2PEJA

Crystal structure of rbcx point mutant y17a/y20l
Total Genus 43
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
109
structure length
109
Chain Sequence
FKKVAKETAITLQSALTLQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLENKELVLRILTVRENLAEGVLEFLPEMVLSQIKQSNGNHRRSLLERLTQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Chaperone
molecule keywords ORF134
publication title Structure and Function of RbcX, an Assembly Chaperone for Hexadecameric Rubisco.
pubmed doi rcsb
source organism Synechococcus sp.
total genus 43
structure length 109
sequence length 109
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2007-04-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02341 RcbX RbcX protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.210 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 2pejA00
2PEQA 2PEOA 2PEKA 5BS2A 2PEMA 2PEJA 2Z44A 2PEIA 3Q20A 4GR2A 3RG6C 5BS1A 3HYBA 4GR6A 2Z46A 2PENA 2PY8A 2Z45A
chains in the Genus database with same CATH superfamily
1KQSO 1MZ8A 1AF8A 1BXIA 1GXHA 5F2OA 1HQBA 1KLPA 1DNYA 3EJBA 1ACPA 2GYKA 2KGCA 3CPWO 1YJNP 1IUQA 1L0IA 5F2KA 2WPTA 2BUOA 3G29A 2MVUA 3HZQA 2ROQA 3RG6C 3GZMA 3NTEA 2CQ8A 3GZLA 2EFJA 5EW5E 1YHQP 2KG8A 1D1DA 3CCLP 2EG5A 2FQ0A 4PH0A 1VKUA 1N8RQ 5KP8B 2BHVA 2CG5B 2KOPA 4PH1A 2VLQA 2MR7A 3OW2O 1VQNP 2KW2A 5F2NA 4F37A 2KR5A 3G28A 1HY8A 3G0VA 2Z46A 4U0FA 2JBGA 2LPKA 3H47A 1EIAA 1A8OA 2ERHA 2LMLA 3G21A 3E2DA 1Q86Q 4U0DA 1RO2A 1QRJA 4U0BA 2KG9A 2KG6A 4U0EA 2M8NA 1KD1Q 4IZ6A 2M8PA 1K8AQ 3M1MA 3H0DA 1YI2P 2VSQA 1K9MQ 3RG2A 1M74A 1OR5A 1QVFO 4WYMA 2M5RA 2EHSA 1VQ4P 2JU2A 5CZDB 2XT1A 1A43A 3CC4P 3DS0A 2KGEA 1L0HA 3CC7P 2LIUA 2VLNA 2K5XA 2GZJA 4BPHA 2FVEA 2CGQA 2JB0A 1CEIA 2LOLA 2X2BA 3DS3A 4IPYA 4DG9A 3CCUP 1VQ9P 1GPJA 2DGYA 2L6EA 3U43A 4QKOA 3CCJP 2KGDA 2JO0A 5EJDA 5KP6B 2PEOA 1YIJP 3G1GA 4GR2A 2KOOA 2KOSA 3CD6P 2PY8A 1VQ7P 2LF4A 2PNGA 4PXHB 2N5IA 2NO8A 5JPAA 1Z6MA 2EIAA 5HGNA 1NJIQ 2CWOA 2PEQA 2EHTA 3CCVP 2VLPA 5DCKA 3CMEP 2PEJA 4UHPB 2MR8A 4U0AA 2N5HA 2GDXA 1M90Q 2KODA 4COPA 4COCA 1AYIA 1VQ8P 2XXMA 3DS2A 1VQOP 1DV5A 2GZFA 3DTJA 2L9FA 1ZNVA 2MF4A 3WBHA 2GZIA 3I56P 3GJNA 2FHSC 2QNWA 1BAJA 2KORA 1AUMA 7CEIA 2FQ1A 1T8KA 3VRLC 1M1KQ 3LMOA 3CXCO 2K0XA 2L0QA 1JJ2O 2GDWA 3H4EA 2N6ZA 4M0IA 1VQMP 1VQ6P 2Z44A 4H2WC 2M8LA 1Q7YQ 1YJWP 2LL8A 2KOQA 2AFEA 2K92A 2XZ1C 1QVGO 1UJZA 3B4QA 2JQ4A 4GR6A 3NY7B 3CC2P 2PEKA 2MD9A 2FVFA 3G4SP 5HGLA 2N98A 2MVVA 2JU1A 2P9XA 5HVCA 3I55P 1VQPP 1S72P 3EJEA 1K30A 1W2BO 3G1IA 4PWVB 1NQ4A 1M6NA 2XV6A 4QNBA 1VQLP 2PENA 4BPGA 2PEMA 2L22A 2N50A 2VLOA 1E0HA 3DS4A 3DPHA 2K0DX 1IMPA 2XZ0D 3EJDA 1RO0A 2LTEA 3DS5A 3G6EP 2OARA 2E1MA 1GXGA 1FR2A 5HV8A 2GDYA 3Q20A 4U0CA 2FVAA 2FAEA 3CCSP 1VQ5P 4CA3A 2QA4P 3DS1A 1EOQA 2CNRA 5BS1A 3G71P 3CCMP 5I4TG 1Q81Q 4H2XC 2AVAA 2MY5A 4NEOA 2FQ2A 1VHNA 1X3OA 3HYBA 4HKGA 1YJ9P 2JYLA 2DNWA 1Q82Q 1K73Q 3CCQP 2FACA 2AFDA 1IMQA 4XRQA 4R0MA 2KWLA 2OTJP 2FADA 1ZMBA 4BPFA 3MGEA 4XFXA 1RNIA 1M6EX 5KP7B 4XROA 3B5IA 2N6YA 4XFYA 5BS2A 2PEIA 2K94A 2JYGA 4H2YC 2K93A 1KC8Q 3CE7A 2JAZA 4XFZA 5HGMA 5HGOA 3CMAP 2K0YA 4MRTC 1UNKA 2KGAA 1YITP 1E6JP 3CCEP 3CCRP 3G26A 2LKIA 3GKLC 2K2QA 2L4BA 2OTLP 1EMVA 2LIWA 2QEXP 2ONTA 2JGPA 2GZEA 1VQKP 3P05A 2AF8A 2GZGA 1F80D 3LRYA 2Z45A
chains in the Genus database with same CATH topology
4WYMA 1KQSO 1VQOP 1RO0A 3DS5A 1VQ4P 3G6EP 3DTJA 5F2OA 2OARA 2E1MA 2XT1A 1A43A 3WBHA 3CC4P 3DS0A 3CC7P 3Q20A 4U0CA 3I56P 1YJNP 3CPWO 1VQ5P 3CCSP 1IUQA 2QA4P 5F2KA 3DS1A 1EOQA 1BAJA 2BUOA 3G29A 5BS1A 3G71P 1AUMA 3CCMP 3HZQA 5I4TG 1Q81Q 3RG6C 3NTEA 3VRLC 1M1KQ 3CXCO 2EFJA 1YHQP 1JJ2O 3HYBA 1YJ9P 3DS3A 4IPYA 3CCUP 2JYLA 1Q82Q 1VQ9P 2DGYA 1K73Q 1D1DA 3H4EA 4M0IA 2EG5A 3CCQP 2L6EA 1VQMP 4PH0A 3CCLP 3CCJP 1VQ6P 2Z44A 1N8RQ 2Z45A 4XRQA 2JO0A 2PEOA 2M8LA 1YIJP 2OTJP 3G1GA 1ZMBA 4GR2A 1Q7YQ 3MGEA 4XFXA 1YJWP 2BHVA 1RNIA 4PH1A 1M6EX 1QVGO 4XROA 3CD6P 3B5IA 2PY8A 4XFYA 1VQ7P 5BS2A 2PEIA 3OW2O 2JYGA 4GR6A 1KC8Q 2LF4A 4XFZA 3CC2P 1VQNP 5F2NA 2PEKA 3G28A 5HGMA 5HGOA 3G0VA 2Z46A 3CMAP 4U0FA 5JPAA 3G4SP 2EIAA 5HGLA 5HGNA 3H47A 1EIAA 1A8OA 1NJIQ 3G21A 3E2DA 1Q86Q 4U0DA 1RO2A 1QRJA 2CWOA 2PEQA 4U0BA 1YITP 1E6JP 3CCEP 3CCVP 3CCRP 2P9XA 3G26A 5DCKA 1VQPP 3I55P 4U0EA 3CMEP 2M8NA 2PEJA 1S72P 1KD1Q 2OTLP 1K30A 2QEXP 1W2BO 3G1IA 2ONTA 4U0AA 2M8PA 1K8AQ 3M1MA 3H0DA 1M90Q 1YI2P 2KODA 1M6NA 4COPA 1K9MQ 2XV6A 4QNBA 1VQLP 2PENA 1VQKP 3P05A 1M74A 4COCA 3LRYA 2PEMA 1QVFO 1VQ8P 2XXMA 3DS4A 3DS2A 3DPHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PEQ A;  2PEO A;  2PEK A;  5BS2 A;  2PEM A;  2PEJ A;  2Z44 A;  2PEI A;  3Q20 A;  4GR2 A;  3RG6 C;  5BS1 A;  3HYB A;  4GR6 A;  2Z46 A;  2PEN A;  2PY8 A;  2Z45 A; 
#chains in the Genus database with same CATH topology
 1KQS O;  1MZ8 A;  1AF8 A;  1BXI A;  1GXH A;  5F2O A;  1HQB A;  1KLP A;  1DNY A;  3EJB A;  1ACP A;  2GYK A;  2KGC A;  3CPW O;  1YJN P;  1IUQ A;  1L0I A;  5F2K A;  2WPT A;  2BUO A;  3G29 A;  2MVU A;  3HZQ A;  2ROQ A;  3RG6 C;  3GZM A;  3NTE A;  2CQ8 A;  3GZL A;  2EFJ A;  5EW5 E;  1YHQ P;  2KG8 A;  1D1D A;  3CCL P;  2EG5 A;  2FQ0 A;  4PH0 A;  1VKU A;  1N8R Q;  5KP8 B;  2BHV A;  2CG5 B;  2KOP A;  4PH1 A;  2VLQ A;  2MR7 A;  3OW2 O;  1VQN P;  2KW2 A;  5F2N A;  4F37 A;  2KR5 A;  3G28 A;  1HY8 A;  3G0V A;  2Z46 A;  4U0F A;  2JBG A;  2LPK A;  3H47 A;  1EIA A;  1A8O A;  2ERH A;  2LML A;  3G21 A;  3E2D A;  1Q86 Q;  4U0D A;  1RO2 A;  1QRJ A;  4U0B A;  2KG9 A;  2KG6 A;  4U0E A;  2M8N A;  1KD1 Q;  4IZ6 A;  2M8P A;  1K8A Q;  3M1M A;  3H0D A;  1YI2 P;  2VSQ A;  1K9M Q;  3RG2 A;  1M74 A;  1OR5 A;  1QVF O;  4WYM A;  2M5R A;  2EHS A;  1VQ4 P;  2JU2 A;  5CZD B;  2XT1 A;  1A43 A;  3CC4 P;  3DS0 A;  2KGE A;  1L0H A;  3CC7 P;  2LIU A;  2VLN A;  2K5X A;  2GZJ A;  4BPH A;  2FVE A;  2CGQ A;  2JB0 A;  1CEI A;  2LOL A;  2X2B A;  3DS3 A;  4IPY A;  4DG9 A;  3CCU P;  1VQ9 P;  1GPJ A;  2DGY A;  2L6E A;  3U43 A;  4QKO A;  3CCJ P;  2KGD A;  2JO0 A;  5EJD A;  5KP6 B;  2PEO A;  1YIJ P;  3G1G A;  4GR2 A;  2KOO A;  2KOS A;  3CD6 P;  2PY8 A;  1VQ7 P;  2LF4 A;  2PNG A;  4PXH B;  2N5I A;  2NO8 A;  5JPA A;  1Z6M A;  2EIA A;  5HGN A;  1NJI Q;  2CWO A;  2PEQ A;  2EHT A;  3CCV P;  2VLP A;  5DCK A;  3CME P;  2PEJ A;  4UHP B;  2MR8 A;  4U0A A;  2N5H A;  2GDX A;  1M90 Q;  2KOD A;  4COP A;  4COC A;  1AYI A;  1VQ8 P;  2XXM A;  3DS2 A;  1VQO P;  1DV5 A;  2GZF A;  3DTJ A;  2L9F A;  1ZNV A;  2MF4 A;  3WBH A;  2GZI A;  3I56 P;  3GJN A;  2FHS C;  2QNW A;  1BAJ A;  2KOR A;  1AUM A;  7CEI A;  2FQ1 A;  1T8K A;  3VRL C;  1M1K Q;  3LMO A;  3CXC O;  2K0X A;  2L0Q A;  1JJ2 O;  2GDW A;  3H4E A;  2N6Z A;  4M0I A;  1VQM P;  1VQ6 P;  2Z44 A;  4H2W C;  2M8L A;  1Q7Y Q;  1YJW P;  2LL8 A;  2KOQ A;  2AFE A;  2K92 A;  2XZ1 C;  1QVG O;  1UJZ A;  3B4Q A;  2JQ4 A;  4GR6 A;  3NY7 B;  3CC2 P;  2PEK A;  2MD9 A;  2FVF A;  3G4S P;  5HGL A;  2N98 A;  2MVV A;  2JU1 A;  2P9X A;  5HVC A;  3I55 P;  1VQP P;  1S72 P;  3EJE A;  1K30 A;  1W2B O;  3G1I A;  4PWV B;  1NQ4 A;  1M6N A;  2XV6 A;  4QNB A;  1VQL P;  2PEN A;  4BPG A;  2PEM A;  2L22 A;  2N50 A;  2VLO A;  1E0H A;  3DS4 A;  3DPH A;  2K0D X;  1IMP A;  2XZ0 D;  3EJD A;  1RO0 A;  2LTE A;  3DS5 A;  3G6E P;  2OAR A;  2E1M A;  1GXG A;  1FR2 A;  5HV8 A;  2GDY A;  3Q20 A;  4U0C A;  2FVA A;  2FAE A;  3CCS P;  1VQ5 P;  4CA3 A;  2QA4 P;  3DS1 A;  1EOQ A;  2CNR A;  5BS1 A;  3G71 P;  3CCM P;  5I4T G;  1Q81 Q;  4H2X C;  2AVA A;  2MY5 A;  4NEO A;  2FQ2 A;  1VHN A;  1X3O A;  3HYB A;  4HKG A;  1YJ9 P;  2JYL A;  2DNW A;  1Q82 Q;  1K73 Q;  3CCQ P;  2FAC A;  2AFD A;  1IMQ A;  4XRQ A;  4R0M A;  2KWL A;  2OTJ P;  2FAD A;  1ZMB A;  4BPF A;  3MGE A;  4XFX A;  1RNI A;  1M6E X;  5KP7 B;  4XRO A;  3B5I A;  2N6Y A;  4XFY A;  5BS2 A;  2PEI A;  2K94 A;  2JYG A;  4H2Y C;  2K93 A;  1KC8 Q;  3CE7 A;  2JAZ A;  4XFZ A;  5HGM A;  5HGO A;  3CMA P;  2K0Y A;  4MRT C;  1UNK A;  2KGA A;  1YIT P;  1E6J P;  3CCE P;  3CCR P;  3G26 A;  2LKI A;  3GKL C;  2K2Q A;  2L4B A;  2OTL P;  1EMV A;  2LIW A;  2QEX P;  2ONT A;  2JGP A;  2GZE A;  1VQK P;  3P05 A;  2AF8 A;  2GZG A;  1F80 D;  3LRY A;  2Z45 A; 
#chains in the Genus database with same CATH homology
 4WYM A;  1KQS O;  1VQO P;  1RO0 A;  3DS5 A;  1VQ4 P;  3G6E P;  3DTJ A;  5F2O A;  2OAR A;  2E1M A;  2XT1 A;  1A43 A;  3WBH A;  3CC4 P;  3DS0 A;  3CC7 P;  3Q20 A;  4U0C A;  3I56 P;  1YJN P;  3CPW O;  1VQ5 P;  3CCS P;  1IUQ A;  2QA4 P;  5F2K A;  3DS1 A;  1EOQ A;  1BAJ A;  2BUO A;  3G29 A;  5BS1 A;  3G71 P;  1AUM A;  3CCM P;  3HZQ A;  5I4T G;  1Q81 Q;  3RG6 C;  3NTE A;  3VRL C;  1M1K Q;  3CXC O;  2EFJ A;  1YHQ P;  1JJ2 O;  3HYB A;  1YJ9 P;  3DS3 A;  4IPY A;  3CCU P;  2JYL A;  1Q82 Q;  1VQ9 P;  2DGY A;  1K73 Q;  1D1D A;  3H4E A;  4M0I A;  2EG5 A;  3CCQ P;  2L6E A;  1VQM P;  4PH0 A;  3CCL P;  3CCJ P;  1VQ6 P;  2Z44 A;  1N8R Q;  2Z45 A;  4XRQ A;  2JO0 A;  2PEO A;  2M8L A;  1YIJ P;  2OTJ P;  3G1G A;  1ZMB A;  4GR2 A;  1Q7Y Q;  3MGE A;  4XFX A;  1YJW P;  2BHV A;  1RNI A;  4PH1 A;  1M6E X;  1QVG O;  4XRO A;  3CD6 P;  3B5I A;  2PY8 A;  4XFY A;  1VQ7 P;  5BS2 A;  2PEI A;  3OW2 O;  2JYG A;  4GR6 A;  1KC8 Q;  2LF4 A;  4XFZ A;  3CC2 P;  1VQN P;  5F2N A;  2PEK A;  3G28 A;  5HGM A;  5HGO A;  3G0V A;  2Z46 A;  3CMA P;  4U0F A;  5JPA A;  3G4S P;  2EIA A;  5HGL A;  5HGN A;  3H47 A;  1EIA A;  1A8O A;  1NJI Q;  3G21 A;  3E2D A;  1Q86 Q;  4U0D A;  1RO2 A;  1QRJ A;  2CWO A;  2PEQ A;  4U0B A;  1YIT P;  1E6J P;  3CCE P;  3CCV P;  3CCR P;  2P9X A;  3G26 A;  5DCK A;  1VQP P;  3I55 P;  4U0E A;  3CME P;  2M8N A;  2PEJ A;  1S72 P;  1KD1 Q;  2OTL P;  1K30 A;  2QEX P;  1W2B O;  3G1I A;  2ONT A;  4U0A A;  2M8P A;  1K8A Q;  3M1M A;  3H0D A;  1M90 Q;  1YI2 P;  2KOD A;  1M6N A;  4COP A;  1K9M Q;  2XV6 A;  4QNB A;  1VQL P;  2PEN A;  1VQK P;  3P05 A;  1M74 A;  4COC A;  3LRY A;  2PEM A;  1QVF O;  1VQ8 P;  2XXM A;  3DS4 A;  3DS2 A;  3DPH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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