2ND0A

Solution nmr structures of brd4 et domain with lana peptide
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
83
structure length
83
Chain Sequence
SEEEDKCKPMSYEEKRQLSLDINKLPGEKLGRVVHIIQSREPSLKNSNPDEIEIDFETLKPSTLRELERYVTSCLRKKRKPQA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription/viral protein
molecule keywords Bromodomain-containing protein 4
publication title Structural Mechanism of Transcriptional Regulator NSD3 Recognition by the ET Domain of BRD4.
pubmed doi rcsb
source organism Homo sapiens
total genus 27
structure length 83
sequence length 83
ec nomenclature
pdb deposition date 2016-04-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF17035 BET Bromodomain extra-terminal - transcription regulation
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.220 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Substrate Binding Domain Of Dnak; Chain:A; Domain 2 2nd0A01
2ND1A 2N3KA 2NCZA 2JNSA 2ND0A
chains in the Genus database with same CATH superfamily
4G6QA 4JWIA 1QWUA 2OZNB 1OA1A 3DX2A 3QE6A 2PMRA 2MI7A 2YI8A 4R5KA 3CV5A 4F01A 2F7RA 4FZSA 4EZUA 3QNJA 3B53X 4WPCA 3FD9A 4F00A 3DPPA 4H8SA 4AZBA 2FICA 3EJTA 5C5BB 2Z0NA 1WDZA 3GI7A 2ND1A 4IWQA 2WINM 4ATMA 2F7OA 1TQVA 1TQTA 2F7PA 1O7DB 3C7NA 3EJRA 4R5LA 2X5CA 2YLAA 1YWMA 3KDRA 3BVUA 1X03A 3QNIA 3ERCC 4IWPA 2ELBA 1DKYA 2OBLA 3L3OM 1W9MA 1SU6A 3L3PA 4JWCA 3DDFA 5FLEX 4AZ5A 2RAJA 3HAJA 4KIKA 3BLBA 4UDYX 1GN9A 2YL8A 1X04A 3VEBA 4NPHA 3CKDA 3D51A 4EZQA 3BVWA 1U00A 3BVXA 4M0MA 2JNKA 1GNLA 3I04A 5C5BA 2NCZA 1QWNA 3DX0A 1LQ7A 3I2WA 4AZHA 4IM3A 4JWDA 3D4YA 3DX1A 4D8JA 1R33A 3BUIA 4DCNC 2ND0A 4H6HA 2YIVX 3F7WA 2OW6A 1HXKA 1E1DA 3G9GA 3QA8A 2F1AA 2Q13A 2ZXQA 4FZOA 4PO2A 4H6IA 2F18A 3DYTA 5E84A 2LXYA 2QFFA 4EZTA 3D2EA 2YL6A 4JNEA 4JL9A 4I1QA 4IM0A 4EZOA 2GAFD 4EZPA 4EZZA 2F7QA 4R5IA 2OO2A 3O3MB 2YKTA 3VEAA 1OA0A 1DKZA 2V0OA 2QXLA 4AKVA 3I39X 1E2UA 4AVMA 4EZWA 4NSWA 2X3XA 1R5EA 4EZXA 2JNSA 1SU8A 3A98A 4E81A 2YIAA 1ZYLA 1I4LA 2RT6A 3SOGA 2LM0A 3QWEA 3DPOA 3DPQA 3EJPA 1PS3A 3Q0KA 1HTYA 2F1BA 2OBMA 2YL9A 4IW0A 1I49A 4BNEA 3BUQA 1Y2OA 2O0I1 4AZ7A 2YLLA 2Z0OA 4DYLA 3BVVA 4UDXX 2D1LA 4JN4A 3VKHA 2YL5A 3B52X 2OW7A 5FIGA 4JWEA 3HAIA 1SU7A 2QKWA 3T49A 3T48A 1I4TA 3ZEDA 4AZGA 3EJQA 4AZCB 3D52A 1URUA 3ER9B 4R5GA 3HAHA 2Z8YA 4FZPA 4E3CA 3OHXM 1MJGA 3BVTA 3ACOA 1OAOA 4NQIA 2PY6A 3UITA 3T4AG 3CZNA 2EFLA 5TKYA 2EWFA 3OWGA 3PLTA 3SYVA 3CZSA 4WPEA 1TQSA 3D2FA 3RPMA 3D50A 3OK8A 3ABHA 4HR1B 5KBPA 3T46A 4B9QA 1R34A 3T47A 1SUFA 3I01A 1E9VA 2X3WA 3O3NB 4EZYA 2YIBA 3CVRA 2N3KA 3EJUA 3CAZA 3M3WA 2GF4A 3LMFA 3D4ZA 4AZCA 1DKXA 4IWOA 3BUPA 1QX1A 4AZ6A 2ALWA 2YI9A 4EZVA 4HYBA 2Q12A 4EZNA 3Q84A 3KAVA 2KHOA 2EX3B 1ZWWA 3KAWA 4IM2A 2WYIA 3RV0A 1O7DC 1TQWA 4EZRA 3DX4A 2FYVA 3EJSA 1HWWA 4R5JA 4JLCA 1UPXA 2RAKA 1GNTA 2Z0VA 2GA9D 2C08A 2X3VA 4JNFA 3DX3A 4HR1A 4FM3A 2EFKA 1JQKA 1I4DA 1TQUA 3BUDA 3B51X 4EZSA 2D4CA 3RV1A 3ER8C 4AZIA 3DDGA 3LVTA 3BUBA 4KIKB 3O3OB 2WYHA 2RAIA 4HY9A 3LLLA
chains in the Genus database with same CATH topology
2OBMA 4G6QA 4JWIA 4IW0A 1GNLA 3I01A 3I04A 1E9VA 1OA1A 2NCZA 3O3NB 4EZYA 2YIBA 2YI8A 2N3KA 4IM3A 4JWDA 4R5KA 4D8JA 4F01A 4EZUA 3QNJA 3B53X 3LMFA 4UDXX 1DKXA 3FD9A 4IWOA 4F00A 2ND0A 3DPPA 4H6HA 4JN4A 3VKHA 2YIVX 3B52X 3F7WA 1E1DA 3QA8A 5FIGA 4JWEA 3GI7A 1SU7A 2ND1A 2YI9A 4IWQA 4EZVA 4HYBA 2WINM 3T49A 4EZNA 3KAVA 3T48A 2KHOA 3ZEDA 2EX3B 4PO2A 4H6IA 3KAWA 5E84A 4IM2A 3ER9B 2QFFA 4EZTA 3D2EA 4JL9A 3C7NA 4JNEA 4R5GA 2Z8YA 4IM0A 3RV0A 4R5LA 4EZOA 2X5CA 2GAFD 4E3CA 4EZRA 3OHXM 3KDRA 4EZPA 4EZZA 1MJGA 4R5IA 3ERCC 4IWPA 3O3MB 3VEAA 1OA0A 1DKYA 2OBLA 1OAOA 1DKZA 3L3OM 1W9MA 1SU6A 4R5JA 4JLCA 1UPXA 2QXLA 2PY6A 3I39X 1GNTA 1E2UA 4JWCA 4EZWA 3UITA 2GA9D 5FLEX 3T4AG 4JNFA 4KIKA 4HR1A 4FM3A 5TKYA 1JQKA 4EZXA 2EWFA 2JNSA 4UDYX 1GN9A 3OWGA 1SU8A 3A98A 3B51X 4EZSA 4E81A 3VEBA 3RV1A 2YIAA 3ER8C 1ZYLA 4NPHA 2RT6A 4EZQA 2LM0A 3D2FA 3DPOA 4KIKB 3O3OB 1U00A 4HR1B 3T46A 4B9QA 4HY9A 4M0MA 3T47A 3DPQA 1SUFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ND1 A;  2N3K A;  2NCZ A;  2JNS A;  2ND0 A; 
#chains in the Genus database with same CATH topology
 4G6Q A;  4JWI A;  1QWU A;  2OZN B;  1OA1 A;  3DX2 A;  3QE6 A;  2PMR A;  2MI7 A;  2YI8 A;  4R5K A;  3CV5 A;  4F01 A;  2F7R A;  4FZS A;  4EZU A;  3QNJ A;  3B53 X;  4WPC A;  3FD9 A;  4F00 A;  3DPP A;  4H8S A;  4AZB A;  2FIC A;  3EJT A;  5C5B B;  2Z0N A;  1WDZ A;  3GI7 A;  2ND1 A;  4IWQ A;  2WIN M;  4ATM A;  2F7O A;  1TQV A;  1TQT A;  2F7P A;  1O7D B;  3C7N A;  3EJR A;  4R5L A;  2X5C A;  2YLA A;  1YWM A;  3KDR A;  3BVU A;  1X03 A;  3QNI A;  3ERC C;  4IWP A;  2ELB A;  1DKY A;  2OBL A;  3L3O M;  1W9M A;  1SU6 A;  3L3P A;  4JWC A;  3DDF A;  5FLE X;  4AZ5 A;  2RAJ A;  3HAJ A;  4KIK A;  3BLB A;  4UDY X;  1GN9 A;  2YL8 A;  1X04 A;  3VEB A;  4NPH A;  3CKD A;  3D51 A;  4EZQ A;  3BVW A;  1U00 A;  3BVX A;  4M0M A;  2JNK A;  1GNL A;  3I04 A;  5C5B A;  2NCZ A;  1QWN A;  3DX0 A;  1LQ7 A;  3I2W A;  4AZH A;  4IM3 A;  4JWD A;  3D4Y A;  3DX1 A;  4D8J A;  1R33 A;  3BUI A;  4DCN C;  2ND0 A;  4H6H A;  2YIV X;  3F7W A;  2OW6 A;  1HXK A;  1E1D A;  3G9G A;  3QA8 A;  2F1A A;  2Q13 A;  2ZXQ A;  4FZO A;  4PO2 A;  4H6I A;  2F18 A;  3DYT A;  5E84 A;  2LXY A;  2QFF A;  4EZT A;  3D2E A;  2YL6 A;  4JNE A;  4JL9 A;  4I1Q A;  4IM0 A;  4EZO A;  2GAF D;  4EZP A;  4EZZ A;  2F7Q A;  4R5I A;  2OO2 A;  3O3M B;  2YKT A;  3VEA A;  1OA0 A;  1DKZ A;  2V0O A;  2QXL A;  4AKV A;  3I39 X;  1E2U A;  4AVM A;  4EZW A;  4NSW A;  2X3X A;  1R5E A;  4EZX A;  2JNS A;  1SU8 A;  3A98 A;  4E81 A;  2YIA A;  1ZYL A;  1I4L A;  2RT6 A;  3SOG A;  2LM0 A;  3QWE A;  3DPO A;  3DPQ A;  3EJP A;  1PS3 A;  3Q0K A;  1HTY A;  2F1B A;  2OBM A;  2YL9 A;  4IW0 A;  1I49 A;  4BNE A;  3BUQ A;  1Y2O A;  2O0I 1;  4AZ7 A;  2YLL A;  2Z0O A;  4DYL A;  3BVV A;  4UDX X;  2D1L A;  4JN4 A;  3VKH A;  2YL5 A;  3B52 X;  2OW7 A;  5FIG A;  4JWE A;  3HAI A;  1SU7 A;  2QKW A;  3T49 A;  3T48 A;  1I4T A;  3ZED A;  4AZG A;  3EJQ A;  4AZC B;  3D52 A;  1URU A;  3ER9 B;  4R5G A;  3HAH A;  2Z8Y A;  4FZP A;  4E3C A;  3OHX M;  1MJG A;  3BVT A;  3ACO A;  1OAO A;  4NQI A;  2PY6 A;  3UIT A;  3T4A G;  3CZN A;  2EFL A;  5TKY A;  2EWF A;  3OWG A;  3PLT A;  3SYV A;  3CZS A;  4WPE A;  1TQS A;  3D2F A;  3RPM A;  3D50 A;  3OK8 A;  3ABH A;  4HR1 B;  5KBP A;  3T46 A;  4B9Q A;  1R34 A;  3T47 A;  1SUF A;  3I01 A;  1E9V A;  2X3W A;  3O3N B;  4EZY A;  2YIB A;  3CVR A;  2N3K A;  3EJU A;  3CAZ A;  3M3W A;  2GF4 A;  3LMF A;  3D4Z A;  4AZC A;  1DKX A;  4IWO A;  3BUP A;  1QX1 A;  4AZ6 A;  2ALW A;  2YI9 A;  4EZV A;  4HYB A;  2Q12 A;  4EZN A;  3Q84 A;  3KAV A;  2KHO A;  2EX3 B;  1ZWW A;  3KAW A;  4IM2 A;  2WYI A;  3RV0 A;  1O7D C;  1TQW A;  4EZR A;  3DX4 A;  2FYV A;  3EJS A;  1HWW A;  4R5J A;  4JLC A;  1UPX A;  2RAK A;  1GNT A;  2Z0V A;  2GA9 D;  2C08 A;  2X3V A;  4JNF A;  3DX3 A;  4HR1 A;  4FM3 A;  2EFK A;  1JQK A;  1I4D A;  1TQU A;  3BUD A;  3B51 X;  4EZS A;  2D4C A;  3RV1 A;  3ER8 C;  4AZI A;  3DDG A;  3LVT A;  3BUB A;  4KIK B;  3O3O B;  2WYH A;  2RAI A;  4HY9 A;  3LLL A; 
#chains in the Genus database with same CATH homology
 2OBM A;  4G6Q A;  4JWI A;  4IW0 A;  1GNL A;  3I01 A;  3I04 A;  1E9V A;  1OA1 A;  2NCZ A;  3O3N B;  4EZY A;  2YIB A;  2YI8 A;  2N3K A;  4IM3 A;  4JWD A;  4R5K A;  4D8J A;  4F01 A;  4EZU A;  3QNJ A;  3B53 X;  3LMF A;  4UDX X;  1DKX A;  3FD9 A;  4IWO A;  4F00 A;  2ND0 A;  3DPP A;  4H6H A;  4JN4 A;  3VKH A;  2YIV X;  3B52 X;  3F7W A;  1E1D A;  3QA8 A;  5FIG A;  4JWE A;  3GI7 A;  1SU7 A;  2ND1 A;  2YI9 A;  4IWQ A;  4EZV A;  4HYB A;  2WIN M;  3T49 A;  4EZN A;  3KAV A;  3T48 A;  2KHO A;  3ZED A;  2EX3 B;  4PO2 A;  4H6I A;  3KAW A;  5E84 A;  4IM2 A;  3ER9 B;  2QFF A;  4EZT A;  3D2E A;  4JL9 A;  3C7N A;  4JNE A;  4R5G A;  2Z8Y A;  4IM0 A;  3RV0 A;  4R5L A;  4EZO A;  2X5C A;  2GAF D;  4E3C A;  4EZR A;  3OHX M;  3KDR A;  4EZP A;  4EZZ A;  1MJG A;  4R5I A;  3ERC C;  4IWP A;  3O3M B;  3VEA A;  1OA0 A;  1DKY A;  2OBL A;  1OAO A;  1DKZ A;  3L3O M;  1W9M A;  1SU6 A;  4R5J A;  4JLC A;  1UPX A;  2QXL A;  2PY6 A;  3I39 X;  1GNT A;  1E2U A;  4JWC A;  4EZW A;  3UIT A;  2GA9 D;  5FLE X;  3T4A G;  4JNF A;  4KIK A;  4HR1 A;  4FM3 A;  5TKY A;  1JQK A;  4EZX A;  2EWF A;  2JNS A;  4UDY X;  1GN9 A;  3OWG A;  1SU8 A;  3A98 A;  3B51 X;  4EZS A;  4E81 A;  3VEB A;  3RV1 A;  2YIA A;  3ER8 C;  1ZYL A;  4NPH A;  2RT6 A;  4EZQ A;  2LM0 A;  3D2F A;  3DPO A;  4KIK B;  3O3O B;  1U00 A;  4HR1 B;  3T46 A;  4B9Q A;  4HY9 A;  4M0M A;  3T47 A;  3DPQ A;  1SUF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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