The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
32
|
sequence length |
132
|
structure length |
132
|
Chain Sequence |
GAHMAGGRSWCLRRVGMSAGWLLLEDGCEVTVGRGFGVTYQLVSKICPLMISRNHCVLKQNPEGQWTIMDNKSLNGVWLNRARLEPLRVYSIHQGDYIQLGVPLENKENAEYEYEVTEEDWETIYPCLSPKN
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Ligase
|
| molecule keywords |
E3 ubiquitin-protein ligase RNF8
|
| publication title |
RNF8 Transduces the DNA-Damage Signal via Histone Ubiquitylation and Checkpoint Protein Assembly.
pubmed doi rcsb |
| source organism |
Homo sapiens
|
| total genus |
32
|
| structure length |
132
|
| sequence length |
132
|
| ec nomenclature |
ec
2.3.2.27: RING-type E3 ubiquitin transferase. |
| pdb deposition date | 2007-04-13 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00498 | FHA | FHA domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Sandwich | Tumour Suppressor Smad4 | Tumour Suppressor Smad4 |
#chains in the Genus database with same CATH superfamily 1R21 A; 3VA1 A; 3FM8 A; 1G6G A; 3I6U A; 3VA4 A; 2G1L A; 1LGP A; 3ELV A; 1WV3 A; 3I0M A; 4QCJ A; 1J4Q A; 2FEZ A; 1K2M A; 2XT9 B; 2LC1 A; 1YJ5 C; 3HUF A; 2W3O A; 3MDB A; 3UOT A; 4A0E A; 4JON A; 3I6W A; 3UV0 A; 4EJQ A; 1J4L A; 3UMZ A; 1G3G A; 2A0T A; 2EH0 A; 1LGQ A; 1UHT A; 2KFU A; 1UJX A; 4D9V A; 3OUN A; 2KKL A; 4G2S A; 1WLN A; 1MZK A; 3HX1 A; 2FF4 A; 2JPE A; 1K3J A; 2CSW A; 2JQL A; 3I0N A; 1K2N A; 1QU5 A; 1J4K A; 3HUE A; 2AFF A; 1K3Q A; 2PIE A; 2KB4 A; 3POA A; 5E50 A; 3VPY A; 3UNM A; 2JQI A; 4EGX A; 1FHQ A; 1K3N A; 3KT9 A; 1J4O A; 3ELS A; 2JKD A; 2JQJ A; 2KB3 A; 1GXC A; 1DMZ A; 1YJM A; 4H87 A; 5A8I A; 2BRF A; 3GQS A; 5DJO A; 1FHR A; 1J4P A; 3PO8 A; 3UNN A; 3UN0 A; #chains in the Genus database with same CATH topology 1R21 A; 2I29 A; 3V8N A; 3VA1 A; 3FM8 A; 1G6G A; 4JIV D; 3I6U A; 3DIT A; 3VA4 A; 1MJS A; 2G1L A; 5DHP A; 4WER A; 3S40 A; 1LGP A; 1YT5 A; 3ELV A; 1MR1 A; 1KHU A; 2QVL A; 5BVI A; 4V24 A; 2Q5F A; 1WV3 A; 5JEL A; 1KHX A; 3I0M A; 4QCJ A; 1J4Q A; 2FEZ A; 5JER A; 1K2M A; 3V8Q A; 2XT9 B; 2LC1 A; 5DHU A; 1YJ5 C; 1U7V B; 3HUF A; 3V7Y A; 2W3O A; 1Y3I A; 3MDB A; 2BON A; 3VZB A; 4KU0 D; 3PFN A; 5EJI A; 3UOT A; 4A0E A; 1SUW A; 4JON A; 4R9P A; 1MK2 A; 5JEJ A; 2I2C A; 3V80 A; 1U7F B; 5JEK A; 3I6W A; 5EJG A; 3UV0 A; 1Z0Z A; 3V8P A; 4EJQ A; 1J4L A; 2I2F A; 4L02 A; 3UMZ A; 1G3G A; 2A0T A; 3V7W A; 1YGS A; 5DHT A; 2EH0 A; 1LGQ A; 1UHT A; 2KFU A; 4JIW D; 1UJX A; 3T5P A; 5DHQ A; 4D9V A; 3OUN A; 3AFO A; 2KKL A; 4G2S A; 1WLN A; 2I1W A; 1MZK A; 2I2B A; 5JEO A; 3HX1 A; 2FF4 A; 2JPE A; 3V7U A; 3V8R A; 1K3J A; 2CSW A; 2P1R A; 4WRR A; 2JQL A; 2XXS A; 3I0N A; 2AN1 A; 3VZD A; 1K2N A; 2JGR A; 1U7V A; 1QU5 A; 4A4Y A; 3GMJ A; 1J4K A; 3DSH A; 3A77 A; 1Z0S A; 3HUE A; 1U7F A; 2I2D A; 2AFF A; 5C4V A; 4DY6 A; 1K3Q A; 2PIE A; 3V8M A; 2KB4 A; 3POA A; 5JEM A; 1U0T A; 5E50 A; 5DHS A; 3VPY A; 1DD1 A; 1G88 A; 3UNM A; 2JQI A; 5DHR A; 4EGX A; 1FHQ A; 1K3N A; 3KT9 A; 1J4O A; 3ELS A; 2JKD A; 2JQJ A; 2KB3 A; 1GXC A; 4HAO A; 1DMZ A; 1YJM A; 4H87 A; 5A8I A; 2BRF A; 1J2F A; 2QV7 A; 1QWT A; 3GQS A; 1ZOQ A; 1DEV A; 5DJO A; 1FHR A; 3VZC A; 1U0R A; 1J4P A; 3PO8 A; 5EJF A; 1Y3H A; 2I2A A; 5EJH A; 3UNN A; 1Z0U A; 3UN0 A; #chains in the Genus database with same CATH homology 1R21 A; 3VA1 A; 3FM8 A; 1G6G A; 4JIV D; 3I6U A; 3DIT A; 3VA4 A; 1MJS A; 2G1L A; 4WER A; 3S40 A; 1LGP A; 3ELV A; 1MR1 A; 1KHU A; 2QVL A; 5BVI A; 4V24 A; 1WV3 A; 5JEL A; 1KHX A; 3I0M A; 4QCJ A; 1J4Q A; 2FEZ A; 5JER A; 1K2M A; 2XT9 B; 2LC1 A; 1YJ5 C; 1U7V B; 3HUF A; 2W3O A; 3MDB A; 2BON A; 3VZB A; 4KU0 D; 3UOT A; 4A0E A; 4JON A; 4R9P A; 1MK2 A; 5JEJ A; 1U7F B; 5JEK A; 3I6W A; 3UV0 A; 4EJQ A; 1J4L A; 4L02 A; 3UMZ A; 1G3G A; 2A0T A; 1YGS A; 2EH0 A; 1LGQ A; 1UHT A; 2KFU A; 4JIW D; 1UJX A; 3T5P A; 4D9V A; 3OUN A; 2KKL A; 4G2S A; 1WLN A; 5JEO A; 1MZK A; 3HX1 A; 2FF4 A; 2JPE A; 1K3J A; 2CSW A; 2P1R A; 4WRR A; 2JQL A; 2XXS A; 3I0N A; 3VZD A; 1K2N A; 2JGR A; 1U7V A; 1QU5 A; 4A4Y A; 3GMJ A; 1J4K A; 3DSH A; 3A77 A; 3HUE A; 1U7F A; 2AFF A; 5C4V A; 1K3Q A; 2PIE A; 2KB4 A; 3POA A; 5JEM A; 5E50 A; 3VPY A; 1DD1 A; 1G88 A; 3UNM A; 2JQI A; 4EGX A; 1FHQ A; 1K3N A; 3KT9 A; 1J4O A; 3ELS A; 2JKD A; 2JQJ A; 2KB3 A; 1GXC A; 1DMZ A; 1YJM A; 4H87 A; 5A8I A; 2BRF A; 1J2F A; 2QV7 A; 1QWT A; 3GQS A; 1ZOQ A; 1DEV A; 5DJO A; 1FHR A; 3VZC A; 1J4P A; 3PO8 A; 3UNN A; 3UN0 A;
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