2NY9X

Nmr structure of def-abb, a mutant of anopheles defensin def-aaa
Total Genus 6
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
41
structure length
41
Chain Sequence
ATCDLASGFGVGSSLCAAHCLVKGYRGGYCKNKICHCRDKF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Antimicrobial protein
molecule keywords defensin, mutant DEF-ABB
publication title Rational design of peptides active against the gram positive bacteria Staphylococcus aureus
pubmed doi rcsb
source organism Anopheles gambiae
total genus 6
structure length 41
sequence length 41
ec nomenclature
pdb deposition date 2006-11-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF01097 Defensin_2 Arthropod defensin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 2ny9X00
1SN4A 1BRZA 1T1TA 1VNAA 2KSKA 2SN3A 2LY6A 3E7RL 4AAZA 1CN2A 2N2RA 1ZYVA 2LKBA 1PTXA 1NRAA 4V1DC 2KJAA 1N4NA 1NH5A 1ZFUA 2LI7A 2ASCA 1LQIA 4CQKA 1WT7A 1BCGA 2ATBA 1T7EA 1I2VA 1FH3A 1T0ZA 1CHZA 1GPTA 2LJMA 2LT8A 2YEOA 1NPIA 4HE7A 1JKZA 2E0HA 2KBKA 4AEIA 1WWNA 1BK8A 2E3FA 2A7TA 1ZYWA 1T7AA 2BRZA 3E7UX 1JXCA 2KBHA 1BMRA 1PE4A 1ICAA 1KV0A 1VNBA 1ZVGA 2NY8X 2GL1A 1ZUTA 2B3CA 1DQ7A 1P00A 1ZU3A 1OMYA 2KBJA 2LR3A 5KK4A 1ZVEA 1GPSA 2LY5A 2N66A 2E3GA 1L4VA 1AHOA 2I61A 2YC1C 1SNBA 1LQHA 2B68A 5CY0A 4KYPA 1B7DA 1JZAA 1B3CA 1WMTA 2N69A 1AYJA 1JZBA 1I6FA 1TI5A 2MZ0A 1SN1A 1T7BA 1NRBA 1P0AA 2KYQA 1C55A 4UJ0A 2N2QA 4AB0A 1I2UA 2KPYA 3PSMA 1DJTA 2NY9X 1C56A 1OZZA 2YBRC 2LJ7A 4HHFA 1LQQA 2KGQA 2M8BB 1SEGA 1I6GA 1MYNA 1PX9A 1MR4A 1NE5A
chains in the Genus database with same CATH superfamily
1SN4A 1QQMA 1BRZA 1T1TA 1NGCA 1HPMA 1NGIA 3CQXA 5FPMA 2BUPA 2JDQD 1VNAA 3LDLA 2KSKA 3SF4D 2SN3A 2LY6A 3E7RL 5AQRA 3ATUA 4AAZA 3FZLA 1CN2A 3LDQA 2N2RA 3IUCA 1ZYVA 2LKBA 2GMOA 1PTXA 5F1XA 3BK3C 1HJOA 3KOWA 2YIPA 1NRAA 3KP1A 3KOXA 4V1DC 3D2EB 2KJAA 5AQIA 4KBOA 2D56A 5FPNA 1NGDA 3C7NA 5AQJA 2MBKA 1N4NA 1NH5A 5EY4A 1ZFUA 2QWLA 3ATVA 1KAXA 2LI7A 2ASCA 1LQIA 1NGFA 4CQKA 1WT7A 1BCGA 5BPMA 5AQXA 3R2VA 2ATBA 1T7EA 1DKGD 5BN8A 1I2VA 1FH3A 1T0ZA 1CHZA 1GPTA 2LJMA 2LT8A 2YEOA 1NPIA 4HE7A 1POIA 3KOZA 4IO8A 1JKZA 3GDQA 3LDNA 3QMLA 1S3XA 2V7ZA 3FZKA 2VY6A 1NGBA 2E0HA 2KBKA 3A8YA 3FE1A 4AEIA 5BN9A 3KHWA 1WWNA 1BK8A 2E3FA 2A7TA 1ZYWA 1T7AA 2BRZA 5EX5A 4H5TA 5AQMA 1KAYA 3E7UX 1JXCA 1NGGA 3FZMA 2KBHA 4H5WA 5AQLA 2YILA 1BMRA 2QWMA 3KVGA 1NGAA 5AQGA 1PE4A 5FPEA 1ICAA 2E2FA 4UAEF 1NGJA 1KV0A 2QW9A 3L4IA 1UGLA 5AQKA 1VNBA 1ZVGA 2NY8X 3I33A 2KHOA 2GL1A 2QXLA 1ZUTA 2B3CA 1DQ7A 1P00A 1ZU3A 1OMYA 3GKUA 3FZFA 3M3ZA 4UAFE 2KBJA 2G2KA 5AQTA 5AQFA 2LR3A 5EVZA 1BUPA 1ATSA 5KK4A 2QWRA 3GL1A 1ZVEA 1ATRA 1K8BA 1HX1A 5F2RA 2QWPA 1GPSA 5AQVA 2LY5A 2N66A 1BA1A 3L56A 3C7NB 2E88A 1QQOA 5AQUA 3L6QA 2E3GA 2QWQA 4FSVA 1AHOA 2I61A 2YC1C 1SNBA 5BPNA 1L4VA 3D2FB 1LQHA 2B68A 5CY0A 1XRSB 3KC6A 1B7DA 1JZAA 2MN5A 4KYPA 1B3CA 3JXUA 1KAZA 1WMTA 5AQPA 1NGHA 3D2EA 3QFPA 2N69A 1AYJA 1QQNA 1JZBA 1I6FA 1TI5A 2MZ0A 1SN1A 1T7BA 4H5VA 1NRBA 3HSCA 1P0AA 2KYQA 5AQZA 1C55A 4UADE 4UJ0A 3AY9A 5AQYA 2N2QA 5EXWA 4AB0A 5F0XA 1I2UA 4HWIA 2KPYA 1BA0A 3PSMA 3CW4A 1NGEA 2K35A 2QWOA 5AQWA 2QWNA 1DJTA 2NY9X 3LDOA 5AQHA 4H5RA 1C56A 1OZZA 4H5NA 5AQOA 2YBRC 2LJ7A 4FL9A 3FZHA 4HHFA 1LQQA 2YIOA 3KOYA 3KP0A 2KGQA 2M8BB 5FPDA 1SEGA 3LDPA 1I6GA 3D2FA 1YUWA 2LN8A 3QI7A 5AQNA 5AQSA 3QFUA 2E8AA 5AR0A 5BPLA 4GNIA 1MYNA 1PX9A 1MR4A 1NE5A 5AQQA
chains in the Genus database with same CATH topology
1SN4A 1BRZA 1T1TA 1VNAA 2KSKA 2SN3A 2LY6A 3E7RL 4AAZA 1CN2A 2N2RA 1ZYVA 2LKBA 1PTXA 1NRAA 4V1DC 2KJAA 1N4NA 1NH5A 1ZFUA 2LI7A 2ASCA 1LQIA 4CQKA 1WT7A 1BCGA 2ATBA 1T7EA 1I2VA 1FH3A 1T0ZA 1CHZA 1GPTA 2LJMA 2LT8A 2YEOA 1NPIA 4HE7A 1JKZA 2E0HA 2KBKA 4AEIA 1WWNA 1BK8A 2E3FA 2A7TA 1ZYWA 1T7AA 2BRZA 3E7UX 1JXCA 2KBHA 1BMRA 1PE4A 1ICAA 1KV0A 1VNBA 1ZVGA 2NY8X 2GL1A 1ZUTA 2B3CA 1DQ7A 1P00A 1ZU3A 1OMYA 2KBJA 2LR3A 5KK4A 1ZVEA 1GPSA 2LY5A 2N66A 2E3GA 1L4VA 1AHOA 2I61A 2YC1C 1SNBA 1LQHA 2B68A 5CY0A 4KYPA 1B7DA 1JZAA 1B3CA 1WMTA 2N69A 1AYJA 1JZBA 1I6FA 1TI5A 2MZ0A 1SN1A 1T7BA 1NRBA 1P0AA 2KYQA 1C55A 4UJ0A 2N2QA 4AB0A 1I2UA 2KPYA 3PSMA 1DJTA 2NY9X 1C56A 1OZZA 2YBRC 2LJ7A 4HHFA 1LQQA 2KGQA 2M8BB 1SEGA 1I6GA 1MYNA 1PX9A 1MR4A 1NE5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1SN4 A;  1BRZ A;  1T1T A;  1VNA A;  2KSK A;  2SN3 A;  2LY6 A;  3E7R L;  4AAZ A;  1CN2 A;  2N2R A;  1ZYV A;  2LKB A;  1PTX A;  1NRA A;  4V1D C;  2KJA A;  1N4N A;  1NH5 A;  1ZFU A;  2LI7 A;  2ASC A;  1LQI A;  4CQK A;  1WT7 A;  1BCG A;  2ATB A;  1T7E A;  1I2V A;  1FH3 A;  1T0Z A;  1CHZ A;  1GPT A;  2LJM A;  2LT8 A;  2YEO A;  1NPI A;  4HE7 A;  1JKZ A;  2E0H A;  2KBK A;  4AEI A;  1WWN A;  1BK8 A;  2E3F A;  2A7T A;  1ZYW A;  1T7A A;  2BRZ A;  3E7U X;  1JXC A;  2KBH A;  1BMR A;  1PE4 A;  1ICA A;  1KV0 A;  1VNB A;  1ZVG A;  2NY8 X;  2GL1 A;  1ZUT A;  2B3C A;  1DQ7 A;  1P00 A;  1ZU3 A;  1OMY A;  2KBJ A;  2LR3 A;  5KK4 A;  1ZVE A;  1GPS A;  2LY5 A;  2N66 A;  2E3G A;  1L4V A;  1AHO A;  2I61 A;  2YC1 C;  1SNB A;  1LQH A;  2B68 A;  5CY0 A;  4KYP A;  1B7D A;  1JZA A;  1B3C A;  1WMT A;  2N69 A;  1AYJ A;  1JZB A;  1I6F A;  1TI5 A;  2MZ0 A;  1SN1 A;  1T7B A;  1NRB A;  1P0A A;  2KYQ A;  1C55 A;  4UJ0 A;  2N2Q A;  4AB0 A;  1I2U A;  2KPY A;  3PSM A;  1DJT A;  2NY9 X;  1C56 A;  1OZZ A;  2YBR C;  2LJ7 A;  4HHF A;  1LQQ A;  2KGQ A;  2M8B B;  1SEG A;  1I6G A;  1MYN A;  1PX9 A;  1MR4 A;  1NE5 A; 
#chains in the Genus database with same CATH topology
 1SN4 A;  1QQM A;  1BRZ A;  1T1T A;  1NGC A;  1HPM A;  1NGI A;  3CQX A;  5FPM A;  2BUP A;  2JDQ D;  1VNA A;  3LDL A;  2KSK A;  3SF4 D;  2SN3 A;  2LY6 A;  3E7R L;  5AQR A;  3ATU A;  4AAZ A;  3FZL A;  1CN2 A;  3LDQ A;  2N2R A;  3IUC A;  1ZYV A;  2LKB A;  2GMO A;  1PTX A;  5F1X A;  3BK3 C;  1HJO A;  3KOW A;  2YIP A;  1NRA A;  3KP1 A;  3KOX A;  4V1D C;  3D2E B;  2KJA A;  5AQI A;  4KBO A;  2D56 A;  5FPN A;  1NGD A;  3C7N A;  5AQJ A;  2MBK A;  1N4N A;  1NH5 A;  5EY4 A;  1ZFU A;  2QWL A;  3ATV A;  1KAX A;  2LI7 A;  2ASC A;  1LQI A;  1NGF A;  4CQK A;  1WT7 A;  1BCG A;  5BPM A;  5AQX A;  3R2V A;  2ATB A;  1T7E A;  1DKG D;  5BN8 A;  1I2V A;  1FH3 A;  1T0Z A;  1CHZ A;  1GPT A;  2LJM A;  2LT8 A;  2YEO A;  1NPI A;  4HE7 A;  1POI A;  3KOZ A;  4IO8 A;  1JKZ A;  3GDQ A;  3LDN A;  3QML A;  1S3X A;  2V7Z A;  3FZK A;  2VY6 A;  1NGB A;  2E0H A;  2KBK A;  3A8Y A;  3FE1 A;  4AEI A;  5BN9 A;  3KHW A;  1WWN A;  1BK8 A;  2E3F A;  2A7T A;  1ZYW A;  1T7A A;  2BRZ A;  5EX5 A;  4H5T A;  5AQM A;  1KAY A;  3E7U X;  1JXC A;  1NGG A;  3FZM A;  2KBH A;  4H5W A;  5AQL A;  2YIL A;  1BMR A;  2QWM A;  3KVG A;  1NGA A;  5AQG A;  1PE4 A;  5FPE A;  1ICA A;  2E2F A;  4UAE F;  1NGJ A;  1KV0 A;  2QW9 A;  3L4I A;  1UGL A;  5AQK A;  1VNB A;  1ZVG A;  2NY8 X;  3I33 A;  2KHO A;  2GL1 A;  2QXL A;  1ZUT A;  2B3C A;  1DQ7 A;  1P00 A;  1ZU3 A;  1OMY A;  3GKU A;  3FZF A;  3M3Z A;  4UAF E;  2KBJ A;  2G2K A;  5AQT A;  5AQF A;  2LR3 A;  5EVZ A;  1BUP A;  1ATS A;  5KK4 A;  2QWR A;  3GL1 A;  1ZVE A;  1ATR A;  1K8B A;  1HX1 A;  5F2R A;  2QWP A;  1GPS A;  5AQV A;  2LY5 A;  2N66 A;  1BA1 A;  3L56 A;  3C7N B;  2E88 A;  1QQO A;  5AQU A;  3L6Q A;  2E3G A;  2QWQ A;  4FSV A;  1AHO A;  2I61 A;  2YC1 C;  1SNB A;  5BPN A;  1L4V A;  3D2F B;  1LQH A;  2B68 A;  5CY0 A;  1XRS B;  3KC6 A;  1B7D A;  1JZA A;  2MN5 A;  4KYP A;  1B3C A;  3JXU A;  1KAZ A;  1WMT A;  5AQP A;  1NGH A;  3D2E A;  3QFP A;  2N69 A;  1AYJ A;  1QQN A;  1JZB A;  1I6F A;  1TI5 A;  2MZ0 A;  1SN1 A;  1T7B A;  4H5V A;  1NRB A;  3HSC A;  1P0A A;  2KYQ A;  5AQZ A;  1C55 A;  4UAD E;  4UJ0 A;  3AY9 A;  5AQY A;  2N2Q A;  5EXW A;  4AB0 A;  5F0X A;  1I2U A;  4HWI A;  2KPY A;  1BA0 A;  3PSM A;  3CW4 A;  1NGE A;  2K35 A;  2QWO A;  5AQW A;  2QWN A;  1DJT A;  2NY9 X;  3LDO A;  5AQH A;  4H5R A;  1C56 A;  1OZZ A;  4H5N A;  5AQO A;  2YBR C;  2LJ7 A;  4FL9 A;  3FZH A;  4HHF A;  1LQQ A;  2YIO A;  3KOY A;  3KP0 A;  2KGQ A;  2M8B B;  5FPD A;  1SEG A;  3LDP A;  1I6G A;  3D2F A;  1YUW A;  2LN8 A;  3QI7 A;  5AQN A;  5AQS A;  3QFU A;  2E8A A;  5AR0 A;  5BPL A;  4GNI A;  1MYN A;  1PX9 A;  1MR4 A;  1NE5 A;  5AQQ A; 
#chains in the Genus database with same CATH homology
 1SN4 A;  1BRZ A;  1T1T A;  1VNA A;  2KSK A;  2SN3 A;  2LY6 A;  3E7R L;  4AAZ A;  1CN2 A;  2N2R A;  1ZYV A;  2LKB A;  1PTX A;  1NRA A;  4V1D C;  2KJA A;  1N4N A;  1NH5 A;  1ZFU A;  2LI7 A;  2ASC A;  1LQI A;  4CQK A;  1WT7 A;  1BCG A;  2ATB A;  1T7E A;  1I2V A;  1FH3 A;  1T0Z A;  1CHZ A;  1GPT A;  2LJM A;  2LT8 A;  2YEO A;  1NPI A;  4HE7 A;  1JKZ A;  2E0H A;  2KBK A;  4AEI A;  1WWN A;  1BK8 A;  2E3F A;  2A7T A;  1ZYW A;  1T7A A;  2BRZ A;  3E7U X;  1JXC A;  2KBH A;  1BMR A;  1PE4 A;  1ICA A;  1KV0 A;  1VNB A;  1ZVG A;  2NY8 X;  2GL1 A;  1ZUT A;  2B3C A;  1DQ7 A;  1P00 A;  1ZU3 A;  1OMY A;  2KBJ A;  2LR3 A;  5KK4 A;  1ZVE A;  1GPS A;  2LY5 A;  2N66 A;  2E3G A;  1L4V A;  1AHO A;  2I61 A;  2YC1 C;  1SNB A;  1LQH A;  2B68 A;  5CY0 A;  4KYP A;  1B7D A;  1JZA A;  1B3C A;  1WMT A;  2N69 A;  1AYJ A;  1JZB A;  1I6F A;  1TI5 A;  2MZ0 A;  1SN1 A;  1T7B A;  1NRB A;  1P0A A;  2KYQ A;  1C55 A;  4UJ0 A;  2N2Q A;  4AB0 A;  1I2U A;  2KPY A;  3PSM A;  1DJT A;  2NY9 X;  1C56 A;  1OZZ A;  2YBR C;  2LJ7 A;  4HHF A;  1LQQ A;  2KGQ A;  2M8B B;  1SEG A;  1I6G A;  1MYN A;  1PX9 A;  1MR4 A;  1NE5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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