2PEOA

Crystal structure of rbcx from anabaena ca
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
115
structure length
113
Chain Sequence
MNLKQIAKDTAKTLQSYLTYQALRTVLAQLGETNPPLALWLHNFSAGQDGEKYIEELFLEKPDLALRIMTVREHIAEEIAEFLPEMVVTGIQQANMEKRRQHLERMTQVSLSH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Chaperone
molecule keywords RbcX protein
publication title Structure and Function of RbcX, an Assembly Chaperone for Hexadecameric Rubisco.
pubmed doi rcsb
source organism Anabaena sp.
total genus 49
structure length 113
sequence length 115
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-04-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02341 RcbX RbcX protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.210 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 2peoA00
2PEQA 2PEOA 2PENA 2Z46A 2PEMA 2PY8A 3Q20A 4GR2A 2PEJA 2PEIA 3RG6C 5BS2A 4GR6A 2PEKA 2Z45A 3HYBA 5BS1A 2Z44A
chains in the Genus database with same CATH superfamily
1L0HA 2PY8A 3H4EA 1VQ6P 3NTEA 2MY5A 1IMPA 2PEQA 2M5RA 2KOOA 2VLQA 1CEIA 1VQLP 3DS4A 3CCVP 4PWVB 1ZNVA 2JQ4A 3G29A 1YHQP 4MRTC 1K73Q 4COCA 1VHNA 4F37A 2JBGA 1M90Q 2CG5B 2PEMA 2EFJA 1UJZA 2K94A 1RNIA 1D1DA 2LL8A 1QVGO 3E2DA 3G28A 2KR5A 5F2NA 4QKOA 4NEOA 4CA3A 4XFXA 1VQOP 1VQPP 2JYGA 3EJEA 3G1GA 3Q20A 2XT1A 4U0FA 2JU2A 3I56P 4WYMA 3RG2A 1OR5A 3CCMP 3CXCO 1RO2A 2PEIA 2CQ8A 2WPTA 3LMOA 3GJNA 5DCKA 2KGEA 3B5IA 2GDYA 1FR2A 2Z44A 2OTJP 1MZ8A 1Q81Q 2FVAA 2LKIA 2CWOA 2GYKA 2KOQA 5HGNA 2VLNA 1M1KQ 2BUOA 3DS0A 3CCLP 2N50A 2L6EA 2X2BA 4H2XC 5HGOA 3DS3A 2MR7A 1W2BO 1AUMA 3EJBA 2AFEA 2EHSA 2XZ0D 1DNYA 5HV8A 2XXMA 4COPA 1M6EX 2AF8A 2EIAA 2PEJA 2AVAA 4U0EA 3CCUP 3G21A 3P05A 1UNKA 2PENA 2KOPA 2GZEA 1YIJP 1M6NA 2LIUA 1ZMBA 4GR2A 2LF4A 2CGQA 2OARA 2KOSA 1BXIA 2KG9A 1VKUA 2N98A 1Q82Q 1K9MQ 1HY8A 4PH0A 2GDWA 2K0XA 3CCJP 4BPGA 5JPAA 2FHSC 1YI2P 2FACA 2FVEA 2LIWA 2KG8A 1QRJA 3DS2A 2MR8A 4PXHB 3GZMA 5EW5E 1DV5A 2KGAA 1E6JP 3G71P 4H2WC 1NQ4A 2QEXP 2K0DX 2BHVA 2GZJA 7CEIA 5BS2A 1A43A 3M1MA 4BPHA 3WBHA 2N5IA 2GZFA 3B4QA 2K0YA 3DS5A 4QNBA 3DPHA 5EJDA 2JAZA 1A8OA 1AYIA 2DNWA 2Z45A 1KD1Q 2PNGA 2N6YA 5KP6B 2NO8A 1VQ7P 4XFYA 1VQKP 1GXHA 2AFDA 2EG5A 2VLPA 4UHPB 2XV6A 3VRLC 1HQBA 3GKLC 1VQMP 3MGEA 2P9XA 1RO0A 4M0IA 2KGDA 1EMVA 4H2YC 3G1IA 1Q7YQ 2E1MA 4XROA 3CC4P 5KP8B 3H0DA 2JGPA 3CMAP 2FADA 2OTLP 1VQ8P 3LRYA 2JO0A 3EJDA 5F2KA 2ROQA 1M74A 5F2OA 1BAJA 1T8KA 2M8NA 1KQSO 2ONTA 3G6EP 2MVVA 3CCRP 4XFZA 3CD6P 1S72P 2LOLA 3CC7P 3DS1A 3RG6C 4PH1A 2MVUA 1Q86Q 2LMLA 5KP7B 2EHTA 4IPYA 4XRQA 2N6ZA 2MF4A 1YJWP 4GR6A 3CPWO 2DGYA 2VSQA 1VQ9P 1E0HA 1X3OA 2PEKA 2KW2A 3CCSP 3GZLA 1YJ9P 2K2QA 2KGCA 1QVFO 2K93A 2L0QA 3OW2O 2GZIA 4DG9A 1EOQA 2JU1A 2FQ0A 3U43A 1K30A 5I4TG 3G26A 1K8AQ 2KG6A 2L9FA 1VQ5P 2QNWA 5HGLA 4U0CA 3I55P 3CC2P 2XZ1C 1GXGA 3NY7B 4HKGA 3CMEP 2L4BA 5HGMA 1YITP 4R0MA 2LTEA 4U0AA 1Z6MA 2CNRA 3DTJA 2PEOA 3HZQA 2GDXA 1IUQA 3H47A 2Z46A 2JB0A 2GZGA 5HVCA 2VLOA 3G0VA 1IMQA 2L22A 1VQ4P 3CE7A 1KLPA 1KC8Q 2ERHA 2FVFA 2FQ1A 2QA4P 5BS1A 2K5XA 1EIAA 2FQ2A 2KORA 2FAEA 1L0IA 1NJIQ 2M8PA 3G4SP 1AF8A 2M8LA 3HYBA 1ACPA 2MD9A 2LPKA 2JYLA 2K92A 4BPFA 3CCEP 5CZDB 3CCQP 1JJ2O 2N5HA 4U0BA 4IZ6A 2KWLA 2KODA 1GPJA 4U0DA 1F80D 1VQNP 1YJNP 1N8RQ
chains in the Genus database with same CATH topology
3CCSP 1M1KQ 2PY8A 3H4EA 1VQ6P 2BUOA 1YJ9P 1A8OA 3DS0A 3NTEA 3CCLP 2Z45A 2L6EA 2PEQA 5HGOA 3DS3A 1KD1Q 1W2BO 1QVFO 1AUMA 3OW2O 1VQ7P 4XFYA 1VQKP 1VQLP 1EOQA 2XXMA 3DS4A 4COPA 3CCVP 1YJNP 2EG5A 1M6EX 2EIAA 1K30A 5I4TG 2PEJA 3G26A 1K8AQ 2XV6A 1VQ5P 3G29A 3VRLC 5HGLA 3I55P 4U0CA 1YHQP 1K73Q 4COCA 3CC2P 1VQMP 4U0EA 3CMEP 3CCUP 3MGEA 2P9XA 1RO0A 4M0IA 5HGMA 1YITP 3G21A 3G1IA 3P05A 4U0AA 3DTJA 2PEOA 3HZQA 1Q7YQ 2PENA 1M90Q 2PEMA 2EFJA 2E1MA 1RNIA 1D1DA 1YIJP 1M6NA 1IUQA 3H47A 1ZMBA 2Z46A 4XROA 1QVGO 3G0VA 3E2DA 4GR2A 3G28A 1VQ4P 3CC4P 5F2NA 3H0DA 1N8RQ 1KC8Q 2LF4A 2OARA 4XFXA 3CMAP 2QA4P 1VQOP 5BS1A 1Q82Q 1K9MQ 1VQPP 4PH0A 1EIAA 1VQ8P 2OTLP 2JYGA 3G1GA 2JO0A 3LRYA 5F2KA 3Q20A 1M74A 3CCJP 5F2OA 5JPAA 2XT1A 1BAJA 2M8NA 1YI2P 4U0FA 1NJIQ 2M8PA 1KQSO 3I56P 3G4SP 2ONTA 1QRJA 4WYMA 3DS2A 3CCMP 2M8LA 3G6EP 3CXCO 3HYBA 3CCRP 4XFZA 3CD6P 1RO2A 1S72P 3CC7P 2JYLA 3DS1A 2PEIA 3RG6C 1E6JP 4PH1A 3G71P 1Q86Q 4IPYA 3CCEP 5DCKA 4QNBA 3B5IA 3CCQP 4XRQA 2QEXP 1JJ2O 2BHVA 5BS2A 1YJWP 4U0BA 4GR6A 1A43A 2DGYA 3M1MA 3CPWO 3WBHA 2Z44A 2OTJP 2KODA 1VQ9P 1Q81Q 4U0DA 3DS5A 1VQNP 2CWOA 2PEKA 3DPHA 5HGNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PEQ A;  2PEO A;  2PEN A;  2Z46 A;  2PEM A;  2PY8 A;  3Q20 A;  4GR2 A;  2PEJ A;  2PEI A;  3RG6 C;  5BS2 A;  4GR6 A;  2PEK A;  2Z45 A;  3HYB A;  5BS1 A;  2Z44 A; 
#chains in the Genus database with same CATH topology
 1L0H A;  2PY8 A;  3H4E A;  1VQ6 P;  3NTE A;  2MY5 A;  1IMP A;  2PEQ A;  2M5R A;  2KOO A;  2VLQ A;  1CEI A;  1VQL P;  3DS4 A;  3CCV P;  4PWV B;  1ZNV A;  2JQ4 A;  3G29 A;  1YHQ P;  4MRT C;  1K73 Q;  4COC A;  1VHN A;  4F37 A;  2JBG A;  1M90 Q;  2CG5 B;  2PEM A;  2EFJ A;  1UJZ A;  2K94 A;  1RNI A;  1D1D A;  2LL8 A;  1QVG O;  3E2D A;  3G28 A;  2KR5 A;  5F2N A;  4QKO A;  4NEO A;  4CA3 A;  4XFX A;  1VQO P;  1VQP P;  2JYG A;  3EJE A;  3G1G A;  3Q20 A;  2XT1 A;  4U0F A;  2JU2 A;  3I56 P;  4WYM A;  3RG2 A;  1OR5 A;  3CCM P;  3CXC O;  1RO2 A;  2PEI A;  2CQ8 A;  2WPT A;  3LMO A;  3GJN A;  5DCK A;  2KGE A;  3B5I A;  2GDY A;  1FR2 A;  2Z44 A;  2OTJ P;  1MZ8 A;  1Q81 Q;  2FVA A;  2LKI A;  2CWO A;  2GYK A;  2KOQ A;  5HGN A;  2VLN A;  1M1K Q;  2BUO A;  3DS0 A;  3CCL P;  2N50 A;  2L6E A;  2X2B A;  4H2X C;  5HGO A;  3DS3 A;  2MR7 A;  1W2B O;  1AUM A;  3EJB A;  2AFE A;  2EHS A;  2XZ0 D;  1DNY A;  5HV8 A;  2XXM A;  4COP A;  1M6E X;  2AF8 A;  2EIA A;  2PEJ A;  2AVA A;  4U0E A;  3CCU P;  3G21 A;  3P05 A;  1UNK A;  2PEN A;  2KOP A;  2GZE A;  1YIJ P;  1M6N A;  2LIU A;  1ZMB A;  4GR2 A;  2LF4 A;  2CGQ A;  2OAR A;  2KOS A;  1BXI A;  2KG9 A;  1VKU A;  2N98 A;  1Q82 Q;  1K9M Q;  1HY8 A;  4PH0 A;  2GDW A;  2K0X A;  3CCJ P;  4BPG A;  5JPA A;  2FHS C;  1YI2 P;  2FAC A;  2FVE A;  2LIW A;  2KG8 A;  1QRJ A;  3DS2 A;  2MR8 A;  4PXH B;  3GZM A;  5EW5 E;  1DV5 A;  2KGA A;  1E6J P;  3G71 P;  4H2W C;  1NQ4 A;  2QEX P;  2K0D X;  2BHV A;  2GZJ A;  7CEI A;  5BS2 A;  1A43 A;  3M1M A;  4BPH A;  3WBH A;  2N5I A;  2GZF A;  3B4Q A;  2K0Y A;  3DS5 A;  4QNB A;  3DPH A;  5EJD A;  2JAZ A;  1A8O A;  1AYI A;  2DNW A;  2Z45 A;  1KD1 Q;  2PNG A;  2N6Y A;  5KP6 B;  2NO8 A;  1VQ7 P;  4XFY A;  1VQK P;  1GXH A;  2AFD A;  2EG5 A;  2VLP A;  4UHP B;  2XV6 A;  3VRL C;  1HQB A;  3GKL C;  1VQM P;  3MGE A;  2P9X A;  1RO0 A;  4M0I A;  2KGD A;  1EMV A;  4H2Y C;  3G1I A;  1Q7Y Q;  2E1M A;  4XRO A;  3CC4 P;  5KP8 B;  3H0D A;  2JGP A;  3CMA P;  2FAD A;  2OTL P;  1VQ8 P;  3LRY A;  2JO0 A;  3EJD A;  5F2K A;  2ROQ A;  1M74 A;  5F2O A;  1BAJ A;  1T8K A;  2M8N A;  1KQS O;  2ONT A;  3G6E P;  2MVV A;  3CCR P;  4XFZ A;  3CD6 P;  1S72 P;  2LOL A;  3CC7 P;  3DS1 A;  3RG6 C;  4PH1 A;  2MVU A;  1Q86 Q;  2LML A;  5KP7 B;  2EHT A;  4IPY A;  4XRQ A;  2N6Z A;  2MF4 A;  1YJW P;  4GR6 A;  3CPW O;  2DGY A;  2VSQ A;  1VQ9 P;  1E0H A;  1X3O A;  2PEK A;  2KW2 A;  3CCS P;  3GZL A;  1YJ9 P;  2K2Q A;  2KGC A;  1QVF O;  2K93 A;  2L0Q A;  3OW2 O;  2GZI A;  4DG9 A;  1EOQ A;  2JU1 A;  2FQ0 A;  3U43 A;  1K30 A;  5I4T G;  3G26 A;  1K8A Q;  2KG6 A;  2L9F A;  1VQ5 P;  2QNW A;  5HGL A;  4U0C A;  3I55 P;  3CC2 P;  2XZ1 C;  1GXG A;  3NY7 B;  4HKG A;  3CME P;  2L4B A;  5HGM A;  1YIT P;  4R0M A;  2LTE A;  4U0A A;  1Z6M A;  2CNR A;  3DTJ A;  2PEO A;  3HZQ A;  2GDX A;  1IUQ A;  3H47 A;  2Z46 A;  2JB0 A;  2GZG A;  5HVC A;  2VLO A;  3G0V A;  1IMQ A;  2L22 A;  1VQ4 P;  3CE7 A;  1KLP A;  1KC8 Q;  2ERH A;  2FVF A;  2FQ1 A;  2QA4 P;  5BS1 A;  2K5X A;  1EIA A;  2FQ2 A;  2KOR A;  2FAE A;  1L0I A;  1NJI Q;  2M8P A;  3G4S P;  1AF8 A;  2M8L A;  3HYB A;  1ACP A;  2MD9 A;  2LPK A;  2JYL A;  2K92 A;  4BPF A;  3CCE P;  5CZD B;  3CCQ P;  1JJ2 O;  2N5H A;  4U0B A;  4IZ6 A;  2KWL A;  2KOD A;  1GPJ A;  4U0D A;  1F80 D;  1VQN P;  1YJN P;  1N8R Q; 
#chains in the Genus database with same CATH homology
 3CCS P;  1M1K Q;  2PY8 A;  3H4E A;  1VQ6 P;  2BUO A;  1YJ9 P;  1A8O A;  3DS0 A;  3NTE A;  3CCL P;  2Z45 A;  2L6E A;  2PEQ A;  5HGO A;  3DS3 A;  1KD1 Q;  1W2B O;  1QVF O;  1AUM A;  3OW2 O;  1VQ7 P;  4XFY A;  1VQK P;  1VQL P;  1EOQ A;  2XXM A;  3DS4 A;  4COP A;  3CCV P;  1YJN P;  2EG5 A;  1M6E X;  2EIA A;  1K30 A;  5I4T G;  2PEJ A;  3G26 A;  1K8A Q;  2XV6 A;  1VQ5 P;  3G29 A;  3VRL C;  5HGL A;  3I55 P;  4U0C A;  1YHQ P;  1K73 Q;  4COC A;  3CC2 P;  1VQM P;  4U0E A;  3CME P;  3CCU P;  3MGE A;  2P9X A;  1RO0 A;  4M0I A;  5HGM A;  1YIT P;  3G21 A;  3G1I A;  3P05 A;  4U0A A;  3DTJ A;  2PEO A;  3HZQ A;  1Q7Y Q;  2PEN A;  1M90 Q;  2PEM A;  2EFJ A;  2E1M A;  1RNI A;  1D1D A;  1YIJ P;  1M6N A;  1IUQ A;  3H47 A;  1ZMB A;  2Z46 A;  4XRO A;  1QVG O;  3G0V A;  3E2D A;  4GR2 A;  3G28 A;  1VQ4 P;  3CC4 P;  5F2N A;  3H0D A;  1N8R Q;  1KC8 Q;  2LF4 A;  2OAR A;  4XFX A;  3CMA P;  2QA4 P;  1VQO P;  5BS1 A;  1Q82 Q;  1K9M Q;  1VQP P;  4PH0 A;  1EIA A;  1VQ8 P;  2OTL P;  2JYG A;  3G1G A;  2JO0 A;  3LRY A;  5F2K A;  3Q20 A;  1M74 A;  3CCJ P;  5F2O A;  5JPA A;  2XT1 A;  1BAJ A;  2M8N A;  1YI2 P;  4U0F A;  1NJI Q;  2M8P A;  1KQS O;  3I56 P;  3G4S P;  2ONT A;  1QRJ A;  4WYM A;  3DS2 A;  3CCM P;  2M8L A;  3G6E P;  3CXC O;  3HYB A;  3CCR P;  4XFZ A;  3CD6 P;  1RO2 A;  1S72 P;  3CC7 P;  2JYL A;  3DS1 A;  2PEI A;  3RG6 C;  1E6J P;  4PH1 A;  3G71 P;  1Q86 Q;  4IPY A;  3CCE P;  5DCK A;  4QNB A;  3B5I A;  3CCQ P;  4XRQ A;  2QEX P;  1JJ2 O;  2BHV A;  5BS2 A;  1YJW P;  4U0B A;  4GR6 A;  1A43 A;  2DGY A;  3M1M A;  3CPW O;  3WBH A;  2Z44 A;  2OTJ P;  2KOD A;  1VQ9 P;  1Q81 Q;  4U0D A;  3DS5 A;  1VQN P;  2CWO A;  2PEK A;  3DPH A;  5HGN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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