2PCGA

Crystal structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 86
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
86
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSMNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Probable diphthine synthase
publication title Crystal structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
total genus 86
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-03-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2pcgA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2pcgA01
2EGSA 2BB3A 2EH2A 2QBUA 2DXVA 2Z6RA 2P6DA 2EGLA 3HH1A 2E8RA 2PB4A 2EH4A 2OWFA 2NPNA 3ND1A 2DV5A 2E08A 2P5CA 2HR8A 2EMRA 2EN5A 2E17A 2P2XA 2ENIA 3NEIA 1CBFA 2P6IA 4E16A 2E0NA 2PCIA 2YBQA 2HUXA 2P9DA 2DEKA 2EL3A 2PCHA 2E8QA 2E8SA 2DSIA 2DXWA 2OWKA 3NDCA 2DV4A 2EKAA 2HUTA 1WDEA 2DXXA 3NUTA 2EL0A 2DSHA 2EK4A 2ED5A 2PB6A 2E0KA 2EK2A 2PCKA 2OWGA 2E15A 2EMUA 2YBOA 2DV3A 2EJJA 2ZVBA 1S4DA 2EEQA 2E16A 2HUQA 2E7RA 2E4NA 1VCEA 2PB5A 3FFYA 5HW4A 2OWUA 3FQ6A 2EK7A 2PCAA 3KWPA 2DV7A 2DSGA 2EGBA 2ELEA 2P6KA 2ED3A 2P6LA 2P5FA 2E4RA 2EHCA 1WNGA 1VA0A 1VHVA 2EJKA 2E07A 2EK3A 2EHLA 2HUVA 2PCGA 1WYZA 1VE2A 1PJTA 1V9AA 1PJSA 2CBFA 2OWVA 2PCMA 3I4TA 2EJZA 2ZVCA 2EH5A 2E8HA 2ELDA 1PJQA 2EL2A 2EL1A
chains in the Genus database with same CATH superfamily
2EGSA 2BB3A 2EH2A 2QBUA 4H4CA 2DXVA 2Z6RA 2P6DA 2EGLA 3UTDA 4N7BA 3ZGNA 3HH1A 2E8RA 2PB4A 2EH4A 2OWFA 2NPNA 3ND1A 2DV5A 2E08A 2P5CA 2HR8A 2EMRA 2EN5A 2E17A 2P2XA 2ENIA 3NEIA 1CBFA 2P6IA 4E16A 2E0NA 2PCIA 2YBQA 3KE9A 2HUXA 4MV5A 2P9DA 2DEKA 3URKA 3KELA 2EL3A 2PCHA 2E8QA 2E8SA 2DSIA 3ZGLA 2DXWA 2OWKA 3NDCA 2DV4A 2EKAA 2HUTA 1WDEA 2DXXA 3NUTA 2EL0A 2DSHA 2EK4A 2ED5A 2PB6A 2E0KA 2EK2A 2PCKA 2OWGA 2E15A 2EMUA 2YBOA 2DV3A 2EJJA 2ZVBA 4MV0A 1S4DA 2EEQA 2E16A 2HUQA 2E7RA 4MUYA 2E4NA 1VCEA 2PB5A 3FFYA 5HW4A 3UTCA 2OWUA 3KEMA 4EB3A 3FQ6A 3UV7A 2EK7A 3SZLA 2PCAA 3KWPA 2DV7A 2DSGA 3T0FA 2EGBA 2ELEA 4H4DA 2P6KA 3KE8A 3SZOA 2ED3A 2P6LA 2P5FA 2E4RA 2EHCA 1WNGA 1VA0A 3T0GA 2KYYA 3F7TA 1VHVA 4MUXA 2EJKA 2E07A 2EK3A 2EHLA 3UV3A 2HUVA 2PCGA 1WYZA 1VE2A 1PJTA 1V9AA 1PJSA 2CBFA 3SZUA 2OWVA 2PCMA 3I4TA 4H4EA 3TIXB 2EJZA 3LMMA 3UV6A 3DNFA 2ZVCA 2EH5A 2E8HA 3UWMA 2ELDA 1PJQA 2EL2A 2EL1A 3KEFA
chains in the Genus database with same CATH topology
2EGSA 2BB3A 2EH2A 2QBUA 4H4CA 2DXVA 2Z6RA 2P6DA 2EGLA 3UTDA 4N7BA 3ZGNA 3HH1A 2E8RA 2PB4A 2EH4A 2OWFA 2NPNA 3ND1A 2DV5A 2E08A 2P5CA 2HR8A 2EMRA 2EN5A 2E17A 2P2XA 2ENIA 3NEIA 1CBFA 2P6IA 4E16A 2E0NA 2PCIA 2YBQA 3KE9A 2HUXA 4MV5A 2P9DA 2DEKA 3URKA 3KELA 2EL3A 2PCHA 2E8QA 2E8SA 2DSIA 3ZGLA 2DXWA 2OWKA 3NDCA 2DV4A 2EKAA 2HUTA 1WDEA 2DXXA 3NUTA 2EL0A 2DSHA 2EK4A 2ED5A 2PB6A 2E0KA 2EK2A 2PCKA 2OWGA 2E15A 2EMUA 2YBOA 2DV3A 2EJJA 2ZVBA 4MV0A 1S4DA 2EEQA 2E16A 2HUQA 2E7RA 4MUYA 2E4NA 1VCEA 2PB5A 3FFYA 5HW4A 3UTCA 2OWUA 3KEMA 4EB3A 3FQ6A 3UV7A 2EK7A 3SZLA 2PCAA 3KWPA 2DV7A 2DSGA 3T0FA 2EGBA 2ELEA 4H4DA 2P6KA 3KE8A 3SZOA 2ED3A 2P6LA 2P5FA 2E4RA 2EHCA 1WNGA 1VA0A 3T0GA 2KYYA 3F7TA 1VHVA 4MUXA 2EJKA 2E07A 2EK3A 2EHLA 3UV3A 2HUVA 2PCGA 1WYZA 1VE2A 1PJTA 1V9AA 1PJSA 2CBFA 3SZUA 2OWVA 2PCMA 3I4TA 4H4EA 3TIXB 2EJZA 3LMMA 3UV6A 3DNFA 2ZVCA 2EH5A 2E8HA 3UWMA 2ELDA 1PJQA 2EL2A 2EL1A 3KEFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2EGS A;  2BB3 A;  2EH2 A;  2QBU A;  2DXV A;  2Z6R A;  2P6D A;  2EGL A;  3HH1 A;  2E8R A;  2PB4 A;  2EH4 A;  2OWF A;  2NPN A;  3ND1 A;  2DV5 A;  2E08 A;  2P5C A;  2HR8 A;  2EMR A;  2EN5 A;  2E17 A;  2P2X A;  2ENI A;  3NEI A;  1CBF A;  2P6I A;  4E16 A;  2E0N A;  2PCI A;  2YBQ A;  2HUX A;  2P9D A;  2DEK A;  2EL3 A;  2PCH A;  2E8Q A;  2E8S A;  2DSI A;  2DXW A;  2OWK A;  3NDC A;  2DV4 A;  2EKA A;  2HUT A;  1WDE A;  2DXX A;  3NUT A;  2EL0 A;  2DSH A;  2EK4 A;  2ED5 A;  2PB6 A;  2E0K A;  2EK2 A;  2PCK A;  2OWG A;  2E15 A;  2EMU A;  2YBO A;  2DV3 A;  2EJJ A;  2ZVB A;  1S4D A;  2EEQ A;  2E16 A;  2HUQ A;  2E7R A;  2E4N A;  1VCE A;  2PB5 A;  3FFY A;  5HW4 A;  2OWU A;  3FQ6 A;  2EK7 A;  2PCA A;  3KWP A;  2DV7 A;  2DSG A;  2EGB A;  2ELE A;  2P6K A;  2ED3 A;  2P6L A;  2P5F A;  2E4R A;  2EHC A;  1WNG A;  1VA0 A;  1VHV A;  2EJK A;  2E07 A;  2EK3 A;  2EHL A;  2HUV A;  2PCG A;  1WYZ A;  1VE2 A;  1PJT A;  1V9A A;  1PJS A;  2CBF A;  2OWV A;  2PCM A;  3I4T A;  2EJZ A;  2ZVC A;  2EH5 A;  2E8H A;  2ELD A;  1PJQ A;  2EL2 A;  2EL1 A; 
#chains in the Genus database with same CATH topology
 2EGS A;  2BB3 A;  2EH2 A;  2QBU A;  4H4C A;  2DXV A;  2Z6R A;  2P6D A;  2EGL A;  3UTD A;  4N7B A;  3ZGN A;  3HH1 A;  2E8R A;  2PB4 A;  2EH4 A;  2OWF A;  2NPN A;  3ND1 A;  2DV5 A;  2E08 A;  2P5C A;  2HR8 A;  2EMR A;  2EN5 A;  2E17 A;  2P2X A;  2ENI A;  3NEI A;  1CBF A;  2P6I A;  4E16 A;  2E0N A;  2PCI A;  2YBQ A;  3KE9 A;  2HUX A;  4MV5 A;  2P9D A;  2DEK A;  3URK A;  3KEL A;  2EL3 A;  2PCH A;  2E8Q A;  2E8S A;  2DSI A;  3ZGL A;  2DXW A;  2OWK A;  3NDC A;  2DV4 A;  2EKA A;  2HUT A;  1WDE A;  2DXX A;  3NUT A;  2EL0 A;  2DSH A;  2EK4 A;  2ED5 A;  2PB6 A;  2E0K A;  2EK2 A;  2PCK A;  2OWG A;  2E15 A;  2EMU A;  2YBO A;  2DV3 A;  2EJJ A;  2ZVB A;  4MV0 A;  1S4D A;  2EEQ A;  2E16 A;  2HUQ A;  2E7R A;  4MUY A;  2E4N A;  1VCE A;  2PB5 A;  3FFY A;  5HW4 A;  3UTC A;  2OWU A;  3KEM A;  4EB3 A;  3FQ6 A;  3UV7 A;  2EK7 A;  3SZL A;  2PCA A;  3KWP A;  2DV7 A;  2DSG A;  3T0F A;  2EGB A;  2ELE A;  4H4D A;  2P6K A;  3KE8 A;  3SZO A;  2ED3 A;  2P6L A;  2P5F A;  2E4R A;  2EHC A;  1WNG A;  1VA0 A;  3T0G A;  2KYY A;  3F7T A;  1VHV A;  4MUX A;  2EJK A;  2E07 A;  2EK3 A;  2EHL A;  3UV3 A;  2HUV A;  2PCG A;  1WYZ A;  1VE2 A;  1PJT A;  1V9A A;  1PJS A;  2CBF A;  3SZU A;  2OWV A;  2PCM A;  3I4T A;  4H4E A;  3TIX B;  2EJZ A;  3LMM A;  3UV6 A;  3DNF A;  2ZVC A;  2EH5 A;  2E8H A;  3UWM A;  2ELD A;  1PJQ A;  2EL2 A;  2EL1 A;  3KEF A; 
#chains in the Genus database with same CATH homology
 2EGS A;  2BB3 A;  2EH2 A;  2QBU A;  4H4C A;  2DXV A;  2Z6R A;  2P6D A;  2EGL A;  3UTD A;  4N7B A;  3ZGN A;  3HH1 A;  2E8R A;  2PB4 A;  2EH4 A;  2OWF A;  2NPN A;  3ND1 A;  2DV5 A;  2E08 A;  2P5C A;  2HR8 A;  2EMR A;  2EN5 A;  2E17 A;  2P2X A;  2ENI A;  3NEI A;  1CBF A;  2P6I A;  4E16 A;  2E0N A;  2PCI A;  2YBQ A;  3KE9 A;  2HUX A;  4MV5 A;  2P9D A;  2DEK A;  3URK A;  3KEL A;  2EL3 A;  2PCH A;  2E8Q A;  2E8S A;  2DSI A;  3ZGL A;  2DXW A;  2OWK A;  3NDC A;  2DV4 A;  2EKA A;  2HUT A;  1WDE A;  2DXX A;  3NUT A;  2EL0 A;  2DSH A;  2EK4 A;  2ED5 A;  2PB6 A;  2E0K A;  2EK2 A;  2PCK A;  2OWG A;  2E15 A;  2EMU A;  2YBO A;  2DV3 A;  2EJJ A;  2ZVB A;  4MV0 A;  1S4D A;  2EEQ A;  2E16 A;  2HUQ A;  2E7R A;  4MUY A;  2E4N A;  1VCE A;  2PB5 A;  3FFY A;  5HW4 A;  3UTC A;  2OWU A;  3KEM A;  4EB3 A;  3FQ6 A;  3UV7 A;  2EK7 A;  3SZL A;  2PCA A;  3KWP A;  2DV7 A;  2DSG A;  3T0F A;  2EGB A;  2ELE A;  4H4D A;  2P6K A;  3KE8 A;  3SZO A;  2ED3 A;  2P6L A;  2P5F A;  2E4R A;  2EHC A;  1WNG A;  1VA0 A;  3T0G A;  2KYY A;  3F7T A;  1VHV A;  4MUX A;  2EJK A;  2E07 A;  2EK3 A;  2EHL A;  3UV3 A;  2HUV A;  2PCG A;  1WYZ A;  1VE2 A;  1PJT A;  1V9A A;  1PJS A;  2CBF A;  3SZU A;  2OWV A;  2PCM A;  3I4T A;  4H4E A;  3TIX B;  2EJZ A;  3LMM A;  3UV6 A;  3DNF A;  2ZVC A;  2EH5 A;  2E8H A;  3UWM A;  2ELD A;  1PJQ A;  2EL2 A;  2EL1 A;  3KEF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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