2PICA

E. coli lytic transglycosylase mlta-d308a in apo-2 form
Total Genus 92
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
92
sequence length
336
structure length
336
Chain Sequence
SSKPTDRGQQYKDGKFTQPFSLVNQPDAVGAPINAGDFAEQINHIRNSSPRLYGNQSNVYNAVQEWLRAGGDTRNMRQFGIDAWQMEGADNYGNVQFTGYYTPVIQARHTRQGEFQYPIYRMPPKRGRLSSRAEIYAGALSDKYILAYSNSLMDNFIMDVQGSGYIDFGDGSPLNFFSYAGKNGHAYRSIGKVIIDRGEVKKEDMSMQAIRHWGETHSEAEVRELLEQNPSFVFFKPQSFAPVKGASAVPLVGRASVASDRSIIPPGTTLLAEVPLLDNNGKFNGQYELRLMVALDVGGAIKGQHFAIYQGIGPEAGHRAGWYNHYGRVWVLKTAP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Membrane-bound lytic murein transglycosylase A
publication title Structure of Escherichia coli Lytic transglycosylase MltA with bound chitohexaose: implications for peptidoglycan binding and cleavage
pubmed doi rcsb
source organism Escherichia coli
total genus 92
structure length 336
sequence length 336
ec nomenclature ec 4.2.2.n1: Peptidoglycan lytic exotransglycosylase.
pdb deposition date 2007-04-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03562 MltA MltA specific insert domain
A PF06725 3D 3D domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.10 Mainly Beta Beta Barrel Barwin-like endoglucanases RlpA-like domain 2picA01
2.40.240.50 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Barwin-like endoglucanases 2picA02
4FG4A 4JCWA 5GM9A 2GAEA 4AVRA 4JP7A 4ENGA 1HD5A 3X2KA 2AE0X 2BH0A 2ENGA 2G6GA 2PNWA 4JP6A 3X2GA 3SUKA 3X2MA 2PI8A 5GLXA 4JS7A 2PJJA 4L48A 3X2OA 4FFTA 1OA7A 3X2LA 3SUMA 4ZM7A 1OA9A 3X2PA 5H4UA 5GLYA 3X2NA 2KQAA 1BW4A 3X2JA 1BW3A 4FERA 3X2HA 4JJOA 1L8FA 2HCZX 3D30A 3M3GA 2PICA 3X2IA 3SUJA 1N10A 3ENGA 1WC2A 3SULA 3CZBA 4FG2A 2G5DA
chains in the Genus database with same CATH superfamily
1E60A 5GM9A 3GTKA 2GAEA 2B63A 1E32A 2PJHB 1TWAA 5FTKA 4ENGA 4QIWA 2ZJQS 3HU3A 1FDOA 2BH0A 2JIPA 2V3VA 4D7ZB 1TWHA 3CF2A 5GAHW 3X2GA 3SUKA 2CW0D 1K83A 3QC8A 4AOKB 1QTQA 1Y1WA 4KODA 4AYBA 3TIWA 2KI8A 4FFTA 3FKIA 3X2LA 3SUMA 1EUQA 3X2PA 1E18A 2V45A 5FTMA 5GLYA 1PYUB 3X2NA 4DMRA 1AA6A 5GLFA 3X2JA 1BW3A 4FERA 2JA5A 1PPYA 3X2HA 1CZ5A 2JIOA 2EGWA 1YNJD 4IO9S 1L8FA 3X1LB 2NWAA 1QRUA 1H0HA 1EUYA 4WF9S 1ZJWA 4IOCS 1IW7D 5GAEW 5DYGA 1UHEA 3SUJA 4CS0A 5BNZA 1VC3B 1SIWA 2JA7A 1E61A 1WLFA 4U67S 1WC2A 3HU1A 1EXDA 4KDIA 2G5DA 1Y1VA 2JIRA 4JP7A 3DLLS 1UDXA 1DFUP 2DMRA 2G6GA 1WCMA 2PNWA 3HU2A 4WFNS 1FDIA 4P2BA 5T5ID 3AIIA 2PI8A 2YUJA 4V194 1S3SA 3CF5S 1R27A 2A6ED 2PMZA 4L48A 3X2OA 2CX8A 2RD2A 1O0CA 1PYQA 5H4UA 2HZ7A 1NYLA 1BW4A 2RE8A 4JYZA 3QQ8A 1G8JA 3GTQA 5EPPA 4JJOA 1GTRA 1PQEA 4CRYG 1B75A 2NVXA 2A68D 5FTNA 1I3QA 2VUMA 3H0GA 1N10A 1UHDA 2NVYA 3ENGA 3QWZA 1PQHA 1R7RA 1I50A 1NXZA 1AW8B 1EU1A 1TWCA 5B6CA 2YU9A 5JVGS 2NAPA 1VHKA 1R9TA 4JXZA 4JCWA 1CR5A 1SMYD 4KLNA 2WAQA 1O0BA 3TM7B 1HD5A 3DMRA 3X2KA 2AE0X 2ENGA 1Y4ZA 1YLEA 2JIMA 5FTJA 3KW2A 2JIQA 3X2MA 2Z0YA 2VPYA 5GLXA 3W2WB 2C45A 1TWFA 2PJJA 4AONB 1CZ4A 5IZNA 1PT0A 4NOHA 1OA9A 1Y5IA 3GTPA 4WFAS 2KQAA 1FEUA 3HKZA 4E8BA 5HL7S 2A6HD 1QCSA 3O5AA 4UY88 2A69D 3IR5A 1Q16A 3PIPS 3W2VB 2Y0SA 3ML1A 4H4KA 4WFBS 2E2IA 4CRZA 1QRTA 5DYIA 3M3GA 2PICA 1D6KA 4JXXA 1YNND 1PQFA 3OUGA 3GTJA 3CQZA 2ZJPS 3CZBA 5T5MD 5GAGW 4AAYA 4GA6A 1G8KA 4FG4A 1ZYRD 5DM6S 1E5VA 4AVRA 3GTMA 2R7ZA 1KQGA 3PIOS 5C18A 1GTSA 3PLXB 4JP6A 1DMRA 3QQ7A 3IR7A 4L69A 2IV2X 1TWGA 1QDNA 1V6ZA 2EEOB 2WB1A 4RV0A 2BE5D 2O5JD 4JS7A 1ZC1A 2NYAA 4GA5A 4IOAS 4KO8A 4ZM7A 5C1BA 1OA7A 1SFOA 1PT1A 2VPZA 4H3SA 5GADW 2VPWA 2R93A 4KDLA 2R92A 5DM7S 1KQFA 5JVHS 3IR6A 4C2MA 4J3CA 2HCZX 3D30A 1DMSA 1H5NA 5FTLA 1OGYA 3X2IA 3GTLA 4AZDA 1Z85A 4WCES 2E7ZA 3GTOA 1VHYA 1TMOA 2JA6A 3SULA 2EGVA 3J7ZV 3GTGA 4FG2A 1QRSA 2VPXA 2ZJRS 2E2HA
chains in the Genus database with same CATH topology
1E60A 5GM9A 3GTKA 2GAEA 2B63A 1E32A 2PJHB 1TWAA 4ENGA 5FTKA 4QIWA 3HU3A 1FDOA 2BH0A 2JIPA 2V3VA 4D7ZB 1TWHA 3CF2A 3X2GA 3SUKA 2CW0D 1K83A 3QC8A 4AOKB 1Y1WA 4KODA 4AYBA 3TIWA 2KI8A 4FFTA 3FKIA 3X2LA 3SUMA 3X2PA 1E18A 2V45A 5GLYA 3X2NA 1PYUB 5FTMA 4DMRA 1AA6A 3X2JA 1BW3A 5GLFA 4FERA 2JA5A 3X2HA 1PPYA 1CZ5A 2JIOA 1YNJD 1L8FA 1H0HA 1IW7D 3SUJA 1UHEA 5DYGA 4CS0A 1VC3B 1SIWA 2JA7A 1E61A 1WLFA 1WC2A 3HU1A 4KDIA 2G5DA 1Y1VA 4JP7A 2JIRA 2DMRA 2G6GA 2PNWA 1WCMA 3HU2A 1FDIA 5T5ID 2PI8A 2YUJA 1S3SA 4L48A 3X2OA 1R27A 2A6ED 2PMZA 1PYQA 5H4UA 1BW4A 3QQ8A 1G8JA 3GTQA 5EPPA 4JJOA 1PQEA 4CRYG 2NVXA 2A68D 5FTNA 1I3QA 2VUMA 3H0GA 1N10A 1UHDA 2NVYA 3ENGA 3QWZA 1PQHA 1R7RA 1I50A 1AW8B 1EU1A 1TWCA 5B6CA 2YU9A 2NAPA 1R9TA 4JCWA 1CR5A 1SMYD 4KLNA 2WAQA 3TM7B 1HD5A 3X2KA 3DMRA 2AE0X 2ENGA 1Y4ZA 1YLEA 2JIMA 5FTJA 2JIQA 3X2MA 2VPYA 5GLXA 2C45A 1TWFA 2PJJA 4AONB 1CZ4A 1PT0A 4NOHA 1OA9A 1Y5IA 3GTPA 2KQAA 3HKZA 2A6HD 1QCSA 3O5AA 2A69D 3IR5A 1Q16A 2Y0SA 3ML1A 2E2IA 4CRZA 5DYIA 3M3GA 2PICA 1YNND 1PQFA 3OUGA 3GTJA 3CQZA 3CZBA 5T5MD 4AAYA 4GA6A 1G8KA 4FG4A 1ZYRD 4AVRA 1E5VA 3GTMA 2R7ZA 1KQGA 5C18A 3PLXB 4JP6A 1DMRA 3QQ7A 3IR7A 2IV2X 1TWGA 1QDNA 2EEOB 2WB1A 4RV0A 2BE5D 2O5JD 4JS7A 1ZC1A 2NYAA 4GA5A 4KO8A 4ZM7A 5C1BA 1OA7A 1SFOA 1PT1A 2VPZA 2VPWA 2R93A 4KDLA 2R92A 1KQFA 3IR6A 4C2MA 2HCZX 3D30A 1DMSA 1H5NA 5FTLA 3X2IA 1OGYA 3GTLA 4AZDA 2E7ZA 3GTOA 1TMOA 2JA6A 3SULA 3GTGA 4FG2A 2VPXA 2E2HA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4FG4 A;  4JCW A;  5GM9 A;  2GAE A;  4AVR A;  4JP7 A;  4ENG A;  1HD5 A;  3X2K A;  2AE0 X;  2BH0 A;  2ENG A;  2G6G A;  2PNW A;  4JP6 A;  3X2G A;  3SUK A;  3X2M A;  2PI8 A;  5GLX A;  4JS7 A;  2PJJ A;  4L48 A;  3X2O A;  4FFT A;  1OA7 A;  3X2L A;  3SUM A;  4ZM7 A;  1OA9 A;  3X2P A;  5H4U A;  5GLY A;  3X2N A;  2KQA A;  1BW4 A;  3X2J A;  1BW3 A;  4FER A;  3X2H A;  4JJO A;  1L8F A;  2HCZ X;  3D30 A;  3M3G A;  2PIC A;  3X2I A;  3SUJ A;  1N10 A;  3ENG A;  1WC2 A;  3SUL A;  3CZB A;  4FG2 A;  2G5D A; 
#chains in the Genus database with same CATH topology
 1E60 A;  5GM9 A;  3GTK A;  2GAE A;  2B63 A;  1E32 A;  2PJH B;  1TWA A;  5FTK A;  4ENG A;  4QIW A;  2ZJQ S;  3HU3 A;  1FDO A;  2BH0 A;  2JIP A;  2V3V A;  4D7Z B;  1TWH A;  3CF2 A;  5GAH W;  3X2G A;  3SUK A;  2CW0 D;  1K83 A;  3QC8 A;  4AOK B;  1QTQ A;  1Y1W A;  4KOD A;  4AYB A;  3TIW A;  2KI8 A;  4FFT A;  3FKI A;  3X2L A;  3SUM A;  1EUQ A;  3X2P A;  1E18 A;  2V45 A;  5FTM A;  5GLY A;  1PYU B;  3X2N A;  4DMR A;  1AA6 A;  5GLF A;  3X2J A;  1BW3 A;  4FER A;  2JA5 A;  1PPY A;  3X2H A;  1CZ5 A;  2JIO A;  2EGW A;  1YNJ D;  4IO9 S;  1L8F A;  3X1L B;  2NWA A;  1QRU A;  1H0H A;  1EUY A;  4WF9 S;  1ZJW A;  4IOC S;  1IW7 D;  5GAE W;  5DYG A;  1UHE A;  3SUJ A;  4CS0 A;  5BNZ A;  1VC3 B;  1SIW A;  2JA7 A;  1E61 A;  1WLF A;  4U67 S;  1WC2 A;  3HU1 A;  1EXD A;  4KDI A;  2G5D A;  1Y1V A;  2JIR A;  4JP7 A;  3DLL S;  1UDX A;  1DFU P;  2DMR A;  2G6G A;  1WCM A;  2PNW A;  3HU2 A;  4WFN S;  1FDI A;  4P2B A;  5T5I D;  3AII A;  2PI8 A;  2YUJ A;  4V19 4;  1S3S A;  3CF5 S;  1R27 A;  2A6E D;  2PMZ A;  4L48 A;  3X2O A;  2CX8 A;  2RD2 A;  1O0C A;  1PYQ A;  5H4U A;  2HZ7 A;  1NYL A;  1BW4 A;  2RE8 A;  4JYZ A;  3QQ8 A;  1G8J A;  3GTQ A;  5EPP A;  4JJO A;  1GTR A;  1PQE A;  4CRY G;  1B75 A;  2NVX A;  2A68 D;  5FTN A;  1I3Q A;  2VUM A;  3H0G A;  1N10 A;  1UHD A;  2NVY A;  3ENG A;  3QWZ A;  1PQH A;  1R7R A;  1I50 A;  1NXZ A;  1AW8 B;  1EU1 A;  1TWC A;  5B6C A;  2YU9 A;  5JVG S;  2NAP A;  1VHK A;  1R9T A;  4JXZ A;  4JCW A;  1CR5 A;  1SMY D;  4KLN A;  2WAQ A;  1O0B A;  3TM7 B;  1HD5 A;  3DMR A;  3X2K A;  2AE0 X;  2ENG A;  1Y4Z A;  1YLE A;  2JIM A;  5FTJ A;  3KW2 A;  2JIQ A;  3X2M A;  2Z0Y A;  2VPY A;  5GLX A;  3W2W B;  2C45 A;  1TWF A;  2PJJ A;  4AON B;  1CZ4 A;  5IZN A;  1PT0 A;  4NOH A;  1OA9 A;  1Y5I A;  3GTP A;  4WFA S;  2KQA A;  1FEU A;  3HKZ A;  4E8B A;  5HL7 S;  2A6H D;  1QCS A;  3O5A A;  4UY8 8;  2A69 D;  3IR5 A;  1Q16 A;  3PIP S;  3W2V B;  2Y0S A;  3ML1 A;  4H4K A;  4WFB S;  2E2I A;  4CRZ A;  1QRT A;  5DYI A;  3M3G A;  2PIC A;  1D6K A;  4JXX A;  1YNN D;  1PQF A;  3OUG A;  3GTJ A;  3CQZ A;  2ZJP S;  3CZB A;  5T5M D;  5GAG W;  4AAY A;  4GA6 A;  1G8K A;  4FG4 A;  1ZYR D;  5DM6 S;  1E5V A;  4AVR A;  3GTM A;  2R7Z A;  1KQG A;  3PIO S;  5C18 A;  1GTS A;  3PLX B;  4JP6 A;  1DMR A;  3QQ7 A;  3IR7 A;  4L69 A;  2IV2 X;  1TWG A;  1QDN A;  1V6Z A;  2EEO B;  2WB1 A;  4RV0 A;  2BE5 D;  2O5J D;  4JS7 A;  1ZC1 A;  2NYA A;  4GA5 A;  4IOA S;  4KO8 A;  4ZM7 A;  5C1B A;  1OA7 A;  1SFO A;  1PT1 A;  2VPZ A;  4H3S A;  5GAD W;  2VPW A;  2R93 A;  4KDL A;  2R92 A;  5DM7 S;  1KQF A;  5JVH S;  3IR6 A;  4C2M A;  4J3C A;  2HCZ X;  3D30 A;  1DMS A;  1H5N A;  5FTL A;  1OGY A;  3X2I A;  3GTL A;  4AZD A;  1Z85 A;  4WCE S;  2E7Z A;  3GTO A;  1VHY A;  1TMO A;  2JA6 A;  3SUL A;  2EGV A;  3J7Z V;  3GTG A;  4FG2 A;  1QRS A;  2VPX A;  2ZJR S;  2E2H A; 
#chains in the Genus database with same CATH homology
 1E60 A;  5GM9 A;  3GTK A;  2GAE A;  2B63 A;  1E32 A;  2PJH B;  1TWA A;  4ENG A;  5FTK A;  4QIW A;  3HU3 A;  1FDO A;  2BH0 A;  2JIP A;  2V3V A;  4D7Z B;  1TWH A;  3CF2 A;  3X2G A;  3SUK A;  2CW0 D;  1K83 A;  3QC8 A;  4AOK B;  1Y1W A;  4KOD A;  4AYB A;  3TIW A;  2KI8 A;  4FFT A;  3FKI A;  3X2L A;  3SUM A;  3X2P A;  1E18 A;  2V45 A;  5GLY A;  3X2N A;  1PYU B;  5FTM A;  4DMR A;  1AA6 A;  3X2J A;  1BW3 A;  5GLF A;  4FER A;  2JA5 A;  3X2H A;  1PPY A;  1CZ5 A;  2JIO A;  1YNJ D;  1L8F A;  1H0H A;  1IW7 D;  3SUJ A;  1UHE A;  5DYG A;  4CS0 A;  1VC3 B;  1SIW A;  2JA7 A;  1E61 A;  1WLF A;  1WC2 A;  3HU1 A;  4KDI A;  2G5D A;  1Y1V A;  4JP7 A;  2JIR A;  2DMR A;  2G6G A;  2PNW A;  1WCM A;  3HU2 A;  1FDI A;  5T5I D;  2PI8 A;  2YUJ A;  1S3S A;  4L48 A;  3X2O A;  1R27 A;  2A6E D;  2PMZ A;  1PYQ A;  5H4U A;  1BW4 A;  3QQ8 A;  1G8J A;  3GTQ A;  5EPP A;  4JJO A;  1PQE A;  4CRY G;  2NVX A;  2A68 D;  5FTN A;  1I3Q A;  2VUM A;  3H0G A;  1N10 A;  1UHD A;  2NVY A;  3ENG A;  3QWZ A;  1PQH A;  1R7R A;  1I50 A;  1AW8 B;  1EU1 A;  1TWC A;  5B6C A;  2YU9 A;  2NAP A;  1R9T A;  4JCW A;  1CR5 A;  1SMY D;  4KLN A;  2WAQ A;  3TM7 B;  1HD5 A;  3X2K A;  3DMR A;  2AE0 X;  2ENG A;  1Y4Z A;  1YLE A;  2JIM A;  5FTJ A;  2JIQ A;  3X2M A;  2VPY A;  5GLX A;  2C45 A;  1TWF A;  2PJJ A;  4AON B;  1CZ4 A;  1PT0 A;  4NOH A;  1OA9 A;  1Y5I A;  3GTP A;  2KQA A;  3HKZ A;  2A6H D;  1QCS A;  3O5A A;  2A69 D;  3IR5 A;  1Q16 A;  2Y0S A;  3ML1 A;  2E2I A;  4CRZ A;  5DYI A;  3M3G A;  2PIC A;  1YNN D;  1PQF A;  3OUG A;  3GTJ A;  3CQZ A;  3CZB A;  5T5M D;  4AAY A;  4GA6 A;  1G8K A;  4FG4 A;  1ZYR D;  4AVR A;  1E5V A;  3GTM A;  2R7Z A;  1KQG A;  5C18 A;  3PLX B;  4JP6 A;  1DMR A;  3QQ7 A;  3IR7 A;  2IV2 X;  1TWG A;  1QDN A;  2EEO B;  2WB1 A;  4RV0 A;  2BE5 D;  2O5J D;  4JS7 A;  1ZC1 A;  2NYA A;  4GA5 A;  4KO8 A;  4ZM7 A;  5C1B A;  1OA7 A;  1SFO A;  1PT1 A;  2VPZ A;  2VPW A;  2R93 A;  4KDL A;  2R92 A;  1KQF A;  3IR6 A;  4C2M A;  2HCZ X;  3D30 A;  1DMS A;  1H5N A;  5FTL A;  3X2I A;  1OGY A;  3GTL A;  4AZD A;  2E7Z A;  3GTO A;  1TMO A;  2JA6 A;  3SUL A;  3GTG A;  4FG2 A;  2VPX A;  2E2H A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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