2OZ9R

E. coli trp holorepressor, orthorhombic crystal form
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
104
structure length
104
Chain Sequence
SPYSAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEEVLLKSD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Dna binding protein
molecule keywords Trp operon repressor
publication title Flexibility of the DNA-binding domains of trp repressor.
pubmed doi rcsb
source organism Escherichia coli
total genus 35
structure length 104
sequence length 104
ec nomenclature
pdb deposition date 2007-02-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
R PF01371 Trp_repressor Trp repressor protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1270.10 Mainly Alpha Orthogonal Bundle Trp Operon Repressor; Chain A TrpR-like 2oz9R00
3G1CA 3KORA 3WRPA 1TROA 1JHGA 2OZ9R 2XDIA 1WRTR 1CO0A 3SSWN 1MI7R 1RCSA 1WRPR 3SSXN 1ZT9A 1TRRA 1WRSR 3FRWA
chains in the Genus database with same CATH superfamily
1OY5A 1JHGA 3IEFA 4YVGA 4YPYA 4YQCA 1UAKA 1WRTR 1UAMA 1MI7R 4YPZA 4YQ0A 1UALA 4YQDA 4YQ9A 4YQ7A 4YQ2A 4YQAA 1WRPR 1ZT9A 3FRWA 3AXZA 3G1CA 3KNUA 4YQOA 1TROA 2XDIA 4MCCA 4YQLA 4YVHA 4YQIA 4YQ8A 4YPXA 4YVIA 4YQ1A 3WRPA 4YQ5A 4YQSA 4IG6A 3KY7A 4YQ6A 4H3ZA 4MCBA 1RCSA 4YQQA 4YVJA 1P9PA 1UAJA 4YPWA 2OZ9R 4MCDA 4YQPA 1WRSR 3KORA 5D9FA 3SSXN 4YQ4A 4YQRA 4YQGA 4YQTA 3QUVA 4YQ3A 4H3YA 4YVKA 1CO0A 3SSWN 4YQKA 4YQBA 4YQJA 1TRRA 4YQNA
chains in the Genus database with same CATH topology
3G1CA 3KORA 3WRPA 1TROA 1JHGA 2OZ9R 2XDIA 1WRTR 1CO0A 3SSWN 1MI7R 1RCSA 1WRPR 3SSXN 1ZT9A 1TRRA 1WRSR 3FRWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3G1C A;  3KOR A;  3WRP A;  1TRO A;  1JHG A;  2OZ9 R;  2XDI A;  1WRT R;  1CO0 A;  3SSW N;  1MI7 R;  1RCS A;  1WRP R;  3SSX N;  1ZT9 A;  1TRR A;  1WRS R;  3FRW A; 
#chains in the Genus database with same CATH topology
 1OY5 A;  1JHG A;  3IEF A;  4YVG A;  4YPY A;  4YQC A;  1UAK A;  1WRT R;  1UAM A;  1MI7 R;  4YPZ A;  4YQ0 A;  1UAL A;  4YQD A;  4YQ9 A;  4YQ7 A;  4YQ2 A;  4YQA A;  1WRP R;  1ZT9 A;  3FRW A;  3AXZ A;  3G1C A;  3KNU A;  4YQO A;  1TRO A;  2XDI A;  4MCC A;  4YQL A;  4YVH A;  4YQI A;  4YQ8 A;  4YPX A;  4YVI A;  4YQ1 A;  3WRP A;  4YQ5 A;  4YQS A;  4IG6 A;  3KY7 A;  4YQ6 A;  4H3Z A;  4MCB A;  1RCS A;  4YQQ A;  4YVJ A;  1P9P A;  1UAJ A;  4YPW A;  2OZ9 R;  4MCD A;  4YQP A;  1WRS R;  3KOR A;  5D9F A;  3SSX N;  4YQ4 A;  4YQR A;  4YQG A;  4YQT A;  3QUV A;  4YQ3 A;  4H3Y A;  4YVK A;  1CO0 A;  3SSW N;  4YQK A;  4YQB A;  4YQJ A;  1TRR A;  4YQN A; 
#chains in the Genus database with same CATH homology
 3G1C A;  3KOR A;  3WRP A;  1TRO A;  1JHG A;  2OZ9 R;  2XDI A;  1WRT R;  1CO0 A;  3SSW N;  1MI7 R;  1RCS A;  1WRP R;  3SSX N;  1ZT9 A;  1TRR A;  1WRS R;  3FRW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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