2MS8A

Solution nmr structure of mavs card
Total Genus 33
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
102
structure length
102
Chain Sequence
GSMPFAEDKTYKYICRNFSNFCNVDVVEILPYLPCLTARDQDRLRATCTLSGNRDTLWHLFNTLQRRPGWVEYFIAALRGCELVDLADEVASVYQSYQPRTS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
molecule keywords Mitochondrial antiviral-signaling protein
publication title Structure determination of helical filaments by solid-state NMR spectroscopy.
pubmed doi rcsb
source organism Homo sapiens
total genus 33
structure length 102
sequence length 102
ec nomenclature
pdb deposition date 2014-07-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16739 CARD_2 Caspase recruitment domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, Fas 2ms8A00
2BBZA 4E9MA 4P4HA 4P4HI 2DBHA 4A2WA 1E3YA 2LWDA 4O9LA 1CWWA 3QF2A 2NAQA 1FADA 4N1JA 1DGNA 3CL3A 4M9XA 4DWNA 1WXPA 2YU0A 2NZ7A 2G7RA 4QOBA 2KM6A 2MB9A 2YQFA 4M9ZA 4O9FA 4IZ5E 2MPCA 4F44A 2VGQA 4IZAB 3J6JA 2DBFA 2O71A 2L6AA 3MOPK 2LWEA 4NQKA 4EWIA 1E41A 2OF5H 2DBGA 2MS8A 4RHWE 4JUPA 1ICHA 1YGOA 2P1HA 3LQRA 4F42A 3LQQA 2YVIA 4O7QA 4LWDA 2MS7A 2OF5A 2NSNA 1WMGA 2GF5A 2N1FA 4M9SA 4JQWA 2HM2Q 2N97A 3MOPG 2KN6A 4UZ0A 2D96A 3J63A 2YGSA 1CY5A 2IB1A 3EZQB 3YGSP 4ZBWA 2LS7A 2N83A 1WH4A 3T6PA 2F1SA 2L9MA 3MOPA 2B1WA 2MN4A 4RHWA 1D2ZB 4FH0A 2A5YB 4N1LA 1A1WA 4D8OA 2N80A 4O6XA 4I16A 2M5VA 1N3KA 4IZ7B 3YGSC 3CRDA 1A1ZA 4A2QA 2DBDA 1NGRA 3EZQA 2N7ZA 1DDFA 1UCPA 2BBRA 4N1KA 1Z6TA 2DO9A 1D2ZA 1PN5A 1C15A 3KATA 2A9IA 2N00A
chains in the Genus database with same CATH superfamily
2BBZA 4E9MA 4P4HA 4P4HI 2DBHA 4A2WA 1E3YA 2LWDA 4O9LA 1CWWA 3QF2A 2NAQA 1FADA 4N1JA 1DGNA 2MJMA 3CL3A 4M9XA 4DWNA 1WXPA 2YU0A 2NZ7A 2G7RA 4QOBA 2KM6A 2MB9A 2YQFA 4M9ZA 4O9FA 4IZ5E 2MPCA 4F44A 2VGQA 4IZAB 3J6JA 2DBFA 2O71A 2L6AA 3MOPK 2LWEA 4NQKA 4EWIA 1E41A 2OF5H 2DBGA 2MS8A 4RHWE 4JUPA 1ICHA 1YGOA 2P1HA 3LQRA 4F42A 3LQQA 2YVIA 4O7QA 4LWDA 2MS7A 2OF5A 2NSNA 1WMGA 2GF5A 2N1FA 4M9SA 4JQWA 2HM2Q 2N97A 3MOPG 2KN6A 4UZ0A 2D96A 3J63A 2YGSA 1CY5A 2IB1A 3EZQB 3YGSP 4ZBWA 2LS7A 2N83A 1WH4A 3T6PA 2F1SA 2L9MA 3MOPA 2B1WA 2MN4A 4RHWA 1D2ZB 4FH0A 2A5YB 4N1LA 1A1WA 4D8OA 2N80A 4O6XA 4I16A 2M5VA 1N3KA 4IZ7B 3YGSC 3CRDA 2XV9A 1A1ZA 4A2QA 2DBDA 1NGRA 3EZQA 2N7ZA 1DDFA 1UCPA 2BBRA 4N1KA 1Z6TA 2DO9A 1D2ZA 1PN5A 1C15A 3KATA 2A9IA 2N00A
chains in the Genus database with same CATH topology
2BBZA 4E9MA 4P4HA 4P4HI 2DBHA 4A2WA 1E3YA 2LWDA 4O9LA 1CWWA 3QF2A 2NAQA 1FADA 4N1JA 1DGNA 2MJMA 3CL3A 4M9XA 4DWNA 1WXPA 2YU0A 2NZ7A 2G7RA 4QOBA 2KM6A 2MB9A 2YQFA 4M9ZA 4O9FA 4IZ5E 2MPCA 4F44A 2VGQA 4IZAB 3J6JA 2DBFA 2O71A 2L6AA 3MOPK 2LWEA 4NQKA 4EWIA 1E41A 2OF5H 2DBGA 2MS8A 4RHWE 4JUPA 1ICHA 1YGOA 2P1HA 3LQRA 4F42A 3LQQA 2YVIA 4O7QA 4LWDA 2MS7A 2OF5A 2NSNA 1WMGA 2GF5A 2N1FA 4M9SA 4JQWA 2HM2Q 2N97A 3MOPG 2KN6A 4UZ0A 2D96A 3J63A 2YGSA 1CY5A 2IB1A 3EZQB 3YGSP 4ZBWA 2LS7A 2N83A 1WH4A 3T6PA 2F1SA 2L9MA 3MOPA 2B1WA 2MN4A 4RHWA 1D2ZB 4FH0A 2A5YB 4N1LA 1A1WA 4D8OA 2N80A 4O6XA 4I16A 2M5VA 1N3KA 4IZ7B 3YGSC 3CRDA 2XV9A 1A1ZA 4A2QA 2DBDA 1NGRA 3EZQA 2N7ZA 1DDFA 1UCPA 2BBRA 4N1KA 1Z6TA 2DO9A 1D2ZA 1PN5A 1C15A 3KATA 2A9IA 2N00A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BBZ A;  4E9M A;  4P4H A;  4P4H I;  2DBH A;  4A2W A;  1E3Y A;  2LWD A;  4O9L A;  1CWW A;  3QF2 A;  2NAQ A;  1FAD A;  4N1J A;  1DGN A;  3CL3 A;  4M9X A;  4DWN A;  1WXP A;  2YU0 A;  2NZ7 A;  2G7R A;  4QOB A;  2KM6 A;  2MB9 A;  2YQF A;  4M9Z A;  4O9F A;  4IZ5 E;  2MPC A;  4F44 A;  2VGQ A;  4IZA B;  3J6J A;  2DBF A;  2O71 A;  2L6A A;  3MOP K;  2LWE A;  4NQK A;  4EWI A;  1E41 A;  2OF5 H;  2DBG A;  2MS8 A;  4RHW E;  4JUP A;  1ICH A;  1YGO A;  2P1H A;  3LQR A;  4F42 A;  3LQQ A;  2YVI A;  4O7Q A;  4LWD A;  2MS7 A;  2OF5 A;  2NSN A;  1WMG A;  2GF5 A;  2N1F A;  4M9S A;  4JQW A;  2HM2 Q;  2N97 A;  3MOP G;  2KN6 A;  4UZ0 A;  2D96 A;  3J63 A;  2YGS A;  1CY5 A;  2IB1 A;  3EZQ B;  3YGS P;  4ZBW A;  2LS7 A;  2N83 A;  1WH4 A;  3T6P A;  2F1S A;  2L9M A;  3MOP A;  2B1W A;  2MN4 A;  4RHW A;  1D2Z B;  4FH0 A;  2A5Y B;  4N1L A;  1A1W A;  4D8O A;  2N80 A;  4O6X A;  4I16 A;  2M5V A;  1N3K A;  4IZ7 B;  3YGS C;  3CRD A;  1A1Z A;  4A2Q A;  2DBD A;  1NGR A;  3EZQ A;  2N7Z A;  1DDF A;  1UCP A;  2BBR A;  4N1K A;  1Z6T A;  2DO9 A;  1D2Z A;  1PN5 A;  1C15 A;  3KAT A;  2A9I A;  2N00 A; 
#chains in the Genus database with same CATH topology
 2BBZ A;  4E9M A;  4P4H A;  4P4H I;  2DBH A;  4A2W A;  1E3Y A;  2LWD A;  4O9L A;  1CWW A;  3QF2 A;  2NAQ A;  1FAD A;  4N1J A;  1DGN A;  2MJM A;  3CL3 A;  4M9X A;  4DWN A;  1WXP A;  2YU0 A;  2NZ7 A;  2G7R A;  4QOB A;  2KM6 A;  2MB9 A;  2YQF A;  4M9Z A;  4O9F A;  4IZ5 E;  2MPC A;  4F44 A;  2VGQ A;  4IZA B;  3J6J A;  2DBF A;  2O71 A;  2L6A A;  3MOP K;  2LWE A;  4NQK A;  4EWI A;  1E41 A;  2OF5 H;  2DBG A;  2MS8 A;  4RHW E;  4JUP A;  1ICH A;  1YGO A;  2P1H A;  3LQR A;  4F42 A;  3LQQ A;  2YVI A;  4O7Q A;  4LWD A;  2MS7 A;  2OF5 A;  2NSN A;  1WMG A;  2GF5 A;  2N1F A;  4M9S A;  4JQW A;  2HM2 Q;  2N97 A;  3MOP G;  2KN6 A;  4UZ0 A;  2D96 A;  3J63 A;  2YGS A;  1CY5 A;  2IB1 A;  3EZQ B;  3YGS P;  4ZBW A;  2LS7 A;  2N83 A;  1WH4 A;  3T6P A;  2F1S A;  2L9M A;  3MOP A;  2B1W A;  2MN4 A;  4RHW A;  1D2Z B;  4FH0 A;  2A5Y B;  4N1L A;  1A1W A;  4D8O A;  2N80 A;  4O6X A;  4I16 A;  2M5V A;  1N3K A;  4IZ7 B;  3YGS C;  3CRD A;  2XV9 A;  1A1Z A;  4A2Q A;  2DBD A;  1NGR A;  3EZQ A;  2N7Z A;  1DDF A;  1UCP A;  2BBR A;  4N1K A;  1Z6T A;  2DO9 A;  1D2Z A;  1PN5 A;  1C15 A;  3KAT A;  2A9I A;  2N00 A; 
#chains in the Genus database with same CATH homology
 2BBZ A;  4E9M A;  4P4H A;  4P4H I;  2DBH A;  4A2W A;  1E3Y A;  2LWD A;  4O9L A;  1CWW A;  3QF2 A;  2NAQ A;  1FAD A;  4N1J A;  1DGN A;  2MJM A;  3CL3 A;  4M9X A;  4DWN A;  1WXP A;  2YU0 A;  2NZ7 A;  2G7R A;  4QOB A;  2KM6 A;  2MB9 A;  2YQF A;  4M9Z A;  4O9F A;  4IZ5 E;  2MPC A;  4F44 A;  2VGQ A;  4IZA B;  3J6J A;  2DBF A;  2O71 A;  2L6A A;  3MOP K;  2LWE A;  4NQK A;  4EWI A;  1E41 A;  2OF5 H;  2DBG A;  2MS8 A;  4RHW E;  4JUP A;  1ICH A;  1YGO A;  2P1H A;  3LQR A;  4F42 A;  3LQQ A;  2YVI A;  4O7Q A;  4LWD A;  2MS7 A;  2OF5 A;  2NSN A;  1WMG A;  2GF5 A;  2N1F A;  4M9S A;  4JQW A;  2HM2 Q;  2N97 A;  3MOP G;  2KN6 A;  4UZ0 A;  2D96 A;  3J63 A;  2YGS A;  1CY5 A;  2IB1 A;  3EZQ B;  3YGS P;  4ZBW A;  2LS7 A;  2N83 A;  1WH4 A;  3T6P A;  2F1S A;  2L9M A;  3MOP A;  2B1W A;  2MN4 A;  4RHW A;  1D2Z B;  4FH0 A;  2A5Y B;  4N1L A;  1A1W A;  4D8O A;  2N80 A;  4O6X A;  4I16 A;  2M5V A;  1N3K A;  4IZ7 B;  3YGS C;  3CRD A;  2XV9 A;  1A1Z A;  4A2Q A;  2DBD A;  1NGR A;  3EZQ A;  2N7Z A;  1DDF A;  1UCP A;  2BBR A;  4N1K A;  1Z6T A;  2DO9 A;  1D2Z A;  1PN5 A;  1C15 A;  3KAT A;  2A9I A;  2N00 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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