2OWKA

Crystal structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGMHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords diphthine synthase
publication title Crystal structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
total genus 83
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-02-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2owkA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2owkA01
2OWFA 2EEQA 2EGLA 2PCMA 2QBUA 2EL3A 2E8SA 2DSIA 1PJQA 2DV7A 2E4NA 1VA0A 2ELEA 2EH4A 2ZVBA 1V9AA 2DEKA 2BB3A 2EH2A 2PCIA 2E4RA 2OWKA 3FQ6A 2EJJA 2EKAA 1VE2A 2EH5A 3HH1A 2EN5A 2HUQA 2E15A 2DSHA 2HR8A 1WYZA 2PB6A 2ED3A 4E16A 2P2XA 2P6IA 2EGBA 2DV3A 2EK4A 2OWVA 2ED5A 2EK7A 5HW4A 2CBFA 2EK2A 2EL1A 2YBOA 2E8QA 2DXWA 2HUVA 2E07A 2E08A 2EMRA 2P6DA 2EMUA 1WNGA 2DV4A 2HUXA 2E8RA 2EHCA 2E0NA 1WDEA 1VHVA 3FFYA 2E8HA 3KWPA 2PB5A 2YBQA 2DXXA 2PCAA 1VCEA 3NEIA 2EK3A 2P5CA 2ZVCA 2P6LA 2ELDA 2P6KA 2EGSA 2ENIA 2OWUA 2EL0A 3ND1A 2EJKA 2E16A 2PCHA 3I4TA 1CBFA 2EJZA 2P5FA 2P9DA 3NUTA 2DSGA 2Z6RA 2DXVA 2PCKA 2NPNA 3NDCA 1S4DA 2EHLA 2E17A 1PJTA 1PJSA 2PCGA 2E7RA 2HUTA 2E0KA 2PB4A 2EL2A 2DV5A 2OWGA
chains in the Genus database with same CATH superfamily
2OWFA 2EEQA 2EGLA 2PCMA 2QBUA 2EL3A 2E8SA 2DSIA 1PJQA 2DV7A 2E4NA 1VA0A 2ELEA 2EH4A 2ZVBA 1V9AA 2DEKA 2BB3A 3KEMA 2EH2A 3URKA 2PCIA 3ZGNA 2E4RA 2OWKA 3FQ6A 2EJJA 2EKAA 3KE8A 1VE2A 2EH5A 4H4DA 3ZGLA 3HH1A 2EN5A 2HUQA 4N7BA 3KE9A 2E15A 2DSHA 2HR8A 1WYZA 2PB6A 4MV5A 4MUXA 2ED3A 4E16A 4H4EA 2P2XA 2P6IA 2EGBA 2DV3A 2EK4A 2OWVA 2ED5A 2EK7A 5HW4A 2CBFA 2EK2A 2EL1A 2YBOA 2E8QA 2DXWA 2HUVA 2E07A 3T0GA 2E08A 3UWMA 2EMRA 2P6DA 3KEFA 3LMMA 2EMUA 4MV0A 1WNGA 2DV4A 2HUXA 2E8RA 2EHCA 3UV7A 2E0NA 1WDEA 1VHVA 3FFYA 2E8HA 3KWPA 3SZUA 2PB5A 2YBQA 2DXXA 2PCAA 4EB3A 3SZLA 1VCEA 3NEIA 3DNFA 2EK3A 3KELA 2P5CA 2ZVCA 2P6LA 2ELDA 2P6KA 2EGSA 2ENIA 2OWUA 3F7TA 2EL0A 3ND1A 2EJKA 2E16A 4H4CA 4MUYA 3UV6A 2PCHA 3I4TA 2KYYA 3T0FA 1CBFA 2EJZA 2P5FA 3UV3A 2P9DA 3NUTA 3UTDA 2DSGA 2Z6RA 3SZOA 2DXVA 2PCKA 2NPNA 3NDCA 1S4DA 2EHLA 2E17A 1PJTA 1PJSA 2PCGA 3TIXB 2E7RA 3UTCA 2HUTA 2E0KA 2PB4A 2EL2A 2DV5A 2OWGA
chains in the Genus database with same CATH topology
2OWFA 2EEQA 2EGLA 2PCMA 2QBUA 2EL3A 2E8SA 2DSIA 1PJQA 2DV7A 2E4NA 1VA0A 2ELEA 2EH4A 2ZVBA 1V9AA 2DEKA 2BB3A 3KEMA 2EH2A 3URKA 2PCIA 3ZGNA 2E4RA 2OWKA 3FQ6A 2EJJA 2EKAA 3KE8A 1VE2A 2EH5A 4H4DA 3ZGLA 3HH1A 2EN5A 2HUQA 4N7BA 3KE9A 2E15A 2DSHA 2HR8A 1WYZA 2PB6A 4MV5A 4MUXA 2ED3A 4E16A 4H4EA 2P2XA 2P6IA 2EGBA 2DV3A 2EK4A 2OWVA 2ED5A 2EK7A 5HW4A 2CBFA 2EK2A 2EL1A 2YBOA 2E8QA 2DXWA 2HUVA 2E07A 3T0GA 2E08A 3UWMA 2EMRA 2P6DA 3KEFA 3LMMA 2EMUA 4MV0A 1WNGA 2DV4A 2HUXA 2E8RA 2EHCA 3UV7A 2E0NA 1WDEA 1VHVA 3FFYA 2E8HA 3KWPA 3SZUA 2PB5A 2YBQA 2DXXA 2PCAA 4EB3A 3SZLA 1VCEA 3NEIA 3DNFA 2EK3A 3KELA 2P5CA 2ZVCA 2P6LA 2ELDA 2P6KA 2EGSA 2ENIA 2OWUA 3F7TA 2EL0A 3ND1A 2EJKA 2E16A 4H4CA 4MUYA 3UV6A 2PCHA 3I4TA 2KYYA 3T0FA 1CBFA 2EJZA 2P5FA 3UV3A 2P9DA 3NUTA 3UTDA 2DSGA 2Z6RA 3SZOA 2DXVA 2PCKA 2NPNA 3NDCA 1S4DA 2EHLA 2E17A 1PJTA 1PJSA 2PCGA 3TIXB 2E7RA 3UTCA 2HUTA 2E0KA 2PB4A 2EL2A 2DV5A 2OWGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OWF A;  2EEQ A;  2EGL A;  2PCM A;  2QBU A;  2EL3 A;  2E8S A;  2DSI A;  1PJQ A;  2DV7 A;  2E4N A;  1VA0 A;  2ELE A;  2EH4 A;  2ZVB A;  1V9A A;  2DEK A;  2BB3 A;  2EH2 A;  2PCI A;  2E4R A;  2OWK A;  3FQ6 A;  2EJJ A;  2EKA A;  1VE2 A;  2EH5 A;  3HH1 A;  2EN5 A;  2HUQ A;  2E15 A;  2DSH A;  2HR8 A;  1WYZ A;  2PB6 A;  2ED3 A;  4E16 A;  2P2X A;  2P6I A;  2EGB A;  2DV3 A;  2EK4 A;  2OWV A;  2ED5 A;  2EK7 A;  5HW4 A;  2CBF A;  2EK2 A;  2EL1 A;  2YBO A;  2E8Q A;  2DXW A;  2HUV A;  2E07 A;  2E08 A;  2EMR A;  2P6D A;  2EMU A;  1WNG A;  2DV4 A;  2HUX A;  2E8R A;  2EHC A;  2E0N A;  1WDE A;  1VHV A;  3FFY A;  2E8H A;  3KWP A;  2PB5 A;  2YBQ A;  2DXX A;  2PCA A;  1VCE A;  3NEI A;  2EK3 A;  2P5C A;  2ZVC A;  2P6L A;  2ELD A;  2P6K A;  2EGS A;  2ENI A;  2OWU A;  2EL0 A;  3ND1 A;  2EJK A;  2E16 A;  2PCH A;  3I4T A;  1CBF A;  2EJZ A;  2P5F A;  2P9D A;  3NUT A;  2DSG A;  2Z6R A;  2DXV A;  2PCK A;  2NPN A;  3NDC A;  1S4D A;  2EHL A;  2E17 A;  1PJT A;  1PJS A;  2PCG A;  2E7R A;  2HUT A;  2E0K A;  2PB4 A;  2EL2 A;  2DV5 A;  2OWG A; 
#chains in the Genus database with same CATH topology
 2OWF A;  2EEQ A;  2EGL A;  2PCM A;  2QBU A;  2EL3 A;  2E8S A;  2DSI A;  1PJQ A;  2DV7 A;  2E4N A;  1VA0 A;  2ELE A;  2EH4 A;  2ZVB A;  1V9A A;  2DEK A;  2BB3 A;  3KEM A;  2EH2 A;  3URK A;  2PCI A;  3ZGN A;  2E4R A;  2OWK A;  3FQ6 A;  2EJJ A;  2EKA A;  3KE8 A;  1VE2 A;  2EH5 A;  4H4D A;  3ZGL A;  3HH1 A;  2EN5 A;  2HUQ A;  4N7B A;  3KE9 A;  2E15 A;  2DSH A;  2HR8 A;  1WYZ A;  2PB6 A;  4MV5 A;  4MUX A;  2ED3 A;  4E16 A;  4H4E A;  2P2X A;  2P6I A;  2EGB A;  2DV3 A;  2EK4 A;  2OWV A;  2ED5 A;  2EK7 A;  5HW4 A;  2CBF A;  2EK2 A;  2EL1 A;  2YBO A;  2E8Q A;  2DXW A;  2HUV A;  2E07 A;  3T0G A;  2E08 A;  3UWM A;  2EMR A;  2P6D A;  3KEF A;  3LMM A;  2EMU A;  4MV0 A;  1WNG A;  2DV4 A;  2HUX A;  2E8R A;  2EHC A;  3UV7 A;  2E0N A;  1WDE A;  1VHV A;  3FFY A;  2E8H A;  3KWP A;  3SZU A;  2PB5 A;  2YBQ A;  2DXX A;  2PCA A;  4EB3 A;  3SZL A;  1VCE A;  3NEI A;  3DNF A;  2EK3 A;  3KEL A;  2P5C A;  2ZVC A;  2P6L A;  2ELD A;  2P6K A;  2EGS A;  2ENI A;  2OWU A;  3F7T A;  2EL0 A;  3ND1 A;  2EJK A;  2E16 A;  4H4C A;  4MUY A;  3UV6 A;  2PCH A;  3I4T A;  2KYY A;  3T0F A;  1CBF A;  2EJZ A;  2P5F A;  3UV3 A;  2P9D A;  3NUT A;  3UTD A;  2DSG A;  2Z6R A;  3SZO A;  2DXV A;  2PCK A;  2NPN A;  3NDC A;  1S4D A;  2EHL A;  2E17 A;  1PJT A;  1PJS A;  2PCG A;  3TIX B;  2E7R A;  3UTC A;  2HUT A;  2E0K A;  2PB4 A;  2EL2 A;  2DV5 A;  2OWG A; 
#chains in the Genus database with same CATH homology
 2OWF A;  2EEQ A;  2EGL A;  2PCM A;  2QBU A;  2EL3 A;  2E8S A;  2DSI A;  1PJQ A;  2DV7 A;  2E4N A;  1VA0 A;  2ELE A;  2EH4 A;  2ZVB A;  1V9A A;  2DEK A;  2BB3 A;  3KEM A;  2EH2 A;  3URK A;  2PCI A;  3ZGN A;  2E4R A;  2OWK A;  3FQ6 A;  2EJJ A;  2EKA A;  3KE8 A;  1VE2 A;  2EH5 A;  4H4D A;  3ZGL A;  3HH1 A;  2EN5 A;  2HUQ A;  4N7B A;  3KE9 A;  2E15 A;  2DSH A;  2HR8 A;  1WYZ A;  2PB6 A;  4MV5 A;  4MUX A;  2ED3 A;  4E16 A;  4H4E A;  2P2X A;  2P6I A;  2EGB A;  2DV3 A;  2EK4 A;  2OWV A;  2ED5 A;  2EK7 A;  5HW4 A;  2CBF A;  2EK2 A;  2EL1 A;  2YBO A;  2E8Q A;  2DXW A;  2HUV A;  2E07 A;  3T0G A;  2E08 A;  3UWM A;  2EMR A;  2P6D A;  3KEF A;  3LMM A;  2EMU A;  4MV0 A;  1WNG A;  2DV4 A;  2HUX A;  2E8R A;  2EHC A;  3UV7 A;  2E0N A;  1WDE A;  1VHV A;  3FFY A;  2E8H A;  3KWP A;  3SZU A;  2PB5 A;  2YBQ A;  2DXX A;  2PCA A;  4EB3 A;  3SZL A;  1VCE A;  3NEI A;  3DNF A;  2EK3 A;  3KEL A;  2P5C A;  2ZVC A;  2P6L A;  2ELD A;  2P6K A;  2EGS A;  2ENI A;  2OWU A;  3F7T A;  2EL0 A;  3ND1 A;  2EJK A;  2E16 A;  4H4C A;  4MUY A;  3UV6 A;  2PCH A;  3I4T A;  2KYY A;  3T0F A;  1CBF A;  2EJZ A;  2P5F A;  3UV3 A;  2P9D A;  3NUT A;  3UTD A;  2DSG A;  2Z6R A;  3SZO A;  2DXV A;  2PCK A;  2NPN A;  3NDC A;  1S4D A;  2EHL A;  2E17 A;  1PJT A;  1PJS A;  2PCG A;  3TIX B;  2E7R A;  3UTC A;  2HUT A;  2E0K A;  2PB4 A;  2EL2 A;  2DV5 A;  2OWG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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