2OJXA

Molecular and structural basis of polo-like kinase 1 substrate recognition: implications in centrosomal localization
Total Genus 61
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
61
sequence length
222
structure length
204
Chain Sequence
HLSDMLQQLHSVNASKPSERGLVRQEEAEDPACIPIFWVSKWVDYSDKYGLGYQLCDNSVGVLFNDSTRLILYNDGDSLQYIERDGTESYLTVSSHPNSLMKKITLLKYFRNYMSERLPYLRTWFRTRSAIILHLSNGSVQINFFQDHTKLILCPLMAAVTYIDEKRDFRTYRLSLLEEYGCCKELASRLRYARTMVDKLLSSR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transferase
molecule keywords Serine/threonine-protein kinase PLK1
publication title Molecular and structural basis of polo-like kinase 1 substrate recognition: Implications in centrosomal localization.
pubmed doi rcsb
source organism Homo sapiens
total genus 61
structure length 204
sequence length 222
ec nomenclature ec 2.7.11.21: Polo kinase.
pdb deposition date 2007-01-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00659 POLO_box POLO box duplicated region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1120.30 Alpha Beta 2-Layer Sandwich Arylsulfatase, C-terminal domain POLO box domain 2ojxA02
3.30.1120.30 Alpha Beta 2-Layer Sandwich Arylsulfatase, C-terminal domain POLO box domain 2ojxA01
4O9WA 4O56A 1UMWA 5LHZA 4XB0A 3Q1IA 4X9RA 4O6WA 4E9DA 4WHKA 2OJXA 3P37A 4RS6A 4LKLA 4HABA 3P2WA 4X9VA 5DMVC 2OGQA 5DNJA 4E67A 4LKMA 4X9WA 2N19A 4DFWA 1Q4KA 3HIKA 4RCPA 4H71A 5J19A 3P34A 3FVHA 3BZIA 1Q4OA 4J7BB 4YYPA 4WHLA 3P36A 3RQ7A 4WHHA 5DMSA 3HIHA 4H5XA 3P2ZA 3P35A 4E9CA 4HCOA 3C5LA 4HY2A
chains in the Genus database with same CATH superfamily
3Q1IA 1HDHA 1E33P 3P37A 4RS6A 4FDJA 1N2KA 4E67A 4X9WA 4H71A 3P34A 4J7BB 3LM3A 1E1ZP 4N7ZA 3P36A 3RQ7A 1F34B 3P2ZA 4CXUA 3C5LA 4HY2A 4O9WA 1F32A 4G7NA 4O56A 1UMWA 2QZUA 1A87A 4XB0A 4NKBA 4CYSA 4N9JA 4LKLA 4HABA 3P2WA 4X9VA 2OGQA 5DNJA 4LKMA 4DFWA 1E2TA 4YYPA 5DAYA 4WHLA 4WHHA 5DMSA 3HIHA 4H5XA 1FSUA 3FS3A 4FDIA 5LHZA 2IA9A 2OJXA 4N7VA 5DMVC 2N19A 4NK7A 1Q4KA 1E3CP 4CYRA 3FVHA 3HMJG 4E9CA 3P35A 4HCOA 4CXKA 1P49A 3KDRA 3GYWA 2E50A 4X9RA 3HFDA 4O6WA 4E9DA 2UV8G 1AUKA 4WHKA 2I9ZA 1E2SP 3LXQA 5AJ9A 3GYVA 1N2LA 3HIKA 4RCPA 5J19A 3BZIA 4CXSA 1Q4OA 2VKZG 3ED4A 2I9XA
chains in the Genus database with same CATH topology
4O9WA 4O56A 1UMWA 5LHZA 4XB0A 3Q1IA 4X9RA 4O6WA 4E9DA 4WHKA 2OJXA 3P37A 4RS6A 4LKLA 4HABA 3P2WA 4X9VA 5DMVC 2OGQA 5DNJA 4E67A 4LKMA 4X9WA 2N19A 4DFWA 1Q4KA 3HIKA 4RCPA 4H71A 5J19A 3P34A 3FVHA 3BZIA 1Q4OA 4J7BB 4YYPA 4WHLA 3P36A 3RQ7A 4WHHA 5DMSA 3HIHA 4H5XA 3P2ZA 3P35A 4E9CA 4HCOA 3C5LA 4HY2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4O9W A;  4O56 A;  1UMW A;  5LHZ A;  4XB0 A;  3Q1I A;  4X9R A;  4O6W A;  4E9D A;  4WHK A;  2OJX A;  3P37 A;  4RS6 A;  4LKL A;  4HAB A;  3P2W A;  4X9V A;  5DMV C;  2OGQ A;  5DNJ A;  4E67 A;  4LKM A;  4X9W A;  2N19 A;  4DFW A;  1Q4K A;  3HIK A;  4RCP A;  4H71 A;  5J19 A;  3P34 A;  3FVH A;  3BZI A;  1Q4O A;  4J7B B;  4YYP A;  4WHL A;  3P36 A;  3RQ7 A;  4WHH A;  5DMS A;  3HIH A;  4H5X A;  3P2Z A;  3P35 A;  4E9C A;  4HCO A;  3C5L A;  4HY2 A; 
#chains in the Genus database with same CATH topology
 3Q1I A;  1HDH A;  1E33 P;  3P37 A;  4RS6 A;  4FDJ A;  1N2K A;  4E67 A;  4X9W A;  4H71 A;  3P34 A;  4J7B B;  3LM3 A;  1E1Z P;  4N7Z A;  3P36 A;  3RQ7 A;  1F34 B;  3P2Z A;  4CXU A;  3C5L A;  4HY2 A;  4O9W A;  1F32 A;  4G7N A;  4O56 A;  1UMW A;  2QZU A;  1A87 A;  4XB0 A;  4NKB A;  4CYS A;  4N9J A;  4LKL A;  4HAB A;  3P2W A;  4X9V A;  2OGQ A;  5DNJ A;  4LKM A;  4DFW A;  1E2T A;  4YYP A;  5DAY A;  4WHL A;  4WHH A;  5DMS A;  3HIH A;  4H5X A;  1FSU A;  3FS3 A;  4FDI A;  5LHZ A;  2IA9 A;  2OJX A;  4N7V A;  5DMV C;  2N19 A;  4NK7 A;  1Q4K A;  1E3C P;  4CYR A;  3FVH A;  3HMJ G;  4E9C A;  3P35 A;  4HCO A;  4CXK A;  1P49 A;  3KDR A;  3GYW A;  2E50 A;  4X9R A;  3HFD A;  4O6W A;  4E9D A;  2UV8 G;  1AUK A;  4WHK A;  2I9Z A;  1E2S P;  3LXQ A;  5AJ9 A;  3GYV A;  1N2L A;  3HIK A;  4RCP A;  5J19 A;  3BZI A;  4CXS A;  1Q4O A;  2VKZ G;  3ED4 A;  2I9X A; 
#chains in the Genus database with same CATH homology
 4O9W A;  4O56 A;  1UMW A;  5LHZ A;  4XB0 A;  3Q1I A;  4X9R A;  4O6W A;  4E9D A;  4WHK A;  2OJX A;  3P37 A;  4RS6 A;  4LKL A;  4HAB A;  3P2W A;  4X9V A;  5DMV C;  2OGQ A;  5DNJ A;  4E67 A;  4LKM A;  4X9W A;  2N19 A;  4DFW A;  1Q4K A;  3HIK A;  4RCP A;  4H71 A;  5J19 A;  3P34 A;  3FVH A;  3BZI A;  1Q4O A;  4J7B B;  4YYP A;  4WHL A;  3P36 A;  3RQ7 A;  4WHH A;  5DMS A;  3HIH A;  4H5X A;  3P2Z A;  3P35 A;  4E9C A;  4HCO A;  3C5L A;  4HY2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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