2Q18X

2-keto-3-deoxy-d-arabinonate dehydratase
Total Genus 82
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
82
sequence length
291
structure length
282
Chain Sequence
MKLFRVVKRGYYISYAILDNSTIIRLDEDPIKALMRYSENKEVLGDRVTGIDYQSLLKSFQINDIRITKPIDPPEVWGSGISYENVAKILGKTIYEKVYDAVRPEIFFKATPNRCVGHGEAIAVRSDSEWTLPEPELAVVLDSNGKILGYTIMDDVSARDLEAENPLYLPQSKIYAGCCAFGPVIVTSDEIKNPYSLDITLKIVREGRVFFEGSVNTNKMRRKIEEQIQYLIRDNPIPDGTILTTGTAIVPGRDKGLKDEDIVEITISNIGTLITPVKKRRK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords 2-keto-3-deoxy-D-arabinonate dehydratase
publication title Structural insight into substrate binding and catalysis of a novel 2-keto-3-deoxy-D-arabinonate dehydratase illustrates common mechanistic features of the FAH superfamily.
pubmed doi rcsb
source organism Sulfolobus solfataricus
total genus 82
structure length 282
sequence length 291
ec nomenclature ec 4.2.1.141: 2-dehydro-3-deoxy-D-arabinonate dehydratase.
pdb deposition date 2007-05-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF01557 FAA_hydrolase Fumarylacetoacetate (FAA) hydrolase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.330.40 Alpha Beta Roll Vcp-like ATPase; Chain A, domain 2 Vcp-like ATPase; Chain A, domain 2 2q18X01
3.90.850.10 Alpha Beta Alpha-Beta Complex Fumarylacetoacetate hydrolase; domain 2 Fumarylacetoacetase-like, C-terminal domain 2q18X02
5D2IA 2HZYA 5D2JA 4PFZA 5D2GA 1NR9A 1SAWA 3V77A 1I7OA 2Q1DX 4MAQA 2EB5A 2Q18X 1QQJA 3QDFA 1HYOA 1SV6A 3R6OA 3BQBA 4DBHA 2Q1CX 5D2FA 2EB6A 1NKQA 4DBFA 3S52A 1WZOA 1GTTA 2WQTA 2Q1AX 2Q19X 3RR6A 4QKUA 2EB4A 1QCOA 3LZKA 1QCNA 2DFUA 5D2KA 5D2HA
chains in the Genus database with same CATH superfamily
5D2IA 5FTKA 4KDLA 1NR9A 3V77A 4MAQA 2Q18X 3ZJUA 1E32A 1R7RA 3HU1A 2LW6A 3FPUA 5CD1A 1QQJA 4AS1A 3FPRA 4DBHA 4FIBA 2Q1CX 5DYIA 1WLFA 5FTMA 5D2FA 1NKQA 3S52A 5C1BA 2GFAA 2QQSA 2YVLA 1QDNA 1I9GA 2DFUA 4KODA 1CR5A 5D2JA 5B6CA 2JV2A 2YUJA 2Q1DX 1QCSA 4CQNA 5FTNA 5D6YA 1SV6A 3BQBA 4UC4A 3MB5A 2MM0A 5EQJB 4KO8A 2XDPA 5CCBA 2Q1AX 1S3SA 2Q19X 4QKUA 5D6XA 5FTLA 2EB4A 4ARIA 3QC8A 2GF7A 4RV0A 2HZYA 2MM2A 1SAWA 1I7OA 5CCXA 2PJHB 5ERGB 2EB5A 1ZC1A 3QDFA 1HYOA 3R6OA 5FTJA 2EB6A 3HU2A 5EPPA 5DYGA 4AQ7A 2B25A 5GLFA 5C18A 3QQ8A 1QCOA 3LZKA 1QCNA 1CZ5A 4ARCA 2KY9A 4PFZA 1CZ4A 5D2GA 2PWYA 3LHDA 3FPTA 3QQ7A 4KLNA 3HU3A 3ZJTA 4KDIA 3ZJVA 3CF2A 3TIWA 4DBFA 5D6WA 1O54A 1GTTA 1WZOA 2WQTA 3QWZA 3RR6A 3LGAA 3ZGZA 2QQRA 5D2KA 5D2HA
chains in the Genus database with same CATH topology
5D2IA 5FTKA 4KDLA 1NR9A 3V77A 4MAQA 2Q18X 3ZJUA 1E32A 1R7RA 3HU1A 2LW6A 3FPUA 5CD1A 1QQJA 4AS1A 3FPRA 4DBHA 4FIBA 2Q1CX 5DYIA 1WLFA 5FTMA 5D2FA 1NKQA 3S52A 5C1BA 2GFAA 2QQSA 2YVLA 1QDNA 1I9GA 2DFUA 4KODA 1CR5A 5D2JA 5B6CA 2JV2A 2YUJA 2Q1DX 1QCSA 4CQNA 5FTNA 5D6YA 1SV6A 3BQBA 4UC4A 3MB5A 2MM0A 5EQJB 4KO8A 2XDPA 5CCBA 2Q1AX 1S3SA 2Q19X 4QKUA 5D6XA 5FTLA 2EB4A 4ARIA 3QC8A 2GF7A 4RV0A 2HZYA 2MM2A 1SAWA 1I7OA 5CCXA 2PJHB 5ERGB 2EB5A 1ZC1A 3QDFA 1HYOA 3R6OA 5FTJA 2EB6A 3HU2A 5EPPA 5DYGA 4AQ7A 2B25A 5GLFA 5C18A 3QQ8A 1QCOA 3LZKA 1QCNA 1CZ5A 4ARCA 2KY9A 4PFZA 1CZ4A 5D2GA 2PWYA 3LHDA 3FPTA 3QQ7A 4KLNA 3HU3A 3ZJTA 4KDIA 3ZJVA 3CF2A 3TIWA 4DBFA 5D6WA 1O54A 1GTTA 1WZOA 2WQTA 3QWZA 3RR6A 3LGAA 3ZGZA 2QQRA 5D2KA 5D2HA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5D2I A;  2HZY A;  5D2J A;  4PFZ A;  5D2G A;  1NR9 A;  1SAW A;  3V77 A;  1I7O A;  2Q1D X;  4MAQ A;  2EB5 A;  2Q18 X;  1QQJ A;  3QDF A;  1HYO A;  1SV6 A;  3R6O A;  3BQB A;  4DBH A;  2Q1C X;  5D2F A;  2EB6 A;  1NKQ A;  4DBF A;  3S52 A;  1WZO A;  1GTT A;  2WQT A;  2Q1A X;  2Q19 X;  3RR6 A;  4QKU A;  2EB4 A;  1QCO A;  3LZK A;  1QCN A;  2DFU A;  5D2K A;  5D2H A; 
#chains in the Genus database with same CATH topology
 5D2I A;  5FTK A;  4KDL A;  1NR9 A;  3V77 A;  4MAQ A;  2Q18 X;  3ZJU A;  1E32 A;  1R7R A;  3HU1 A;  2LW6 A;  3FPU A;  5CD1 A;  1QQJ A;  4AS1 A;  3FPR A;  4DBH A;  4FIB A;  2Q1C X;  5DYI A;  1WLF A;  5FTM A;  5D2F A;  1NKQ A;  3S52 A;  5C1B A;  2GFA A;  2QQS A;  2YVL A;  1QDN A;  1I9G A;  2DFU A;  4KOD A;  1CR5 A;  5D2J A;  5B6C A;  2JV2 A;  2YUJ A;  2Q1D X;  1QCS A;  4CQN A;  5FTN A;  5D6Y A;  1SV6 A;  3BQB A;  4UC4 A;  3MB5 A;  2MM0 A;  5EQJ B;  4KO8 A;  2XDP A;  5CCB A;  2Q1A X;  1S3S A;  2Q19 X;  4QKU A;  5D6X A;  5FTL A;  2EB4 A;  4ARI A;  3QC8 A;  2GF7 A;  4RV0 A;  2HZY A;  2MM2 A;  1SAW A;  1I7O A;  5CCX A;  2PJH B;  5ERG B;  2EB5 A;  1ZC1 A;  3QDF A;  1HYO A;  3R6O A;  5FTJ A;  2EB6 A;  3HU2 A;  5EPP A;  5DYG A;  4AQ7 A;  2B25 A;  5GLF A;  5C18 A;  3QQ8 A;  1QCO A;  3LZK A;  1QCN A;  1CZ5 A;  4ARC A;  2KY9 A;  4PFZ A;  1CZ4 A;  5D2G A;  2PWY A;  3LHD A;  3FPT A;  3QQ7 A;  4KLN A;  3HU3 A;  3ZJT A;  4KDI A;  3ZJV A;  3CF2 A;  3TIW A;  4DBF A;  5D6W A;  1O54 A;  1GTT A;  1WZO A;  2WQT A;  3QWZ A;  3RR6 A;  3LGA A;  3ZGZ A;  2QQR A;  5D2K A;  5D2H A; 
#chains in the Genus database with same CATH homology
 5D2I A;  5FTK A;  4KDL A;  1NR9 A;  3V77 A;  4MAQ A;  2Q18 X;  3ZJU A;  1E32 A;  1R7R A;  3HU1 A;  2LW6 A;  3FPU A;  5CD1 A;  1QQJ A;  4AS1 A;  3FPR A;  4DBH A;  4FIB A;  2Q1C X;  5DYI A;  1WLF A;  5FTM A;  5D2F A;  1NKQ A;  3S52 A;  5C1B A;  2GFA A;  2QQS A;  2YVL A;  1QDN A;  1I9G A;  2DFU A;  4KOD A;  1CR5 A;  5D2J A;  5B6C A;  2JV2 A;  2YUJ A;  2Q1D X;  1QCS A;  4CQN A;  5FTN A;  5D6Y A;  1SV6 A;  3BQB A;  4UC4 A;  3MB5 A;  2MM0 A;  5EQJ B;  4KO8 A;  2XDP A;  5CCB A;  2Q1A X;  1S3S A;  2Q19 X;  4QKU A;  5D6X A;  5FTL A;  2EB4 A;  4ARI A;  3QC8 A;  2GF7 A;  4RV0 A;  2HZY A;  2MM2 A;  1SAW A;  1I7O A;  5CCX A;  2PJH B;  5ERG B;  2EB5 A;  1ZC1 A;  3QDF A;  1HYO A;  3R6O A;  5FTJ A;  2EB6 A;  3HU2 A;  5EPP A;  5DYG A;  4AQ7 A;  2B25 A;  5GLF A;  5C18 A;  3QQ8 A;  1QCO A;  3LZK A;  1QCN A;  1CZ5 A;  4ARC A;  2KY9 A;  4PFZ A;  1CZ4 A;  5D2G A;  2PWY A;  3LHD A;  3FPT A;  3QQ7 A;  4KLN A;  3HU3 A;  3ZJT A;  4KDI A;  3ZJV A;  3CF2 A;  3TIW A;  4DBF A;  5D6W A;  1O54 A;  1GTT A;  1WZO A;  2WQT A;  3QWZ A;  3RR6 A;  3LGA A;  3ZGZ A;  2QQR A;  5D2K A;  5D2H A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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