2PJJA

E. coli lytic transglycosylase mlta-d308a in apo-1 form
Total Genus 94
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
94
sequence length
335
structure length
335
Chain Sequence
SKPTDRGQQYKDGKFTQPFSLVNQPDAVGAPINAGDFAEQINHIRNSSPRLYGNQSNVYNAVQEWLRAGGDTRNMRQFGIDAWQMEGADNYGNVQFTGYYTPVIQARHTRQGEFQYPIYRMPPKRGRLSSRAEIYAGALSDKYILAYSNSLMDNFIMDVQGSGYIDFGDGSPLNFFSYAGKNGHAYRSIGKVLIDRGEVKKEDMSMQAIRHWGETHSEAEVRELLEQNPSFVFFKPQSFAPVKGASAVPLVGRASVASDRSIIPPGTTLLAEVPLLDNNGKFNGQYELRLMVALDVGGAIKGQHFAIYQGIGPEAGHRAGWYNHYGRVWVLKTAP
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Hydrolase
molecule keywords Membrane-bound lytic murein transglycosylase A
publication title Structure of Escherichia coli Lytic transglycosylase MltA with bound chitohexaose: implications for peptidoglycan binding and cleavage
pubmed doi rcsb
source organism Escherichia coli
total genus 94
structure length 335
sequence length 335
ec nomenclature ec 4.2.2.n1: Peptidoglycan lytic exotransglycosylase.
pdb deposition date 2007-04-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03562 MltA MltA specific insert domain
A PF06725 3D 3D domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.10 Mainly Beta Beta Barrel Barwin-like endoglucanases RlpA-like domain 2pjjA01
2.40.240.50 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Barwin-like endoglucanases 2pjjA02
2G6GA 4JP7A 1N10A 2PICA 3D30A 4JJOA 4FERA 3X2LA 4AVRA 4ZM7A 3X2PA 5H4UA 3SULA 3X2IA 1OA9A 3X2MA 3CZBA 2G5DA 1WC2A 2KQAA 4FG4A 3X2NA 2PJJA 1HD5A 2ENGA 2AE0X 1OA7A 4FG2A 4L48A 3SUKA 5GLYA 3X2HA 3X2JA 5GM9A 1BW3A 2PI8A 2GAEA 2PNWA 3SUMA 3SUJA 3X2GA 3M3GA 3X2OA 4JCWA 4ENGA 3X2KA 2BH0A 1BW4A 4JS7A 4FFTA 2HCZX 3ENGA 4JP6A 1L8FA 5GLXA
chains in the Genus database with same CATH superfamily
3OUGA 1N10A 1TWAA 3GTKA 5FTLA 1B75A 4JXZA 3QC8A 4NOHA 4FERA 5T5ID 4AVRA 3HU1A 2EGWA 1VHYA 1EXDA 1FDIA 4E8BA 1YLEA 1Y1VA 1QDNA 1UHEA 4KDIA 1TMOA 1PQHA 2KQAA 2YUJA 5FTJA 4WFNS 1PYQA 4FG4A 2JA6A 1D6KA 2AE0X 2ENGA 1PT1A 1I50A 1S3SA 4L48A 4AZDA 2JIOA 2JA7A 5GM9A 3GTLA 1WCMA 1SIWA 2PMZA 1H0HA 3J7ZV 1QTQA 2ZJQS 3W2WB 2JIQA 2NVXA 2E2IA 5JVGS 2Y0SA 3M3GA 4WCES 4CRZA 1WLFA 2BH0A 3HKZA 1H5NA 2A69D 5DM7S 5DM6S 2ZJPS 1FEUA 1TWHA 2A6ED 5C18A 5GAEW 1UHDA 2CX8A 2VPXA 2R93A 1VHKA 5BNZA 2NAPA 4H4KA 4H3SA 2ZJRS 2PICA 4JJOA 2B63A 3QQ8A 3IR7A 1V6ZA 3FKIA 1R7RA 1Q16A 3X2LA 3X2PA 1ZJWA 4KDLA 4KO8A 5H4UA 2EGVA 3X2IA 1OA9A 3X2MA 1PQEA 2E7ZA 2NVYA 1K83A 2G5DA 4CRYG 3TIWA 3GTOA 5HL7S 2R92A 1TWFA 1NXZA 1G8KA 1PT0A 2PJJA 5DYGA 2IV2X 1O0CA 1ZYRD 2EEOB 2VPWA 4RV0A 2Z0YA 3SUKA 2PJHB 1AW8B 3X2HA 3X2JA 1DMSA 4AOKB 1Z85A 3H0GA 2RD2A 1TWCA 3KW2A 1SFOA 4WF9S 1E61A 2YU9A 1GTSA 2V45A 3PIPS 1CZ4A 3SUMA 3GTPA 5JVHS 3W2VB 1E32A 4AAYA 4ENGA 1KQFA 3PLXB 4IO9S 1OGYA 4CS0A 1YNJD 1BW4A 4FFTA 3HU3A 4AONB 4L69A 1R27A 2HCZX 1IW7D 2JIRA 3ENGA 5B6CA 1PQFA 1QRTA 2WB1A 1DFUP 1ZC1A 4JP7A 1TWGA 5FTMA 4D7ZB 2WAQA 1QRSA 5DYIA 1KQGA 3GTJA 1Y4ZA 4JYZA 1QCSA 4V194 2BE5D 3CZBA 2O5JD 4IOAS 1SMYD 1WC2A 1R9TA 3CQZA 2VUMA 3X2NA 1E60A 3IR6A 2CW0D 4P2BA 4DMRA 1FDOA 1EUQA 4FG2A 1O0BA 1BW3A 1E5VA 2VPYA 3AIIA 3X1LB 1PPYA 1VC3B 1GTRA 2PI8A 5FTNA 2PNWA 3SUJA 2JA5A 2NYAA 2JIMA 2HZ7A 3X2OA 4JCWA 5T5MD 5GAHW 3CF5S 1CR5A 1AA6A 2R7ZA 4QIWA 5C1BA 3GTGA 1NYLA 4WFBS 4JP6A 1L8FA 5GLXA 4U67S 2G6GA 4UY88 2KI8A 4JXXA 5FTKA 3D30A 2C45A 3QQ7A 1YNND 4C2MA 2RE8A 2JIPA 4ZM7A 3SULA 2A68D 3ML1A 4GA6A 5EPPA 5IZNA 2DMRA 1EU1A 3DMRA 1UDXA 2NWAA 1EUYA 5GAGW 5GADW 1HD5A 4KLNA 4GA5A 3QWZA 3TM7B 1Y1WA 1OA7A 5GLYA 3GTMA 2E2HA 3IR5A 3O5AA 4AYBA 1CZ5A 1QRUA 1DMRA 3CF2A 1PYUB 5GLFA 2GAEA 4IOCS 1Y5IA 4KODA 3X2GA 1E18A 4J3CA 2V3VA 2VPZA 3X2KA 3DLLS 1I3QA 4WFAS 3GTQA 1G8JA 2A6HD 3HU2A 4JS7A 3PIOS
chains in the Genus database with same CATH topology
3OUGA 1N10A 1TWAA 3GTKA 5FTLA 3QC8A 4NOHA 4FERA 5T5ID 4AVRA 3HU1A 1FDIA 1YLEA 1Y1VA 1QDNA 1UHEA 4KDIA 1TMOA 2KQAA 1PQHA 2YUJA 5FTJA 4FG4A 1PYQA 2JA6A 2ENGA 2AE0X 1PT1A 1I50A 1S3SA 4L48A 4AZDA 2JIOA 2JA7A 5GM9A 3GTLA 1WCMA 1SIWA 2PMZA 1H0HA 2JIQA 2NVXA 2E2IA 2Y0SA 3M3GA 4CRZA 2BH0A 1WLFA 3HKZA 1H5NA 2A69D 1TWHA 2A6ED 5C18A 1UHDA 2VPXA 2R93A 2NAPA 2PICA 4JJOA 2B63A 3QQ8A 3IR7A 3FKIA 3X2LA 1R7RA 1Q16A 3X2PA 5H4UA 4KDLA 4KO8A 3X2IA 1OA9A 3X2MA 1PQEA 2E7ZA 2NVYA 1K83A 2G5DA 4CRYG 3TIWA 3GTOA 2R92A 1TWFA 1G8KA 2PJJA 1PT0A 5DYGA 2IV2X 1ZYRD 2EEOB 2VPWA 4RV0A 3SUKA 2PJHB 3X2HA 3X2JA 1AW8B 1DMSA 4AOKB 3H0GA 1TWCA 1SFOA 1E61A 2YU9A 2V45A 1CZ4A 3SUMA 3GTPA 1E32A 4AAYA 4ENGA 1KQFA 3PLXB 1OGYA 4CS0A 1YNJD 1BW4A 3HU3A 4AONB 1R27A 1IW7D 2HCZX 2JIRA 3ENGA 5B6CA 1PQFA 2WB1A 4JP7A 1ZC1A 1TWGA 5FTMA 4D7ZB 2WAQA 5DYIA 1KQGA 3GTJA 1Y4ZA 1QCSA 2BE5D 3CZBA 2O5JD 1SMYD 1WC2A 1R9TA 3CQZA 2VUMA 3X2NA 1E60A 3IR6A 2CW0D 4DMRA 1FDOA 4FG2A 1BW3A 1E5VA 2VPYA 1PPYA 1VC3B 2PI8A 5FTNA 2PNWA 3SUJA 2JA5A 2NYAA 2JIMA 3HU2A 3X2OA 4JCWA 5T5MD 1CR5A 1AA6A 2R7ZA 4QIWA 5C1BA 3GTGA 4JP6A 1L8FA 5GLXA 2G6GA 2KI8A 5FTKA 3D30A 2C45A 3QQ7A 1YNND 4C2MA 2JIPA 4ZM7A 3SULA 2A68D 3ML1A 4GA6A 5EPPA 2DMRA 1EU1A 3DMRA 1HD5A 4KLNA 4GA5A 3QWZA 3TM7B 1Y1WA 1OA7A 5GLYA 3GTMA 2E2HA 3IR5A 3O5AA 4AYBA 1CZ5A 1DMRA 3CF2A 1PYUB 5GLFA 2GAEA 1Y5IA 3X2GA 4KODA 1E18A 2V3VA 2VPZA 3X2KA 1I3QA 3GTQA 1G8JA 4JS7A 4FFTA 2A6HD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2G6G A;  4JP7 A;  1N10 A;  2PIC A;  3D30 A;  4JJO A;  4FER A;  3X2L A;  4AVR A;  4ZM7 A;  3X2P A;  5H4U A;  3SUL A;  3X2I A;  1OA9 A;  3X2M A;  3CZB A;  2G5D A;  1WC2 A;  2KQA A;  4FG4 A;  3X2N A;  2PJJ A;  1HD5 A;  2ENG A;  2AE0 X;  1OA7 A;  4FG2 A;  4L48 A;  3SUK A;  5GLY A;  3X2H A;  3X2J A;  5GM9 A;  1BW3 A;  2PI8 A;  2GAE A;  2PNW A;  3SUM A;  3SUJ A;  3X2G A;  3M3G A;  3X2O A;  4JCW A;  4ENG A;  3X2K A;  2BH0 A;  1BW4 A;  4JS7 A;  4FFT A;  2HCZ X;  3ENG A;  4JP6 A;  1L8F A;  5GLX A; 
#chains in the Genus database with same CATH topology
 3OUG A;  1N10 A;  1TWA A;  3GTK A;  5FTL A;  1B75 A;  4JXZ A;  3QC8 A;  4NOH A;  4FER A;  5T5I D;  4AVR A;  3HU1 A;  2EGW A;  1VHY A;  1EXD A;  1FDI A;  4E8B A;  1YLE A;  1Y1V A;  1QDN A;  1UHE A;  4KDI A;  1TMO A;  1PQH A;  2KQA A;  2YUJ A;  5FTJ A;  4WFN S;  1PYQ A;  4FG4 A;  2JA6 A;  1D6K A;  2AE0 X;  2ENG A;  1PT1 A;  1I50 A;  1S3S A;  4L48 A;  4AZD A;  2JIO A;  2JA7 A;  5GM9 A;  3GTL A;  1WCM A;  1SIW A;  2PMZ A;  1H0H A;  3J7Z V;  1QTQ A;  2ZJQ S;  3W2W B;  2JIQ A;  2NVX A;  2E2I A;  5JVG S;  2Y0S A;  3M3G A;  4WCE S;  4CRZ A;  1WLF A;  2BH0 A;  3HKZ A;  1H5N A;  2A69 D;  5DM7 S;  5DM6 S;  2ZJP S;  1FEU A;  1TWH A;  2A6E D;  5C18 A;  5GAE W;  1UHD A;  2CX8 A;  2VPX A;  2R93 A;  1VHK A;  5BNZ A;  2NAP A;  4H4K A;  4H3S A;  2ZJR S;  2PIC A;  4JJO A;  2B63 A;  3QQ8 A;  3IR7 A;  1V6Z A;  3FKI A;  1R7R A;  1Q16 A;  3X2L A;  3X2P A;  1ZJW A;  4KDL A;  4KO8 A;  5H4U A;  2EGV A;  3X2I A;  1OA9 A;  3X2M A;  1PQE A;  2E7Z A;  2NVY A;  1K83 A;  2G5D A;  4CRY G;  3TIW A;  3GTO A;  5HL7 S;  2R92 A;  1TWF A;  1NXZ A;  1G8K A;  1PT0 A;  2PJJ A;  5DYG A;  2IV2 X;  1O0C A;  1ZYR D;  2EEO B;  2VPW A;  4RV0 A;  2Z0Y A;  3SUK A;  2PJH B;  1AW8 B;  3X2H A;  3X2J A;  1DMS A;  4AOK B;  1Z85 A;  3H0G A;  2RD2 A;  1TWC A;  3KW2 A;  1SFO A;  4WF9 S;  1E61 A;  2YU9 A;  1GTS A;  2V45 A;  3PIP S;  1CZ4 A;  3SUM A;  3GTP A;  5JVH S;  3W2V B;  1E32 A;  4AAY A;  4ENG A;  1KQF A;  3PLX B;  4IO9 S;  1OGY A;  4CS0 A;  1YNJ D;  1BW4 A;  4FFT A;  3HU3 A;  4AON B;  4L69 A;  1R27 A;  2HCZ X;  1IW7 D;  2JIR A;  3ENG A;  5B6C A;  1PQF A;  1QRT A;  2WB1 A;  1DFU P;  1ZC1 A;  4JP7 A;  1TWG A;  5FTM A;  4D7Z B;  2WAQ A;  1QRS A;  5DYI A;  1KQG A;  3GTJ A;  1Y4Z A;  4JYZ A;  1QCS A;  4V19 4;  2BE5 D;  3CZB A;  2O5J D;  4IOA S;  1SMY D;  1WC2 A;  1R9T A;  3CQZ A;  2VUM A;  3X2N A;  1E60 A;  3IR6 A;  2CW0 D;  4P2B A;  4DMR A;  1FDO A;  1EUQ A;  4FG2 A;  1O0B A;  1BW3 A;  1E5V A;  2VPY A;  3AII A;  3X1L B;  1PPY A;  1VC3 B;  1GTR A;  2PI8 A;  5FTN A;  2PNW A;  3SUJ A;  2JA5 A;  2NYA A;  2JIM A;  2HZ7 A;  3X2O A;  4JCW A;  5T5M D;  5GAH W;  3CF5 S;  1CR5 A;  1AA6 A;  2R7Z A;  4QIW A;  5C1B A;  3GTG A;  1NYL A;  4WFB S;  4JP6 A;  1L8F A;  5GLX A;  4U67 S;  2G6G A;  4UY8 8;  2KI8 A;  4JXX A;  5FTK A;  3D30 A;  2C45 A;  3QQ7 A;  1YNN D;  4C2M A;  2RE8 A;  2JIP A;  4ZM7 A;  3SUL A;  2A68 D;  3ML1 A;  4GA6 A;  5EPP A;  5IZN A;  2DMR A;  1EU1 A;  3DMR A;  1UDX A;  2NWA A;  1EUY A;  5GAG W;  5GAD W;  1HD5 A;  4KLN A;  4GA5 A;  3QWZ A;  3TM7 B;  1Y1W A;  1OA7 A;  5GLY A;  3GTM A;  2E2H A;  3IR5 A;  3O5A A;  4AYB A;  1CZ5 A;  1QRU A;  1DMR A;  3CF2 A;  1PYU B;  5GLF A;  2GAE A;  4IOC S;  1Y5I A;  4KOD A;  3X2G A;  1E18 A;  4J3C A;  2V3V A;  2VPZ A;  3X2K A;  3DLL S;  1I3Q A;  4WFA S;  3GTQ A;  1G8J A;  2A6H D;  3HU2 A;  4JS7 A;  3PIO S; 
#chains in the Genus database with same CATH homology
 3OUG A;  1N10 A;  1TWA A;  3GTK A;  5FTL A;  3QC8 A;  4NOH A;  4FER A;  5T5I D;  4AVR A;  3HU1 A;  1FDI A;  1YLE A;  1Y1V A;  1QDN A;  1UHE A;  4KDI A;  1TMO A;  2KQA A;  1PQH A;  2YUJ A;  5FTJ A;  4FG4 A;  1PYQ A;  2JA6 A;  2ENG A;  2AE0 X;  1PT1 A;  1I50 A;  1S3S A;  4L48 A;  4AZD A;  2JIO A;  2JA7 A;  5GM9 A;  3GTL A;  1WCM A;  1SIW A;  2PMZ A;  1H0H A;  2JIQ A;  2NVX A;  2E2I A;  2Y0S A;  3M3G A;  4CRZ A;  2BH0 A;  1WLF A;  3HKZ A;  1H5N A;  2A69 D;  1TWH A;  2A6E D;  5C18 A;  1UHD A;  2VPX A;  2R93 A;  2NAP A;  2PIC A;  4JJO A;  2B63 A;  3QQ8 A;  3IR7 A;  3FKI A;  3X2L A;  1R7R A;  1Q16 A;  3X2P A;  5H4U A;  4KDL A;  4KO8 A;  3X2I A;  1OA9 A;  3X2M A;  1PQE A;  2E7Z A;  2NVY A;  1K83 A;  2G5D A;  4CRY G;  3TIW A;  3GTO A;  2R92 A;  1TWF A;  1G8K A;  2PJJ A;  1PT0 A;  5DYG A;  2IV2 X;  1ZYR D;  2EEO B;  2VPW A;  4RV0 A;  3SUK A;  2PJH B;  3X2H A;  3X2J A;  1AW8 B;  1DMS A;  4AOK B;  3H0G A;  1TWC A;  1SFO A;  1E61 A;  2YU9 A;  2V45 A;  1CZ4 A;  3SUM A;  3GTP A;  1E32 A;  4AAY A;  4ENG A;  1KQF A;  3PLX B;  1OGY A;  4CS0 A;  1YNJ D;  1BW4 A;  3HU3 A;  4AON B;  1R27 A;  1IW7 D;  2HCZ X;  2JIR A;  3ENG A;  5B6C A;  1PQF A;  2WB1 A;  4JP7 A;  1ZC1 A;  1TWG A;  5FTM A;  4D7Z B;  2WAQ A;  5DYI A;  1KQG A;  3GTJ A;  1Y4Z A;  1QCS A;  2BE5 D;  3CZB A;  2O5J D;  1SMY D;  1WC2 A;  1R9T A;  3CQZ A;  2VUM A;  3X2N A;  1E60 A;  3IR6 A;  2CW0 D;  4DMR A;  1FDO A;  4FG2 A;  1BW3 A;  1E5V A;  2VPY A;  1PPY A;  1VC3 B;  2PI8 A;  5FTN A;  2PNW A;  3SUJ A;  2JA5 A;  2NYA A;  2JIM A;  3HU2 A;  3X2O A;  4JCW A;  5T5M D;  1CR5 A;  1AA6 A;  2R7Z A;  4QIW A;  5C1B A;  3GTG A;  4JP6 A;  1L8F A;  5GLX A;  2G6G A;  2KI8 A;  5FTK A;  3D30 A;  2C45 A;  3QQ7 A;  1YNN D;  4C2M A;  2JIP A;  4ZM7 A;  3SUL A;  2A68 D;  3ML1 A;  4GA6 A;  5EPP A;  2DMR A;  1EU1 A;  3DMR A;  1HD5 A;  4KLN A;  4GA5 A;  3QWZ A;  3TM7 B;  1Y1W A;  1OA7 A;  5GLY A;  3GTM A;  2E2H A;  3IR5 A;  3O5A A;  4AYB A;  1CZ5 A;  1DMR A;  3CF2 A;  1PYU B;  5GLF A;  2GAE A;  1Y5I A;  3X2G A;  4KOD A;  1E18 A;  2V3V A;  2VPZ A;  3X2K A;  1I3Q A;  3GTQ A;  1G8J A;  4JS7 A;  4FFT A;  2A6H D; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...