2P6YA

X-ray structure of the protein q9km02_vibch from vibrio cholerae at the resolution 1.63 a. northeast structural genomics consortium target vcr80.
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
132
structure length
131
Chain Sequence
MIHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSVSTLQVSAPFEILSLSGTLTYQHCHLHIAVADAQGRVWGGHLLEGNLINTAELMIHHYPQHHFTREFDPNTGYSELVVSAA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords Hypothetical protein VCA0587
publication title X-ray structure of the protein Q9KM02_VIBCH from Vibrio cholerae at the resolution 1.63 A.
rcsb
source organism Vibrio cholerae
total genus 28
structure length 131
sequence length 132
ec nomenclature
pdb deposition date 2007-03-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03479 DUF296 Plants and Prokaryotes Conserved (PCC) domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1330.80 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30; Chain: A; Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 2p6yA00
2NMUA 3HTNA 4BT5A 1XV2A 2H6LA 2HX0A 4BT2A 2DT4A 3HWUA 4BT6A 4BT4A 2P6YA 4BT7A 4BT3A
chains in the Genus database with same CATH superfamily
3WJQA 5GINC 3E1YA 2QTPA 2PMPA 2KTUA 3VI6A 3TD4A 3CMEF 5EB1B 1QU9A 2F9ZC 3OBWA 4BT7A 3UT5B 5JH7B 1YIJF 3B6NA 4X20B 3HKCA 3NMUC 2Q1XA 4NUTA 3HKBB 5JQGA 1VK3A 5DCVA 1RA4A 1W41A 2CSLA 3WGKA 4ZHWA 2BO1A 4I55A 4O2AA 3Q8HA 4ZK7A 3CCUF 2HS0A 2LBXA 3CG6A 4TUYB 1QD9A 1U3PA 4X1YA 4NQ3A 1VQ5F 4BVRA 3JAWA 5ITZA 3V4DA 3IKFA 5LA6B 4G4YA 1NQ3A 5EIBC 3HWUA 4I50A 4BT4A 4KWEA 2R6R1 2CWJA 3FD6A 5HP8A 5EYPA 4G4WA 2HRUA 4ZOLB 5JVDB 1TVKB 4EB6A 1XRGA 2HVYD 1VQNF 2VAPA 3DC2A 5BMVB 5MN5A 3SIVA 3L7QA 4PWTA 2RHHA 3E20B 4X1KB 3J81M 1SDSA 3CB2A 5LYJA 3V7QA 3G6EF 1GX1A 1W42A 3KIZA 2UYNA 3M1XA 5FNVA 1VQVA 5GONA 1J7HA 3VTIC 4HNAA 4TV8A 3F0FA 3M4SA 3VO8A 1W55A 1M1KH 3M84A 5GIOC 2NMUA 5IJ0B 4ZI7B 4O4IA 3FFMA 3HKEA 3ZP4A 5J2TB 1TUBA 1FNKA 1S72F 3CCMF 1CLIA 3P4EA 1YJWF 3WXMB 4U3JB 2VGNA 1KNJA 2OTLF 1IV4A 4O4JA 3VYTC 3MQWA 3J80M 1YI2F 3NVKE 1FSZA 4G4VA 5C8YA 1VQMF 3WGLA 2Z01A 3R0PA 1R1MA 4O4LA 2B33A 3G4SF 2LCAA 3HKCB 1U40A 3ERNA 3IMPA 5JQGB 2V9YA 2G9IA 3CPWF 1CN7A 2KTVA 2N48A 1N8RH 2QI2A 4I55B 4O2AB 4ZHQA 4LNUA 4EI9A 1X7PA 3CMAF 5EIBD 5LOVA 4X1YB 1PF5A 3ESJA 4U39A 3JAWB 4LCKA 5ITZB 5EO3A 4RHAA 4I50B 2ALEA 2QA4F 3LWRC 2LBWA 3V7EA 5EYPB 3MCQA 2BTQB 2BTUA 1RQ2A 1X25A 3S0HA 4EB6B 2CHSA 1VQ8F 4NWOB 1VHAA 3LMEA 3RYFA 2CHTA 3CCVF 1Q81H 3C9TA 1VQ7F 1U3LA 1NMUB 2K1SA 3D54A 4C4WC 5LYJB 5G4VC 1ONIA 1YGYA 1KQSF 3V3TA 2HP3A 2HX0A 2UYNB 4O4HA 5FNVB 5GONB 2OTJF 5HY2A 3KJKA 4HNAB 1Z5WA 4TV8B 2HP0A 3JAKA 4BT5A 1U43A 2HRYA 5LXTA 4BW0B 1YQNA 1RLGA 2JNBA 2ZVZA 3D00A 4O4IB 3HKEB 1TUBB 3N4ZA 2FC3A 1KD1H 1Q82H 1K73H 1KC8H 5EB0A 3CCJF 3K0TA 5J2UA 3IEQA 1KNKA 1IV1A 3NVIB 4O4JB 3S0YA 4BT3A 3GYQA 3RA5A 3HAXD 4C81A 5HY4A 1OAPA 3RYHA 5C8YB 4E6EA 3BYQA 2BTOA 3CC4F 5IT9M 4O4LB 1W3EX 3TD5A 3E22A 3JASA 1JFFA 4BVSA 2I6DA 3JATA 2WALA 5CA1A 1M90H 2AMTA 2Z1EA 4DXDA 1QAHA 3ZOPA 2HS4A 1IV3A 4ZHQB 4LNUB 3KE1A 3CC2F 1H48A 1VQ6F 3MDOA 3SIUA 5LOVB 1K9MH 2Z1TA 4B62A 2FGYA 3T80A 1SA0A 3K2XA 1DT9A 1W581 2RHJA 3MBMA 3OW2F 1UFYA 2R751 5EWRA 1DBFA 3IEWA 4B46A 4YJ2A 3RYFB 3NK7A 5CA0A 3CPQA 3WGMA 1T0AA 3ZO8A 3OONA 3I3FA 3C9SA 2DT4A 4XCQA 2IQQA 4DRXA 1E7KA 1IV2A 3C9UA 4O4HB 3K12A 2HP0B 4RQOA 3VYUC 5MN6A 3OBYA 3JAKB 3JVHA 5HWEA 5LXTB 3HKDA 4ERHA 3VYSC 5KMGA 2RB9A 1JD1A 4YJ3A 1CK2A 4C8GA 3VOBA 5HY0A 1UI9A 5J2UB 3JARA 2GLZA 3CXCF 1QVFF 3J7AR 2AIFA 4O2BA 4BY9D 2ZF8A 1VQ9F 3RYHB 1W2BF 5CB4A 2UZHA 2HS3A 4EI7A 1X7OA 2RHLA 3RYCA 3E22B 2ZOVA 4C8IA 3JASB 2W8BC 1JFFB 3QUWA 4X1IA 5FLXM 1YHQF 3JATB 5CA1B 3N2GA 2YXZA 3LWVC 4IHJA 2AIZP 1COMA 4M8IA 1RQ7A 4R40B 4TZZA 1VQKF 5GANK 5KX5A 3CCEF 3PLAC 1JY8A 3WJRA 5HY1A 1SA0B 1W5BA 3JCMM 3CCSF 2OZBA 4TV9A 1YITF 3C9RA 3RYIA 2KGWA 1YJNF 1Z5VA 3KJJA 4YJ2B 5EZYA 5CA0B 4IIJA 4EI8A 3IR9A 3CD6F 3S02A 1VQOF 3QHDA 5GIPC 4DRXB 3WGNA 4BVQA 2L26A 1QVGF 4F6RA 4I4TA 4FFBA 5IJ9A 1Q7YH 3CYPB 3LWPC 3EORA 3HKDB 4ZHVA 5KMGB 2H8CA 5FJ4C 3S03A 5IYZA 2IAFA 3VIUA 3LWOC 5A2QM 1T0KB 4YJ3B 3CCQF 3RA6A 3JALA 4WBNA 2Q1YA 2KG4A 5HP7A 1FFXA 3D01A 2VGMA 2DYYA 2Z1FA 3JARB 1W57A 3PAFA 3N4YA 2PHNA 1W5FA 4BVTA 3NK6A 4B45A 3LDTA 2IG8A 5EAZA 4O2BB 5LP6A 2I6RA 1GZ0A 3F0GA 1W5AA 2VAWA 2ZODA 3C8LA 3RE3A 3VMFB 3ON1A 5CB4B 3ZP7A 3N2KA 2ZAUA 3HTNA 1X52A 4X3MA 3WPXA 1NJIH 3RYCB 4X1IB 4B5CA 2Z1UA 1XBIA 1FNJA 2ZVYA 3QTYA 2LBTA 1PXWA 3N2GB 3UT5A 5JH7A 4IHJB 1ODEA 3S0WA 1VQ4F 3JAMM 4X20A 1GO1A 3TD3A 3HKBA 4G4XA 2CVLA 5KX5B 2HQSC 5JCOA 1H7MA 2GZLA 3VCZA 1W40A 2EWCA 1Q86H 1VQPF 3G71F 1JJ2F 3DDNA 1GO0A 3AGKA 4TV9B 3LYBA 4C8EA 2UYKA 2VAMA 4TUYA 3RYIB 1OFUA 2CW4A 2QEXF 3HJWC 2H6LA 3F0DA 1VQLF 5B8FA 1IPAA 3P0ZA 3GHZA 5LA6A 3CYQA 5EZYB 3FD5A 4IIJB 3KHNA 5AVMA 1W59A 5LP6C 4ZOLA 3FBAA 5JVDA 3FPIA 3WPWA 1TVKA 2OTMA 3P10A 2GVIA 5BMVA 5HXUA 5G4UC 4ZHYB 5GAPK 4X1KA 1RLUA 4C82A 4F6RB 4I4TB 3CCRF 4BT2A 4FFBB 3S06A 5IJ9B 1SZQA 1JN1A 2P6YA 3O85A 2MQEA 3WJPA 3LWQC 3F6MA 3IKEA 3F0EA 1W5EA 3CCLF 3I56F 5HXZA 3WGJA 5IYZB 1YJ9F 4BT6A 1XHOA 2YYEA 3I7TA 3LFOA 3JALB 4WBNB 2RHOA 1FFXB 1Q8RA 1ZWZA 2UYJA 3GTZA 4G88A 2UYPA 2CZWA 2H8EA 5IJ0A 4ZI7A 1K8AH 3I55F 3K14A 5JCOC 5LP6B 5J2TA 2OHWA 4G4ZA 4X3LA 3VOAA 3U0OA 1VH8A 1XV2A 4U3JA 3CC7F 3MCAB 3ELCA 3N2KB 1H47A 5MN4A 2VXYA
chains in the Genus database with same CATH topology
2NMUA 3HTNA 4BT5A 1XV2A 2H6LA 2HX0A 4BT2A 2DT4A 3HWUA 4BT6A 4BT4A 2P6YA 4BT7A 4BT3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2NMU A;  3HTN A;  4BT5 A;  1XV2 A;  2H6L A;  2HX0 A;  4BT2 A;  2DT4 A;  3HWU A;  4BT6 A;  4BT4 A;  2P6Y A;  4BT7 A;  4BT3 A; 
#chains in the Genus database with same CATH topology
 3WJQ A;  5GIN C;  3E1Y A;  2QTP A;  2PMP A;  2KTU A;  3VI6 A;  3TD4 A;  3CME F;  5EB1 B;  1QU9 A;  2F9Z C;  3OBW A;  4BT7 A;  3UT5 B;  5JH7 B;  1YIJ F;  3B6N A;  4X20 B;  3HKC A;  3NMU C;  2Q1X A;  4NUT A;  3HKB B;  5JQG A;  1VK3 A;  5DCV A;  1RA4 A;  1W41 A;  2CSL A;  3WGK A;  4ZHW A;  2BO1 A;  4I55 A;  4O2A A;  3Q8H A;  4ZK7 A;  3CCU F;  2HS0 A;  2LBX A;  3CG6 A;  4TUY B;  1QD9 A;  1U3P A;  4X1Y A;  4NQ3 A;  1VQ5 F;  4BVR A;  3JAW A;  5ITZ A;  3V4D A;  3IKF A;  5LA6 B;  4G4Y A;  1NQ3 A;  5EIB C;  3HWU A;  4I50 A;  4BT4 A;  4KWE A;  2R6R 1;  2CWJ A;  3FD6 A;  5HP8 A;  5EYP A;  4G4W A;  2HRU A;  4ZOL B;  5JVD B;  1TVK B;  4EB6 A;  1XRG A;  2HVY D;  1VQN F;  2VAP A;  3DC2 A;  5BMV B;  5MN5 A;  3SIV A;  3L7Q A;  4PWT A;  2RHH A;  3E20 B;  4X1K B;  3J81 M;  1SDS A;  3CB2 A;  5LYJ A;  3V7Q A;  3G6E F;  1GX1 A;  1W42 A;  3KIZ A;  2UYN A;  3M1X A;  5FNV A;  1VQV A;  5GON A;  1J7H A;  3VTI C;  4HNA A;  4TV8 A;  3F0F A;  3M4S A;  3VO8 A;  1W55 A;  1M1K H;  3M84 A;  5GIO C;  2NMU A;  5IJ0 B;  4ZI7 B;  4O4I A;  3FFM A;  3HKE A;  3ZP4 A;  5J2T B;  1TUB A;  1FNK A;  1S72 F;  3CCM F;  1CLI A;  3P4E A;  1YJW F;  3WXM B;  4U3J B;  2VGN A;  1KNJ A;  2OTL F;  1IV4 A;  4O4J A;  3VYT C;  3MQW A;  3J80 M;  1YI2 F;  3NVK E;  1FSZ A;  4G4V A;  5C8Y A;  1VQM F;  3WGL A;  2Z01 A;  3R0P A;  1R1M A;  4O4L A;  2B33 A;  3G4S F;  2LCA A;  3HKC B;  1U40 A;  3ERN A;  3IMP A;  5JQG B;  2V9Y A;  2G9I A;  3CPW F;  1CN7 A;  2KTV A;  2N48 A;  1N8R H;  2QI2 A;  4I55 B;  4O2A B;  4ZHQ A;  4LNU A;  4EI9 A;  1X7P A;  3CMA F;  5EIB D;  5LOV A;  4X1Y B;  1PF5 A;  3ESJ A;  4U39 A;  3JAW B;  4LCK A;  5ITZ B;  5EO3 A;  4RHA A;  4I50 B;  2ALE A;  2QA4 F;  3LWR C;  2LBW A;  3V7E A;  5EYP B;  3MCQ A;  2BTQ B;  2BTU A;  1RQ2 A;  1X25 A;  3S0H A;  4EB6 B;  2CHS A;  1VQ8 F;  4NWO B;  1VHA A;  3LME A;  3RYF A;  2CHT A;  3CCV F;  1Q81 H;  3C9T A;  1VQ7 F;  1U3L A;  1NMU B;  2K1S A;  3D54 A;  4C4W C;  5LYJ B;  5G4V C;  1ONI A;  1YGY A;  1KQS F;  3V3T A;  2HP3 A;  2HX0 A;  2UYN B;  4O4H A;  5FNV B;  5GON B;  2OTJ F;  5HY2 A;  3KJK A;  4HNA B;  1Z5W A;  4TV8 B;  2HP0 A;  3JAK A;  4BT5 A;  1U43 A;  2HRY A;  5LXT A;  4BW0 B;  1YQN A;  1RLG A;  2JNB A;  2ZVZ A;  3D00 A;  4O4I B;  3HKE B;  1TUB B;  3N4Z A;  2FC3 A;  1KD1 H;  1Q82 H;  1K73 H;  1KC8 H;  5EB0 A;  3CCJ F;  3K0T A;  5J2U A;  3IEQ A;  1KNK A;  1IV1 A;  3NVI B;  4O4J B;  3S0Y A;  4BT3 A;  3GYQ A;  3RA5 A;  3HAX D;  4C81 A;  5HY4 A;  1OAP A;  3RYH A;  5C8Y B;  4E6E A;  3BYQ A;  2BTO A;  3CC4 F;  5IT9 M;  4O4L B;  1W3E X;  3TD5 A;  3E22 A;  3JAS A;  1JFF A;  4BVS A;  2I6D A;  3JAT A;  2WAL A;  5CA1 A;  1M90 H;  2AMT A;  2Z1E A;  4DXD A;  1QAH A;  3ZOP A;  2HS4 A;  1IV3 A;  4ZHQ B;  4LNU B;  3KE1 A;  3CC2 F;  1H48 A;  1VQ6 F;  3MDO A;  3SIU A;  5LOV B;  1K9M H;  2Z1T A;  4B62 A;  2FGY A;  3T80 A;  1SA0 A;  3K2X A;  1DT9 A;  1W58 1;  2RHJ A;  3MBM A;  3OW2 F;  1UFY A;  2R75 1;  5EWR A;  1DBF A;  3IEW A;  4B46 A;  4YJ2 A;  3RYF B;  3NK7 A;  5CA0 A;  3CPQ A;  3WGM A;  1T0A A;  3ZO8 A;  3OON A;  3I3F A;  3C9S A;  2DT4 A;  4XCQ A;  2IQQ A;  4DRX A;  1E7K A;  1IV2 A;  3C9U A;  4O4H B;  3K12 A;  2HP0 B;  4RQO A;  3VYU C;  5MN6 A;  3OBY A;  3JAK B;  3JVH A;  5HWE A;  5LXT B;  3HKD A;  4ERH A;  3VYS C;  5KMG A;  2RB9 A;  1JD1 A;  4YJ3 A;  1CK2 A;  4C8G A;  3VOB A;  5HY0 A;  1UI9 A;  5J2U B;  3JAR A;  2GLZ A;  3CXC F;  1QVF F;  3J7A R;  2AIF A;  4O2B A;  4BY9 D;  2ZF8 A;  1VQ9 F;  3RYH B;  1W2B F;  5CB4 A;  2UZH A;  2HS3 A;  4EI7 A;  1X7O A;  2RHL A;  3RYC A;  3E22 B;  2ZOV A;  4C8I A;  3JAS B;  2W8B C;  1JFF B;  3QUW A;  4X1I A;  5FLX M;  1YHQ F;  3JAT B;  5CA1 B;  3N2G A;  2YXZ A;  3LWV C;  4IHJ A;  2AIZ P;  1COM A;  4M8I A;  1RQ7 A;  4R40 B;  4TZZ A;  1VQK F;  5GAN K;  5KX5 A;  3CCE F;  3PLA C;  1JY8 A;  3WJR A;  5HY1 A;  1SA0 B;  1W5B A;  3JCM M;  3CCS F;  2OZB A;  4TV9 A;  1YIT F;  3C9R A;  3RYI A;  2KGW A;  1YJN F;  1Z5V A;  3KJJ A;  4YJ2 B;  5EZY A;  5CA0 B;  4IIJ A;  4EI8 A;  3IR9 A;  3CD6 F;  3S02 A;  1VQO F;  3QHD A;  5GIP C;  4DRX B;  3WGN A;  4BVQ A;  2L26 A;  1QVG F;  4F6R A;  4I4T A;  4FFB A;  5IJ9 A;  1Q7Y H;  3CYP B;  3LWP C;  3EOR A;  3HKD B;  4ZHV A;  5KMG B;  2H8C A;  5FJ4 C;  3S03 A;  5IYZ A;  2IAF A;  3VIU A;  3LWO C;  5A2Q M;  1T0K B;  4YJ3 B;  3CCQ F;  3RA6 A;  3JAL A;  4WBN A;  2Q1Y A;  2KG4 A;  5HP7 A;  1FFX A;  3D01 A;  2VGM A;  2DYY A;  2Z1F A;  3JAR B;  1W57 A;  3PAF A;  3N4Y A;  2PHN A;  1W5F A;  4BVT A;  3NK6 A;  4B45 A;  3LDT A;  2IG8 A;  5EAZ A;  4O2B B;  5LP6 A;  2I6R A;  1GZ0 A;  3F0G A;  1W5A A;  2VAW A;  2ZOD A;  3C8L A;  3RE3 A;  3VMF B;  3ON1 A;  5CB4 B;  3ZP7 A;  3N2K A;  2ZAU A;  3HTN A;  1X52 A;  4X3M A;  3WPX A;  1NJI H;  3RYC B;  4X1I B;  4B5C A;  2Z1U A;  1XBI A;  1FNJ A;  2ZVY A;  3QTY A;  2LBT A;  1PXW A;  3N2G B;  3UT5 A;  5JH7 A;  4IHJ B;  1ODE A;  3S0W A;  1VQ4 F;  3JAM M;  4X20 A;  1GO1 A;  3TD3 A;  3HKB A;  4G4X A;  2CVL A;  5KX5 B;  2HQS C;  5JCO A;  1H7M A;  2GZL A;  3VCZ A;  1W40 A;  2EWC A;  1Q86 H;  1VQP F;  3G71 F;  1JJ2 F;  3DDN A;  1GO0 A;  3AGK A;  4TV9 B;  3LYB A;  4C8E A;  2UYK A;  2VAM A;  4TUY A;  3RYI B;  1OFU A;  2CW4 A;  2QEX F;  3HJW C;  2H6L A;  3F0D A;  1VQL F;  5B8F A;  1IPA A;  3P0Z A;  3GHZ A;  5LA6 A;  3CYQ A;  5EZY B;  3FD5 A;  4IIJ B;  3KHN A;  5AVM A;  1W59 A;  5LP6 C;  4ZOL A;  3FBA A;  5JVD A;  3FPI A;  3WPW A;  1TVK A;  2OTM A;  3P10 A;  2GVI A;  5BMV A;  5HXU A;  5G4U C;  4ZHY B;  5GAP K;  4X1K A;  1RLU A;  4C82 A;  4F6R B;  4I4T B;  3CCR F;  4BT2 A;  4FFB B;  3S06 A;  5IJ9 B;  1SZQ A;  1JN1 A;  2P6Y A;  3O85 A;  2MQE A;  3WJP A;  3LWQ C;  3F6M A;  3IKE A;  3F0E A;  1W5E A;  3CCL F;  3I56 F;  5HXZ A;  3WGJ A;  5IYZ B;  1YJ9 F;  4BT6 A;  1XHO A;  2YYE A;  3I7T A;  3LFO A;  3JAL B;  4WBN B;  2RHO A;  1FFX B;  1Q8R A;  1ZWZ A;  2UYJ A;  3GTZ A;  4G88 A;  2UYP A;  2CZW A;  2H8E A;  5IJ0 A;  4ZI7 A;  1K8A H;  3I55 F;  3K14 A;  5JCO C;  5LP6 B;  5J2T A;  2OHW A;  4G4Z A;  4X3L A;  3VOA A;  3U0O A;  1VH8 A;  1XV2 A;  4U3J A;  3CC7 F;  3MCA B;  3ELC A;  3N2K B;  1H47 A;  5MN4 A;  2VXY A; 
#chains in the Genus database with same CATH homology
 2NMU A;  3HTN A;  4BT5 A;  1XV2 A;  2H6L A;  2HX0 A;  4BT2 A;  2DT4 A;  3HWU A;  4BT6 A;  4BT4 A;  2P6Y A;  4BT7 A;  4BT3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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