 2QVZX 2D1TA 2VQEC 3LAXA 3KXWA 4DUYC 4JI4C 4ISBA 3K6RA 3CJEA 1N34C 4ZLPA 3CW9A 5K8FA 4X62C 1RG9A 4L7IA 1XMQC 4LF6C 4BC7A 1M6XA 5JRHA 1RY2A 2PT7G 2E5LC 5LMNC 3JAMD 1XHJA 3IPLA 1O90A 5IWAC 2DPLA 5BSUA 2CY1A 3I08A 1NY8A 2ASBA 4WV3A 2Y27A 1L2FA 2YWBA 1ML8A 3T1HC 2ZZMA 1EGAA 4DR6C 3CQ3A 3NYRA 1PG3A 4IR7A 4X65C 4WS9A 3ETOA 2P2MA 1WF3A 4JYAC 4DCSA 1FJGC 3B7WA 4JM1A 3IEVA 2HJGA 2ZZNA 3L8CA 3SO4A 4U5YD 4PHTA 2UU9C 3R9WA 1PA4A 4TPSB 3UEBA 3PBKA 3LNOA 4LF4C 4JI1C 4DG9A 2QVXX 2KDNA 4DR7C 4X66C 5KEIA 2YCBA 2Z51A 2MCQA 2E8CA 2M5HA 4I9GA 5H9UA 4DV0C 2P2JA 2P02A 4GS5A 4DUZC 4BBYA 4FTFA 2MM9A 1XNQC 4EATA 1MXCA 3FCEA 1K0RA 1MDBA 1XNRC 1UWDA 2XR1A 4G37A 4R0MA 1FLOA 1N2FA 3O2EA 3N54B 5BUQA 1N33C 2UUAC 5A2QD 5CZXA 2P2QA 4DV4C 3LNVA 5BSWA 1V25A 4GXQA 4DR3C 5IFIA 4RVOA 5BURA 1ULTA 2YX1A 2ONFA 1T5DX 4AQYC 2D7VA 4KTTA 4D56A 5AE2A 4G36A 2OO4A 3TR3A 2VZEA 1USPA 1PG4A 4B3TC 5CZVA 3UZ0A 5KYVA 3A9VA 3GR0A 1MDFA 4DR2C 3DAYA 3R9XA 3EERA 4G1IA 4LF8C 2D1QA 2UXDC 1USPB 4OYCA 2AYAA 1IBMC 4JI0C 4PZPA 2JMPA 5BSTA 4ODJA 1TH5A 2UUCC 4DV5C 1O93A 4JI8C 5A1GA 1ZB8A 1XS3A 3OTOC 1HNWC 5A19A 4DV6C 4HPVA 4RM3A 1MD9A 2F4VC 3AF6A 2MMAB 3PROC 1XRAA 4GXRA 4MTNA 3R44A 4DR5C 4K0BA 1P4EC 4DV7C 4R1MA 5DV9A 1XMOC 3J81D 2V7BA 3L95X 2E8FA
chains in the Genus database with same CATH topology
1XS3A 4PUIA 5LCIA 4PUGA 2MCQA 1NY8A 2KZ0A 2MMAB 2NCLA 3O2EA 1V60A 3TR3A 2DHMA 2MM9A 4PUHA 2KDNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1XS3 A;  4PUI A;  5LCI A;  4PUG A;  2MCQ A;  1NY8 A;  2KZ0 A;  2MMA B;  2NCL A;  3O2E A;  1V60 A;  3TR3 A;  2DHM A;  2MM9 A;  4PUH A;  2KDN A; 
#chains in the Genus database with same CATH topology
 2BH1 X;  4L2Z A;  3RV2 A;  4DR1 C;  4DR4 C;  5FLX D;  5BUS A;  1P4E A;  5K85 A;  2P2F A;  1BA3 A;  5GTD A;  3LUS A;  2P20 A;  1HH2 P;  5AE1 A;  2KZ0 A;  1YJ7 A;  2NCL A;  2HHH C;  1VLA A;  4NOZ A;  5BSM A;  3A4I A;  4BSZ A;  1WCJ A;  1UKK A;  1HNZ C;  3GKU A;  2ZM6 C;  2OPL B;  2OBV A;  5LMU C;  1V26 A;  2UXC C;  1IBL C;  4LFB C;  2PRO A;  2VSQ A;  4BC9 A;  4B3M C;  1IBK C;  4ZJZ A;  4RLF A;  3N2Q A;  1FUG A;  2YWC A;  4PUI A;  1N36 C;  4DCT A;  1T5H X;  3UX2 A;  5BR8 C;  4DCV A;  2PN2 A;  4R1L A;  5BSR A;  3G7S A;  2WD9 A;  3CW8 X;  3LGX A;  1QM4 A;  4OX9 C;  4IZ6 A;  1MXA A;  2E8E A;  2E0G A;  2EGT A;  3RG2 A;  4YY3 C;  1NYE A;  4KTV A;  1I94 C;  2CXC A;  4NDN A;  2E7G A;  4NXM C;  1JOS A;  1MKY A;  2UUB C;  1GPM A;  4LFC C;  2UXB C;  5ADZ A;  5T8S A;  4JI6 C;  2KZF A;  3S82 A;  4B3R C;  2D28 C;  4RVN A;  1LCI A;  2D1S A;  3NI2 A;  3VNR A;  4DV2 C;  4JI3 C;  4FUQ A;  3EQ6 A;  4XX2 A;  4DV3 C;  2WP0 C;  3E7W A;  1AMU A;  4YHH C;  1MXB A;  4LFA C;  3VNQ A;  4JV5 C;  3TDE A;  1VEH A;  1ZB9 A;  3GPC A;  4PUG A;  1N32 C;  4I9F A;  1J5E C;  3FCC A;  1PU1 A;  1WH9 A;  3UX3 A;  3E7X A;  4PUH A;  5E7Q A;  3H2T A;  3TQI A;  3CQ2 A;  3IEU A;  3DLP X;  4LE5 A;  4JI7 C;  4DCU A;  1IB8 A;  3UOW A;  4GKJ C;  3AY0 A;  4DV1 C;  4RLQ A;  2D27 A;  2JNV A;  2Y4O A;  2VQF C;  3ETC A;  1HR0 C;  2OPL A;  2D1R A;  5LCI A;  1O92 A;  1XRC A;  3NPD A;  4OXI A;  2M5O A;  4D4I A;  1HNX C;  4B3S C;  2ATW A;  1XRB A;  4D4G A;  4KHP C;  4L4Q A;  2P2B A;  3TUF A;  3J80 D;  5AE3 A;  5A1I A;  1O9T A;  4JI2 C;  5T8T A;  4GKK C;  3A25 A;  4PRO C;  4X64 C;  3I07 A;  3GR1 A;  4RMN A;  2CU6 A;  4K0K C;  4D57 A;  3CQ1 A;  3AF5 A;  3VNS A;  3IML A;  4MH4 A;  4LF7 C;  4BCA A;  3DHV A;  5BSV A;  1V60 A;  1KKG A;  1LQL A;  2QVY X;  3PES A;  3A26 A;  4DG8 A;  4LF9 C;  1P7L A;  4RM2 A;  2Y4N A;  3T1Y C;  3NYQ A;  2BJO A;  2QW0 X;  2DHM A;  2DYJ A;  3A9U A;  4JI5 C;  4LF5 C;  3C5E A;  4NXN C;  5KYT A;  2QL8 A;  4FUT A;  1M6X C;  5IT9 D;  1QWI A;  2QVZ X;  2D1T A;  2VQE C;  3LAX A;  3KXW A;  4DUY C;  4JI4 C;  4ISB A;  3K6R A;  3CJE A;  1N34 C;  4ZLP A;  3CW9 A;  5K8F A;  4X62 C;  1RG9 A;  4L7I A;  1XMQ C;  4LF6 C;  4BC7 A;  1M6X A;  5JRH A;  1RY2 A;  2PT7 G;  2E5L C;  5LMN C;  3JAM D;  1XHJ A;  3IPL A;  1O90 A;  5IWA C;  2DPL A;  5BSU A;  2CY1 A;  3I08 A;  1NY8 A;  2ASB A;  4WV3 A;  2Y27 A;  1L2F A;  2YWB A;  1ML8 A;  3T1H C;  2ZZM A;  1EGA A;  4DR6 C;  3CQ3 A;  3NYR A;  1PG3 A;  4IR7 A;  4X65 C;  4WS9 A;  3ETO A;  2P2M A;  1WF3 A;  4JYA C;  4DCS A;  1FJG C;  3B7W A;  4JM1 A;  3IEV A;  2HJG A;  2ZZN A;  3L8C A;  3SO4 A;  4U5Y D;  4PHT A;  2UU9 C;  3R9W A;  1PA4 A;  4TPS B;  3UEB A;  3PBK A;  3LNO A;  4LF4 C;  4JI1 C;  4DG9 A;  2QVX X;  2KDN A;  4DR7 C;  4X66 C;  5KEI A;  2YCB A;  2Z51 A;  2MCQ A;  2E8C A;  2M5H A;  4I9G A;  5H9U A;  4DV0 C;  2P2J A;  2P02 A;  4GS5 A;  4DUZ C;  4BBY A;  4FTF A;  2MM9 A;  1XNQ C;  4EAT A;  1MXC A;  3FCE A;  1K0R A;  1MDB A;  1XNR C;  1UWD A;  2XR1 A;  4G37 A;  4R0M A;  1FLO A;  1N2F A;  3O2E A;  3N54 B;  5BUQ A;  1N33 C;  2UUA C;  5A2Q D;  5CZX A;  2P2Q A;  4DV4 C;  3LNV A;  5BSW A;  1V25 A;  4GXQ A;  4DR3 C;  5IFI A;  4RVO A;  5BUR A;  1ULT A;  2YX1 A;  2ONF A;  1T5D X;  4AQY C;  2D7V A;  4KTT A;  4D56 A;  5AE2 A;  4G36 A;  2OO4 A;  3TR3 A;  2VZE A;  1USP A;  1PG4 A;  4B3T C;  5CZV A;  3UZ0 A;  5KYV A;  3A9V A;  3GR0 A;  1MDF A;  4DR2 C;  3DAY A;  3R9X A;  3EER A;  4G1I A;  4LF8 C;  2D1Q A;  2UXD C;  1USP B;  4OYC A;  2AYA A;  1IBM C;  4JI0 C;  4PZP A;  2JMP A;  5BST A;  4ODJ A;  1TH5 A;  2UUC C;  4DV5 C;  1O93 A;  4JI8 C;  5A1G A;  1ZB8 A;  1XS3 A;  3OTO C;  1HNW C;  5A19 A;  4DV6 C;  4HPV A;  4RM3 A;  1MD9 A;  2F4V C;  3AF6 A;  2MMA B;  3PRO C;  1XRA A;  4GXR A;  4MTN A;  3R44 A;  4DR5 C;  4K0B A;  1P4E C;  4DV7 C;  4R1M A;  5DV9 A;  1XMO C;  3J81 D;  2V7B A;  3L95 X;  2E8F A; 
#chains in the Genus database with same CATH homology
 1XS3 A;  4PUI A;  5LCI A;  4PUG A;  2MCQ A;  1NY8 A;  2KZ0 A;  2MMA B;  2NCL A;  3O2E A;  1V60 A;  3TR3 A;  2DHM A;  2MM9 A;  4PUH A;  2KDN A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...