2PTRA

Crystal structure of escherichia coli adenylosuccinate lyase mutant h171a with bound adenylosuccinate substrate
Total Genus 176
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
176
sequence length
459
structure length
454
Chain Sequence
MELSSLTAVSPVDGRYGDKVSALRGIFSEYGLLKFRVQVEVRWLQKLAAHAAIKEVPAFAADAIGYLDAIVASFSEEDAARIKTIERTTNHDVKAVEYFLKEKVAEIPELHAVSEFIHFACTSEDINNLSHALMLKTARDEVILPYWRQLIDGLKDLAVQYRDIPLLSRTAGQPATPSTIGKEMANVAYRMERQYRQLNQVEILGKINGAVGNYNAHIAAYPEVDWHQFSEEFVTSLGIQWNPYTTQIEPHDYIAELFDCVARFNTILIDFDRDVWGYIALNHFKQKTIAGEIGSSTMPHKVNPIDFENSEGNLGLSNAVLQHLASKLPVSRWQRDLTDSTVLRNLGVGIGYALIAYQSTLKGVSKLEVNRDHLLDELDHNWEVLAEPIQTVMRRYGIEKPYEKLKELVDAEGMKQFIDGLALPEEEKARLKAMTPANYIGRAITMVDELKHHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords Adenylosuccinate lyase
publication title Substrate and Product Complexes of Escherichia coli Adenylosuccinate Lyase Provide New Insights into the Enzymatic Mechanism.
pubmed doi rcsb
source organism Escherichia coli
total genus 176
structure length 454
sequence length 459
chains with identical sequence B
ec nomenclature ec 4.3.2.2: Adenylosuccinate lyase.
pdb deposition date 2007-05-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF08328 ASL_C Adenylosuccinate lyase C-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 2ptrA03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 2ptrA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 2ptrA02
1GK2A 4ADLA 1YFMA 4V2RA 4C6GA 5D6BA 3KDZA 3GTDA 1RE5A 3GZHA 4HGVA 2NYFA 1AUWA 4V2QA 1Q5NA 1GKJA 1XWOA 4MX2A 4FFXA 4C5SA 1T6JA 4EEIA 1C3CA 1FUQA 3R6QA 2X75A 3R6VA 1B8FA 1J3UA 2VD6A 1Y2MA 1K7WA 5EYVA 3R6YA 1W27A 3C8TA 3CZOA 4NSLA 2O78A 2PFMA 1TJ7A 2RJRA 1GKMA 4BABA 4EFCA 1FUOA 2E9FA 1YISA 2O6YA 2O7BA 4APBA 1K62A 5HW2A 1EB4A 2O7DA 1FUPA 3BHGA 4NLEA 2NYNA 1TJWA 1HY0A 3RD8A 1DOFA 1TJUA 1JSWA 2O7FA 2QVEA 4C5UA 5EYTA 3KDYA 5F92A 4APAA 3E04A 2FUSA 1FURA 1HY1A 1KQ7A 1U15A 1T6PA 4BAAA 2PTQA 3NO9A 2PTSA 1TJVA 4ADMA 4CQ5A 2OHYA 3NZ4A 5F91A 2YIIA 1DCNA 2RJSA 1U16A 2HVGA 1GK3A 1YFEA 3QBPA 1I0AA 3OCFA 3UNVA 3OCEA 4FLCA 4C5RA 2J91A 3TV2A 2QGAB 2PTRA 1VDKA 1C3UA 2O7EA 3RRPA
chains in the Genus database with same CATH superfamily
1GK2A 4ADLA 1YFMA 1XLYA 4V2RA 3U13A 2VL7A 4C6GA 4MUMA 5D6BA 3KDZA 3GTDA 1RE5A 3GZHA 4HGVA 4L6AA 5M0IA 2NYFA 5M0JA 1AUWA 4YIHA 4V2QA 1Q5NA 1GKJA 1XWOA 4MX2A 4FFXA 1Q92A 2I7DA 1T6JA 4C5SA 4EEIA 1C3CA 3BWVA 1FUQA 3R6QA 2X75A 3R6VA 1B8FA 1XL8A 1J3UA 2FELA 2VD6A 1Y2MA 1K7WA 5EYVA 4L57A 1W27A 1XL7A 3C8TA 3R6YA 4IQJM 3CZOA 2RCNA 4NSLA 2JAUA 2O78A 2PFMA 1TJ7A 2JARA 2RJRA 1GKMA 4BABA 4L6CA 4EFCA 3F4SA 1Z4MA 2D27A 1FUOA 2E9FA 1YISA 3CRW1 4E88A 1U0LA 1Z4JA 2O6YA 1Z4LA 2O7BA 4APBA 2YV5A 1K62A 5HW2A 1T9HA 1EB4A 1Z4IA 2O7DA 1FUPA 3BHGA 3F4RA 4NLEA 2NYNA 1TJWA 1HY0A 3RD8A 1DOFA 1TJUA 1XMDA 1JSWA 2D28C 2VSFA 1Z4PX 1Z4QA 2O7FA 2QVEA 1Q91A 4C5UA 1XMCA 5EYTA 3KDYA 5F92A 4APAA 4MWOA 3E04A 2FUSA 1FURA 2JAWA 1HY1A 1KQ7A 4YIKA 2FENA 1U15A 1T6PA 4BAAA 2PTQA 3NO9A 2PTSA 1TJVA 1IW7D 4ADMA 3U19A 3CRVA 4CQ5A 1MH9A 2OHYA 3NZ4A 5F91A 2YIIA 1DCNA 2RJSA 5H8WA 4NFLA 4A15A 1Z4KA 1U16A 2HVGA 3F4TA 1GK3A 1YFEA 3QBPA 1I0AA 3OCFA 3UNVA 4WNLA 3OCEA 4FLCA 4C5RA 2J91A 3TV2A 2QGAB 2PTRA 1VDKA 1C3UA 3CI0K 2O7EA 2JAOA 3RRPA
chains in the Genus database with same CATH topology
1GK2A 4ADLA 1YFMA 4V2RA 4C6GA 5D6BA 3KDZA 3GTDA 1RE5A 3GZHA 4HGVA 2NYFA 1AUWA 4V2QA 1Q5NA 1GKJA 1XWOA 4MX2A 4FFXA 4C5SA 1T6JA 4EEIA 1C3CA 1FUQA 3R6QA 2X75A 3R6VA 1B8FA 1J3UA 2VD6A 1Y2MA 1K7WA 5EYVA 3R6YA 1W27A 3C8TA 3CZOA 4NSLA 2O78A 2PFMA 1TJ7A 2RJRA 1GKMA 4BABA 4EFCA 1FUOA 2E9FA 1YISA 2O6YA 2O7BA 4APBA 1K62A 5HW2A 1EB4A 2O7DA 1FUPA 3BHGA 4NLEA 2NYNA 1TJWA 1HY0A 3RD8A 1DOFA 1TJUA 1JSWA 2O7FA 2QVEA 4C5UA 5EYTA 3KDYA 5F92A 4APAA 3E04A 2FUSA 1FURA 1HY1A 1KQ7A 1U15A 1T6PA 4BAAA 2PTQA 3NO9A 2PTSA 1TJVA 4ADMA 4CQ5A 2OHYA 3NZ4A 5F91A 2YIIA 1DCNA 2RJSA 1U16A 2HVGA 1GK3A 1YFEA 3QBPA 1I0AA 3OCFA 3UNVA 3OCEA 4FLCA 4C5RA 2J91A 3TV2A 2QGAB 2PTRA 1VDKA 1C3UA 2O7EA 3RRPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GK2 A;  4ADL A;  1YFM A;  4V2R A;  4C6G A;  5D6B A;  3KDZ A;  3GTD A;  1RE5 A;  3GZH A;  4HGV A;  2NYF A;  1AUW A;  4V2Q A;  1Q5N A;  1GKJ A;  1XWO A;  4MX2 A;  4FFX A;  4C5S A;  1T6J A;  4EEI A;  1C3C A;  1FUQ A;  3R6Q A;  2X75 A;  3R6V A;  1B8F A;  1J3U A;  2VD6 A;  1Y2M A;  1K7W A;  5EYV A;  3R6Y A;  1W27 A;  3C8T A;  3CZO A;  4NSL A;  2O78 A;  2PFM A;  1TJ7 A;  2RJR A;  1GKM A;  4BAB A;  4EFC A;  1FUO A;  2E9F A;  1YIS A;  2O6Y A;  2O7B A;  4APB A;  1K62 A;  5HW2 A;  1EB4 A;  2O7D A;  1FUP A;  3BHG A;  4NLE A;  2NYN A;  1TJW A;  1HY0 A;  3RD8 A;  1DOF A;  1TJU A;  1JSW A;  2O7F A;  2QVE A;  4C5U A;  5EYT A;  3KDY A;  5F92 A;  4APA A;  3E04 A;  2FUS A;  1FUR A;  1HY1 A;  1KQ7 A;  1U15 A;  1T6P A;  4BAA A;  2PTQ A;  3NO9 A;  2PTS A;  1TJV A;  4ADM A;  4CQ5 A;  2OHY A;  3NZ4 A;  5F91 A;  2YII A;  1DCN A;  2RJS A;  1U16 A;  2HVG A;  1GK3 A;  1YFE A;  3QBP A;  1I0A A;  3OCF A;  3UNV A;  3OCE A;  4FLC A;  4C5R A;  2J91 A;  3TV2 A;  2QGA B;  2PTR A;  1VDK A;  1C3U A;  2O7E A;  3RRP A; 
#chains in the Genus database with same CATH topology
 1GK2 A;  4ADL A;  1YFM A;  1XLY A;  4V2R A;  3U13 A;  2VL7 A;  4C6G A;  4MUM A;  5D6B A;  3KDZ A;  3GTD A;  1RE5 A;  3GZH A;  4HGV A;  4L6A A;  5M0I A;  2NYF A;  5M0J A;  1AUW A;  4YIH A;  4V2Q A;  1Q5N A;  1GKJ A;  1XWO A;  4MX2 A;  4FFX A;  1Q92 A;  2I7D A;  1T6J A;  4C5S A;  4EEI A;  1C3C A;  3BWV A;  1FUQ A;  3R6Q A;  2X75 A;  3R6V A;  1B8F A;  1XL8 A;  1J3U A;  2FEL A;  2VD6 A;  1Y2M A;  1K7W A;  5EYV A;  4L57 A;  1W27 A;  1XL7 A;  3C8T A;  3R6Y A;  4IQJ M;  3CZO A;  2RCN A;  4NSL A;  2JAU A;  2O78 A;  2PFM A;  1TJ7 A;  2JAR A;  2RJR A;  1GKM A;  4BAB A;  4L6C A;  4EFC A;  3F4S A;  1Z4M A;  2D27 A;  1FUO A;  2E9F A;  1YIS A;  3CRW 1;  4E88 A;  1U0L A;  1Z4J A;  2O6Y A;  1Z4L A;  2O7B A;  4APB A;  2YV5 A;  1K62 A;  5HW2 A;  1T9H A;  1EB4 A;  1Z4I A;  2O7D A;  1FUP A;  3BHG A;  3F4R A;  4NLE A;  2NYN A;  1TJW A;  1HY0 A;  3RD8 A;  1DOF A;  1TJU A;  1XMD A;  1JSW A;  2D28 C;  2VSF A;  1Z4P X;  1Z4Q A;  2O7F A;  2QVE A;  1Q91 A;  4C5U A;  1XMC A;  5EYT A;  3KDY A;  5F92 A;  4APA A;  4MWO A;  3E04 A;  2FUS A;  1FUR A;  2JAW A;  1HY1 A;  1KQ7 A;  4YIK A;  2FEN A;  1U15 A;  1T6P A;  4BAA A;  2PTQ A;  3NO9 A;  2PTS A;  1TJV A;  1IW7 D;  4ADM A;  3U19 A;  3CRV A;  4CQ5 A;  1MH9 A;  2OHY A;  3NZ4 A;  5F91 A;  2YII A;  1DCN A;  2RJS A;  5H8W A;  4NFL A;  4A15 A;  1Z4K A;  1U16 A;  2HVG A;  3F4T A;  1GK3 A;  1YFE A;  3QBP A;  1I0A A;  3OCF A;  3UNV A;  4WNL A;  3OCE A;  4FLC A;  4C5R A;  2J91 A;  3TV2 A;  2QGA B;  2PTR A;  1VDK A;  1C3U A;  3CI0 K;  2O7E A;  2JAO A;  3RRP A; 
#chains in the Genus database with same CATH homology
 1GK2 A;  4ADL A;  1YFM A;  4V2R A;  4C6G A;  5D6B A;  3KDZ A;  3GTD A;  1RE5 A;  3GZH A;  4HGV A;  2NYF A;  1AUW A;  4V2Q A;  1Q5N A;  1GKJ A;  1XWO A;  4MX2 A;  4FFX A;  4C5S A;  1T6J A;  4EEI A;  1C3C A;  1FUQ A;  3R6Q A;  2X75 A;  3R6V A;  1B8F A;  1J3U A;  2VD6 A;  1Y2M A;  1K7W A;  5EYV A;  3R6Y A;  1W27 A;  3C8T A;  3CZO A;  4NSL A;  2O78 A;  2PFM A;  1TJ7 A;  2RJR A;  1GKM A;  4BAB A;  4EFC A;  1FUO A;  2E9F A;  1YIS A;  2O6Y A;  2O7B A;  4APB A;  1K62 A;  5HW2 A;  1EB4 A;  2O7D A;  1FUP A;  3BHG A;  4NLE A;  2NYN A;  1TJW A;  1HY0 A;  3RD8 A;  1DOF A;  1TJU A;  1JSW A;  2O7F A;  2QVE A;  4C5U A;  5EYT A;  3KDY A;  5F92 A;  4APA A;  3E04 A;  2FUS A;  1FUR A;  1HY1 A;  1KQ7 A;  1U15 A;  1T6P A;  4BAA A;  2PTQ A;  3NO9 A;  2PTS A;  1TJV A;  4ADM A;  4CQ5 A;  2OHY A;  3NZ4 A;  5F91 A;  2YII A;  1DCN A;  2RJS A;  1U16 A;  2HVG A;  1GK3 A;  1YFE A;  3QBP A;  1I0A A;  3OCF A;  3UNV A;  3OCE A;  4FLC A;  4C5R A;  2J91 A;  3TV2 A;  2QGA B;  2PTR A;  1VDK A;  1C3U A;  2O7E A;  3RRP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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