2PHNA

Crystal structure of an amide bond forming f420-gamma glutamyl ligase from archaeoglobus fulgidus
Total Genus 70
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
70
sequence length
248
structure length
248
Chain Sequence
RVEVFPVEGLPLIKEGDDLAELISSRVRFEDGDVLVVCSTVISKAEGRIRRLEEFNPSERAKEIAARIGKPAEFVQAVLEESEEVLLDFPFLLVKAKFGNVCVNAGIDASNVEEGSLLLPPLDPDGSAEKLRRRILELTGKRVGVIITDTNGRCFRRGVVGFAIGISGVKAMKDWIGRKDLYGRELEVTVECVADEIAAFANLLMGEGGDGIPAVVVRGLNVAGEGSMEEIYRSEEEDVIRRCLKRCL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ligase
molecule keywords F420-0:gamma-glutamyl ligase
publication title Structure of an Amide Bond Forming F(420):gammagamma-glutamyl Ligase from Archaeoglobus Fulgidus - A Member of a New Family of Non-ribosomal Peptide Synthases.
pubmed doi rcsb
source organism Archaeoglobus fulgidus dsm 4304
total genus 70
structure length 248
sequence length 248
chains with identical sequence B
ec nomenclature ec 6.3.2.31: Coenzyme F420-0:L-glutamate ligase.
pdb deposition date 2007-04-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01996 F420_ligase F420-0:Gamma-glutamyl ligase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1330.100 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30; Chain: A; CofE-like 2phnA01
3.90.1660.10 Alpha Beta Alpha-Beta Complex CofE-like fold CofE-like domain 2phnA02
2PHNA 2G9IA
chains in the Genus database with same CATH superfamily
3UT5A 3IKFA 4C8IA 1YJWF 3HKDA 2W8BC 3N2KB 3RYHA 4BT4A 5JH7A 3JAMM 2FC3A 3E22B 5JVDB 1XRGA 3GYQA 4NWOB 3WGNA 5KX5B 4I55A 2VAMA 4O4HB 1Q7YH 1VQ9F 1VQ4F 1W5BA 4X1IB 2KG4A 2R751 3KHNA 3F0GA 2VAWA 5HY2A 4ZHWA 2Z1UA 2QTPA 3HKCA 5HY0A 2RHLA 2AMTA 4FFBB 2YYEA 1COMA 2CVLA 3JVHA 1OFUA 1W5AA 2AIFA 3I7TA 4BT2A 3FPIA 1NQ3A 1H7MA 4HNAA 1GX1A 3OBWA 1KNKA 1T0KB 1K9MH 4C8EA 2OHWA 2GLZA 2VGNA 3JAWA 3JCMM 4IIJA 3VYTC 3LMEA 2HP0A 2IAFA 3NVIB 1Z5WA 4BT5A 1TUBB 1CLIA 1VQOF 5JQGA 5GIOC 5LP6C 2YXZA 4O4IA 4BW0B 5LXTA 3CCEF 1VQVA 4LNUA 4X1KA 1U43A 1YHQF 4E6EA 1JFFA 5EYPA 2H8CA 1VQ8F 3GHZA 3O85A 4ZI7A 2HS4A 4TUYA 3WGJA 5HY1A 3FD5A 3V4DA 1W3EX 5LP6B 3QUWA 3NK6A 5C8YB 1W5FA 2MQEA 4BVRA 4TV9B 3T80A 3WJRA 1ONIA 4DRXA 1K8AH 3Q8HA 1W581 3NMUC 1YI2F 1JJ2F 1VK3A 1QVFF 3SIVA 3CCLF 1S72F 3OW2F 3CMAF 3VMFB 3PLAC 1XV2A 3KE1A 4BT7A 2V9YA 4NUTA 1YQNA 5CA0A 2QA4F 1VQ5F 4WBNB 3IEQA 3JARB 2KGWA 4O2BB 1TVKA 2CZWA 2Z01A 3WGKA 3HAXD 2KTVA 4G4WA 5HP7A 3TD5A 2UYPA 5IT9M 3V7EA 2R6R1 2QI2A 3ZP4A 1X52A 3IMPA 3JASB 2CWJA 1H47A 5CA1A 2VXYA 1VQLF 4F6RA 3D00A 1SA0B 1Q81H 3N2GB 3JALA 3RYFB 3JATB 2ZVZA 1VQMF 5EB0A 1FSZA 3HTNA 5CB4B 3I56F 3I3FA 1DT9A 3RA5A 5LA6A 3V7QA 5EIBC 3LWQC 3CCRF 2DT4A 1M90H 3KIZA 2JNBA 1FNJA 2CW4A 2KTUA 2VAPA 3MQWA 3J80M 4EI9A 3LWPC 4DXDA 1W41A 1X25A 3D54A 3HKBB 2WALA 3JAKA 1KQSF 3MDOA 3E1YA 5IYZB 3HJWC 2OZBA 3OBYA 5BMVA 1N8RH 2L26A 3B6NA 4ZOLB 2HRYA 1Q82H 3KJJA 3RYHB 5JH7B 1U40A 4X20A 3TD4A 5IJ9A 5HXUA 4O2AB 2N48A 4YJ3A 2VGMA 5HWEA 1K73H 3F0FA 3N4ZA 4I55B 1QAHA 4RHAA 3D01A 1GO1A 1VQNF 3LWVC 4TV8A 5B8FA 3WGMA 1U3LA 1T0AA 2Z1FA 3LWRC 2RHOA 3P10A 4O4JA 3ESJA 5EAZA 2QEXF 4HNAB 4PWTA 1JY8A 5MN5A 3C9RA 1OAPA 3C9UA 4O4LB 4X3LA 1RLUA 1YJNF 3S0HA 3JAWB 2DYYA 2CSLA 2NMUA 2B33A 3CPQA 3ON1A 5KMGB 2HP0B 3RE3A 5HY4A 2RHHA 1CN7A 1YIJF 1IPAA 2HQSC 2H6LA 4R40B 3CC2F 5J2UA 4M8IA 5JCOA 5G4UC 3N2KA 4LCKA 2ALEA 4ZHQB 1VQPF 1JFFB 3E22A 5GINC 5JVDA 1FFXB 5EYPB 5GONB 5KX5A 1X7OA 3QTYA 1RA4A 4O4HA 3DC2A 3WJPA 4X1IA 3HKEB 4FFBA 4U39A 4B5CA 5J2TB 2K1SA 4C82A 1Q86H 1GO0A 5LYJB 1XHOA 3MCAB 1NJIH 3VO8A 3AGKA 4B62A 3CCJF 3K14A 4X3MA 1SZQA 3C9SA 1CK2A 2UYNB 1IV4A 3F6MA 4ERHA 1W5EA 1W59A 5EIBD 5CA0B 3R0PA 4IHJA 1JN1A 1NMUB 1TUBA 3RYIB 1IV1A 3V3TA 3ZO8A 5GANK 5EWRA 3CC7F 4BT3A 5CA1B 3P0ZA 1RLGA 4C81A 4F6RB 2HX0A 5HP8A 1W2BF 4G88A 3M4SA 1ZWZA 2HS3A 1IV2A 3S0WA 3LYBA 3JALB 3F0EA 4BVSA 4EB6A 3G4SF 4I4TB 4BVQA 3MBMA 3NK7A 1VHAA 3M84A 1PF5A 2CHSA 3S02A 2RB9A 3CCVF 3N4YA 3S0YA 1KD1H 1DBFA 4X1YA 3CMEF 2I6RA 2HVYD 3CCUF 1YITF 3CC4F 2UYKA 3RYCB 2OTJF 4C4WC 5A2QM 5LOVB 3CXCF 2BTUA 3L7QA 4XCQA 4WBNA 5FNVB 4O2BA 3VCZA 4YJ2B 5EZYA 5ITZA 2Z1EA 2PMPA 4EI8A 4U3JB 5FLXM 3VYUC 3C8LA 3JASA 4X20B 3UT5B 4B45A 3CPWF 2ZF8A 4YJ3B 5IJ0A 3NVKE 1RQ2A 3HKDB 3ELCA 2LBXA 3N2GA 3RYFA 3JATA 5MN4A 2AIZP 4I50A 3VIUA 2Q1YA 2LBWA 5GAPK 2HP3A 1KNJA 4O4JB 1Q8RA 3G6EF 2UYJA 3HKCB 1W42A 5GIPC 4ZHVA 2BTOA 3BYQA 1UI9A 2GVIA 1Z5VA 3WXMB 3P4EA 3J7AR 1ODEA 5J2UB 4IIJB 1VQKF 4ZOLA 2EWCA 3VTIC 2OTLF 3M1XA 3WPXA 3VOAA 4O2AA 2FGYA 2IQQA 3MCQA 5FJ4C 3ZP7A 5JQGB 4O4IB 3K0TA 5MN6A 5LXTB 3PAFA 4KWEA 2I6DA 4LNUB 4X1KB 3OONA 3VYSC 3CCSF 1JD1A 5EB1B 4ZHYB 3E20B 3FFMA 3CB2A 4ZI7B 4TUYB 2Z1TA 1U3PA 1YJ9F 3SIUA 2LCAA 3TD3A 5EO3A 3ERNA 4O4LA 5HXZA 3GTZA 3S06A 3VOBA 4DRXB 3WPWA 1QD9A 5KMGA 4G4VA 4IHJB 1QU9A 1W55A 3IKEA 2HS0A 1VQ6F 1E7KA 1VH8A 4ZHQA 2PHNA 4RQOA 4BY9D 4NQ3A 1FFXA 3FD6A 2RHJA 3CD6F 5GONA 1TVKB 4G4ZA 2LBTA 1W40A 4EI7A 2ZAUA 2ZVYA 4EB6B 3HKEA 5DCVA 1GZ0A 3S03A 3CCQF 1SDSA 5J2TA 3IR9A 5LP6A 5LYJA 4X1YB 2H8EA 4TZZA 3DDNA 5C8YA 3LFOA 1X7PA 4TV9A 1UFYA 3EORA 2ZOVA 5LA6B 2UYNA 4BVTA 3C9TA 3KJKA 4G4XA 2HRUA 4ZK7A 1QVGF 3RYIA 1M1KH 5EZYB 1KC8H 1XBIA 3F0DA 5ITZB 2P6YA 1PXWA 4C8GA 4G4YA 1J7HA 2BO1A 3JARA 3ZOPA 3JAKB 3HWUA 2Q1XA 3G71F 3LDTA 5BMVB 2BTQB 3LWOC 2G9IA 3J81M 5IJ0B 2IG8A 4B46A 1FNKA 1W57A 1R1MA 4I4TA 4I50B 3K2XA 3K12A 5IJ9B 4BT6A 3RA6A 1SA0A 3FBAA 1H48A 1RQ7A 2GZLA 3IEWA 2CHTA 4TV8B 5CB4A 3CG6A 5G4VC 2ZODA 3VI6A 3U0OA 3RYCA 5LOVA 2OTMA 3CYQA 3CCMF 5FNVA 1YGYA 4YJ2A 3QHDA 3CYPB 3WJQA 2F9ZC 5JCOC 5AVMA 1VQ7F 2UZHA 1IV3A 3WGLA 4U3JA 3I55F 3HKBA 5IYZA
chains in the Genus database with same CATH topology
2PHNA 2G9IA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PHN A;  2G9I A; 
#chains in the Genus database with same CATH topology
 3UT5 A;  3IKF A;  4C8I A;  1YJW F;  3HKD A;  2W8B C;  3N2K B;  3RYH A;  4BT4 A;  5JH7 A;  3JAM M;  2FC3 A;  3E22 B;  5JVD B;  1XRG A;  3GYQ A;  4NWO B;  3WGN A;  5KX5 B;  4I55 A;  2VAM A;  4O4H B;  1Q7Y H;  1VQ9 F;  1VQ4 F;  1W5B A;  4X1I B;  2KG4 A;  2R75 1;  3KHN A;  3F0G A;  2VAW A;  5HY2 A;  4ZHW A;  2Z1U A;  2QTP A;  3HKC A;  5HY0 A;  2RHL A;  2AMT A;  4FFB B;  2YYE A;  1COM A;  2CVL A;  3JVH A;  1OFU A;  1W5A A;  2AIF A;  3I7T A;  4BT2 A;  3FPI A;  1NQ3 A;  1H7M A;  4HNA A;  1GX1 A;  3OBW A;  1KNK A;  1T0K B;  1K9M H;  4C8E A;  2OHW A;  2GLZ A;  2VGN A;  3JAW A;  3JCM M;  4IIJ A;  3VYT C;  3LME A;  2HP0 A;  2IAF A;  3NVI B;  1Z5W A;  4BT5 A;  1TUB B;  1CLI A;  1VQO F;  5JQG A;  5GIO C;  5LP6 C;  2YXZ A;  4O4I A;  4BW0 B;  5LXT A;  3CCE F;  1VQV A;  4LNU A;  4X1K A;  1U43 A;  1YHQ F;  4E6E A;  1JFF A;  5EYP A;  2H8C A;  1VQ8 F;  3GHZ A;  3O85 A;  4ZI7 A;  2HS4 A;  4TUY A;  3WGJ A;  5HY1 A;  3FD5 A;  3V4D A;  1W3E X;  5LP6 B;  3QUW A;  3NK6 A;  5C8Y B;  1W5F A;  2MQE A;  4BVR A;  4TV9 B;  3T80 A;  3WJR A;  1ONI A;  4DRX A;  1K8A H;  3Q8H A;  1W58 1;  3NMU C;  1YI2 F;  1JJ2 F;  1VK3 A;  1QVF F;  3SIV A;  3CCL F;  1S72 F;  3OW2 F;  3CMA F;  3VMF B;  3PLA C;  1XV2 A;  3KE1 A;  4BT7 A;  2V9Y A;  4NUT A;  1YQN A;  5CA0 A;  2QA4 F;  1VQ5 F;  4WBN B;  3IEQ A;  3JAR B;  2KGW A;  4O2B B;  1TVK A;  2CZW A;  2Z01 A;  3WGK A;  3HAX D;  2KTV A;  4G4W A;  5HP7 A;  3TD5 A;  2UYP A;  5IT9 M;  3V7E A;  2R6R 1;  2QI2 A;  3ZP4 A;  1X52 A;  3IMP A;  3JAS B;  2CWJ A;  1H47 A;  5CA1 A;  2VXY A;  1VQL F;  4F6R A;  3D00 A;  1SA0 B;  1Q81 H;  3N2G B;  3JAL A;  3RYF B;  3JAT B;  2ZVZ A;  1VQM F;  5EB0 A;  1FSZ A;  3HTN A;  5CB4 B;  3I56 F;  3I3F A;  1DT9 A;  3RA5 A;  5LA6 A;  3V7Q A;  5EIB C;  3LWQ C;  3CCR F;  2DT4 A;  1M90 H;  3KIZ A;  2JNB A;  1FNJ A;  2CW4 A;  2KTU A;  2VAP A;  3MQW A;  3J80 M;  4EI9 A;  3LWP C;  4DXD A;  1W41 A;  1X25 A;  3D54 A;  3HKB B;  2WAL A;  3JAK A;  1KQS F;  3MDO A;  3E1Y A;  5IYZ B;  3HJW C;  2OZB A;  3OBY A;  5BMV A;  1N8R H;  2L26 A;  3B6N A;  4ZOL B;  2HRY A;  1Q82 H;  3KJJ A;  3RYH B;  5JH7 B;  1U40 A;  4X20 A;  3TD4 A;  5IJ9 A;  5HXU A;  4O2A B;  2N48 A;  4YJ3 A;  2VGM A;  5HWE A;  1K73 H;  3F0F A;  3N4Z A;  4I55 B;  1QAH A;  4RHA A;  3D01 A;  1GO1 A;  1VQN F;  3LWV C;  4TV8 A;  5B8F A;  3WGM A;  1U3L A;  1T0A A;  2Z1F A;  3LWR C;  2RHO A;  3P10 A;  4O4J A;  3ESJ A;  5EAZ A;  2QEX F;  4HNA B;  4PWT A;  1JY8 A;  5MN5 A;  3C9R A;  1OAP A;  3C9U A;  4O4L B;  4X3L A;  1RLU A;  1YJN F;  3S0H A;  3JAW B;  2DYY A;  2CSL A;  2NMU A;  2B33 A;  3CPQ A;  3ON1 A;  5KMG B;  2HP0 B;  3RE3 A;  5HY4 A;  2RHH A;  1CN7 A;  1YIJ F;  1IPA A;  2HQS C;  2H6L A;  4R40 B;  3CC2 F;  5J2U A;  4M8I A;  5JCO A;  5G4U C;  3N2K A;  4LCK A;  2ALE A;  4ZHQ B;  1VQP F;  1JFF B;  3E22 A;  5GIN C;  5JVD A;  1FFX B;  5EYP B;  5GON B;  5KX5 A;  1X7O A;  3QTY A;  1RA4 A;  4O4H A;  3DC2 A;  3WJP A;  4X1I A;  3HKE B;  4FFB A;  4U39 A;  4B5C A;  5J2T B;  2K1S A;  4C82 A;  1Q86 H;  1GO0 A;  5LYJ B;  1XHO A;  3MCA B;  1NJI H;  3VO8 A;  3AGK A;  4B62 A;  3CCJ F;  3K14 A;  4X3M A;  1SZQ A;  3C9S A;  1CK2 A;  2UYN B;  1IV4 A;  3F6M A;  4ERH A;  1W5E A;  1W59 A;  5EIB D;  5CA0 B;  3R0P A;  4IHJ A;  1JN1 A;  1NMU B;  1TUB A;  3RYI B;  1IV1 A;  3V3T A;  3ZO8 A;  5GAN K;  5EWR A;  3CC7 F;  4BT3 A;  5CA1 B;  3P0Z A;  1RLG A;  4C81 A;  4F6R B;  2HX0 A;  5HP8 A;  1W2B F;  4G88 A;  3M4S A;  1ZWZ A;  2HS3 A;  1IV2 A;  3S0W A;  3LYB A;  3JAL B;  3F0E A;  4BVS A;  4EB6 A;  3G4S F;  4I4T B;  4BVQ A;  3MBM A;  3NK7 A;  1VHA A;  3M84 A;  1PF5 A;  2CHS A;  3S02 A;  2RB9 A;  3CCV F;  3N4Y A;  3S0Y A;  1KD1 H;  1DBF A;  4X1Y A;  3CME F;  2I6R A;  2HVY D;  3CCU F;  1YIT F;  3CC4 F;  2UYK A;  3RYC B;  2OTJ F;  4C4W C;  5A2Q M;  5LOV B;  3CXC F;  2BTU A;  3L7Q A;  4XCQ A;  4WBN A;  5FNV B;  4O2B A;  3VCZ A;  4YJ2 B;  5EZY A;  5ITZ A;  2Z1E A;  2PMP A;  4EI8 A;  4U3J B;  5FLX M;  3VYU C;  3C8L A;  3JAS A;  4X20 B;  3UT5 B;  4B45 A;  3CPW F;  2ZF8 A;  4YJ3 B;  5IJ0 A;  3NVK E;  1RQ2 A;  3HKD B;  3ELC A;  2LBX A;  3N2G A;  3RYF A;  3JAT A;  5MN4 A;  2AIZ P;  4I50 A;  3VIU A;  2Q1Y A;  2LBW A;  5GAP K;  2HP3 A;  1KNJ A;  4O4J B;  1Q8R A;  3G6E F;  2UYJ A;  3HKC B;  1W42 A;  5GIP C;  4ZHV A;  2BTO A;  3BYQ A;  1UI9 A;  2GVI A;  1Z5V A;  3WXM B;  3P4E A;  3J7A R;  1ODE A;  5J2U B;  4IIJ B;  1VQK F;  4ZOL A;  2EWC A;  3VTI C;  2OTL F;  3M1X A;  3WPX A;  3VOA A;  4O2A A;  2FGY A;  2IQQ A;  3MCQ A;  5FJ4 C;  3ZP7 A;  5JQG B;  4O4I B;  3K0T A;  5MN6 A;  5LXT B;  3PAF A;  4KWE A;  2I6D A;  4LNU B;  4X1K B;  3OON A;  3VYS C;  3CCS F;  1JD1 A;  5EB1 B;  4ZHY B;  3E20 B;  3FFM A;  3CB2 A;  4ZI7 B;  4TUY B;  2Z1T A;  1U3P A;  1YJ9 F;  3SIU A;  2LCA A;  3TD3 A;  5EO3 A;  3ERN A;  4O4L A;  5HXZ A;  3GTZ A;  3S06 A;  3VOB A;  4DRX B;  3WPW A;  1QD9 A;  5KMG A;  4G4V A;  4IHJ B;  1QU9 A;  1W55 A;  3IKE A;  2HS0 A;  1VQ6 F;  1E7K A;  1VH8 A;  4ZHQ A;  2PHN A;  4RQO A;  4BY9 D;  4NQ3 A;  1FFX A;  3FD6 A;  2RHJ A;  3CD6 F;  5GON A;  1TVK B;  4G4Z A;  2LBT A;  1W40 A;  4EI7 A;  2ZAU A;  2ZVY A;  4EB6 B;  3HKE A;  5DCV A;  1GZ0 A;  3S03 A;  3CCQ F;  1SDS A;  5J2T A;  3IR9 A;  5LP6 A;  5LYJ A;  4X1Y B;  2H8E A;  4TZZ A;  3DDN A;  5C8Y A;  3LFO A;  1X7P A;  4TV9 A;  1UFY A;  3EOR A;  2ZOV A;  5LA6 B;  2UYN A;  4BVT A;  3C9T A;  3KJK A;  4G4X A;  2HRU A;  4ZK7 A;  1QVG F;  3RYI A;  1M1K H;  5EZY B;  1KC8 H;  1XBI A;  3F0D A;  5ITZ B;  2P6Y A;  1PXW A;  4C8G A;  4G4Y A;  1J7H A;  2BO1 A;  3JAR A;  3ZOP A;  3JAK B;  3HWU A;  2Q1X A;  3G71 F;  3LDT A;  5BMV B;  2BTQ B;  3LWO C;  2G9I A;  3J81 M;  5IJ0 B;  2IG8 A;  4B46 A;  1FNK A;  1W57 A;  1R1M A;  4I4T A;  4I50 B;  3K2X A;  3K12 A;  5IJ9 B;  4BT6 A;  3RA6 A;  1SA0 A;  3FBA A;  1H48 A;  1RQ7 A;  2GZL A;  3IEW A;  2CHT A;  4TV8 B;  5CB4 A;  3CG6 A;  5G4V C;  2ZOD A;  3VI6 A;  3U0O A;  3RYC A;  5LOV A;  2OTM A;  3CYQ A;  3CCM F;  5FNV A;  1YGY A;  4YJ2 A;  3QHD A;  3CYP B;  3WJQ A;  2F9Z C;  5JCO C;  5AVM A;  1VQ7 F;  2UZH A;  1IV3 A;  3WGL A;  4U3J A;  3I55 F;  3HKB A;  5IYZ A; 
#chains in the Genus database with same CATH homology
 2PHN A;  2G9I A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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