2R92L

Elongation complex of rna polymerase ii with artificial rdrp scaffold
Total Genus 1
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
1
sequence length
46
structure length
46
Chain Sequence
ATLKYICAECSSKLSLSRTDAVRCKDCGHRILLKARTKRLVQFEAR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase/rna
molecule keywords RNA (5'-R(*UP*GP*CP*AP*UP*AP*AP*AP*GP*AP*CP*CP*AP*GP*GP*C)-3
publication title Molecular basis of RNA-dependent RNA polymerase II activity.
pubmed doi rcsb
total genus 1
structure length 46
sequence length 46
ec nomenclature
pdb deposition date 2007-09-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF03604 DNA_RNApol_7kD DNA directed RNA polymerase, 7 kDa subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.30 Mainly Beta Single Sheet Rubrerythrin, domain 2 RNA polymerase ii, chain L 2r92L00
3S1NL 5M5YL 4A3LL 2WAQP 3RZOL 3GTPL 5IYBL 3RZDL 1Y1WL 1TWAL 5C44L 2E2IL 2R93L 3S14L 3GTKL 4A3BL 4A3KL 5C4XL 3K7AL 3S16L 1TWHL 4X6AL 2NVTL 3HOUL 3GTLL 3H0GL 4C3HL 4Y7NL 5M5XL 2E2HL 2JA6L 5C4JL 2E2JL 5IP7L 3HOWL 2PMZP 3HOXL 3GTQL 4C2M1 3M3YL 3S2HL 4A3CL 3HOVL 4A3EL 2NVQL 3PO2L 1I6HL 1I3QL 4BXXL 5FJ8L 5IP9L 2YU9L 4A3IL 4BBSL 3I4NL 1TWCL 5M3ML 1WCML 3HOZL 4BBRL 4A3FL 1Y1VL 4BY7L 3M4OL 3S15L 2VUML 4BY1L 4C3IL 1TWGL 5IYDL 4A93L 1I50L 5IYCL 3GTJL 3S2DL 4A3DL 2NVXL 4QIWP 5M3FL 3PO3L 1R9TL 2R92L 3S17L 2JA7L 3GTOL 4Y52L 2R7ZL 1SFOL 3I4ML 4A3GL 3GTML 3GTGL 3S1RL 3FKIL 3CQZL 2JA5L 4A3ML 2WB1P 4A3JL 2NVYL 5M5WL 1K83L 3HKZP 3S1ML 2Y0SP 4C3JL 3S1QL 3H3VM 2JA8L 5C3EL 2B63L 1TWFL 3HOYL 4AYBP 5FLML
chains in the Genus database with same CATH superfamily
3S1NL 1LKOA 5DM71 1LKMA 2LCQA 1R0GA 4WFN1 4ME3A 3KYXA 3GTKL 4A3KL 5C4XL 3S16L 2CKAA 1LKPA 3H97A 2A6ED 5MLC3 2JI2A 3H0GL 1YUZA 5RXNA 4Y7NL 5M5XL 2E2HL 1PFUA 5C4JL 1IRNA 3HOXL 2CKCA 3GTQL 1SMWA 5MGNA 3S2HL 2PVEA 4AHYA 2DSXA 1SMUA 2ZIXA 5EINC 3MQKB 3I4NL 2KN9A 3HOZL 4BBRL 4A3FL 2C6BA 2JI1A 3PKJA 2VUML 2XJPA 4GS7D 2NYDA 2O5JD 1CADA 1FHHA 2GMGA 4UY81 1VZIA 1CAAA 1IW7D 4RXNA 1SMMA 3A44A 5DM61 1JYBA 3PZAA 2R7ZL 1SFOL 3J7Z1 4A3GL 2C6AA 2XJSA 4POGA 3FKIL 4JAFA 1RYQA 4AR4A 1ODHA 2H12A 2AYJA 2M6OA 4A3JL 1VZGA 4AI3A 1DX8A 4G6BA 3S1ML 3B0AB 3NFPI 3H3VM 4JADA 4E6YA 2V0FA 1R0IA 1E8JA 3K35A 4LHLA 4AYBP 2BE5D 1TWCL 3HJWB 5M5YL 1IROA 4POFA 4ZN1B 4A3LL 2V0EA 1Y1WL 2XJVA 5C44L 4AHZA 2RDVA 1BRFA 1S2ZA 5GAGc 4X6AL 5EIOC 1FHMA 3MPSA 4TPUA 2AQCA 2ERSA 3JR7A 4K9FA 3VPBE 4C2M1 4A3CL 1YK5A 3KYYA 4BXXL 2YU9L 3WWNB 1WCML 2JI3A 1VCXA 4BY1L 4C3IL 1B2OA 1Z92B 2PVXA 4YWMA 5IYCL 5AN9H 2K2DA 3S2DL 1BQ9A 2NVXL 1OWBA 3MSUA 5GADc 1R9TL 1PZXA 3S17L 3LWQB 2JA7L 1R0FA 3GTOL 3I4ML 3GTGL 5H1Sc 3HAXC 4A3ML 2KKDA 2WB1P 3P2AA 1C09A 2Z3QB 3B08B 1R0HA 3H99A 2XJTA 4AR3A 5JVH1 2V3BB 5JVG1 4C3JL 5GAEc 3J7Y1 4AR6A 8RXNA 1TWFL 1RB9A 1YK4A 1PFVA 5FLML 1T9OA 3P8BA 3LWOB 2WAQP 4U671 3PIP1 3H9BA 5MFZA 2APOB 3GTPL 3RZDL 3LWPB 2A68D 2A6HD 2E2IL 2R93L 3S14L 5AI2A 3PIO1 1F4LA 1TWHL 1T9PA 1PFYA 3RYGA 3HOUL 3PL5A 1R0JA 6RXNA 1BE7A 3KYWA 1S30A 4C3HL 1QCVA 2JA6L 3KYVA 5IP7L 2PMZP 3IU3I 3M3YL 1S24A 4XXBB 3RZTA 3LNLA 4TVMA 1DVBA 1YV1A 1BFYA 2Z3RB 4AR5A 5FJ8L 4AHWA 5IP9L 4A3IL 4AI1A 1YUXA 1IU6A 2HR5A 5MF6A 4BY7L 3M4OL 1H7VA 2VL6A 3HJYB 2B5ID 1TWGL 2M6PA 1I50L 3GTJL 1NNQA 4QIWP 1B71A 2J9UB 3PO3L 3LWVB 4Y52L 3S1RL 4YWLA 2JA5L 1T9QA 2M4YA 1RDVA 5AI3A 1K83L 2Y0SP 2PYAA 3LPEB 2JA8L 2B63L 1LTLA 1NXEA 1B13A 7RXNA 3SS2A 1B2JA 2L0ZA 3RZOL 1QYBA 3RZ6A 5IYBL 1TWAL 2CR8A 4JAEA 3H9CA 1OWCA 4A3BL 1BQ8A 1ZRPA 3WWLA 3K7AL 3ZG6A 2NVTL 3GTLL 2XJQA 1RDGA 1WJVA 2XJRA 2XJUA 3HOWL 2E2JL 2AUSB 3HOVL 4A3EL 1RWDA 2NVQL 3PO2L 1I6HL 1I3QL 2QL0A 5GAHc 5MFPA 1RYTA 4BBSL 4AI2A 5M3ML 4AHXA 1Y1VL 1QQTA 3FDJA 3S15L 3KYUA 3PKIA 1NXGA 2M4VA 5IYDL 4A93L 5K2ME 1PFWA 4A3DL 3PWFA 2ERJA 2PSMC 4LHNA 2MS3A 5M3FL 5IY0A 2R92L 4XGHA 4B8CD 3GTML 2RFKB 4AI0A 3CQZL 1P7PA 3LWRB 2PPTA 2NVYL 5M5WL 3QVDA 3HKZP 4JAGA 2HVYC 3S1QL 1VZHA 2EY4E 3QQCE 4ZN3B 4V196 5C3EL 2A69D 3HOYL 1IU5A
chains in the Genus database with same CATH topology
3S1NL 5M5YL 4A3LL 2WAQP 3RZOL 3GTPL 5IYBL 3RZDL 1Y1WL 1TWAL 5C44L 2E2IL 2R93L 3S14L 3GTKL 4A3BL 4A3KL 5C4XL 3K7AL 3S16L 1TWHL 4X6AL 2NVTL 3HOUL 3GTLL 3H0GL 4C3HL 4Y7NL 5M5XL 2E2HL 2JA6L 5C4JL 2E2JL 5IP7L 3HOWL 2PMZP 3HOXL 3GTQL 4C2M1 3M3YL 3S2HL 4A3CL 3HOVL 4A3EL 2NVQL 3PO2L 1I6HL 1I3QL 4BXXL 5FJ8L 5IP9L 2YU9L 4A3IL 4BBSL 3I4NL 1TWCL 5M3ML 1WCML 3HOZL 4BBRL 4A3FL 1Y1VL 4BY7L 3M4OL 3S15L 2VUML 4BY1L 4C3IL 1TWGL 5IYDL 4A93L 1I50L 5IYCL 3GTJL 3S2DL 4A3DL 2NVXL 4QIWP 5M3FL 3PO3L 1R9TL 2R92L 3S17L 2JA7L 3GTOL 4Y52L 2R7ZL 1SFOL 3I4ML 4A3GL 3GTML 3GTGL 3S1RL 3FKIL 3CQZL 2JA5L 4A3ML 2WB1P 4A3JL 2NVYL 5M5WL 1K83L 3HKZP 3S1ML 2Y0SP 4C3JL 3S1QL 3H3VM 2JA8L 5C3EL 2B63L 1TWFL 3HOYL 4AYBP 5FLML
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3S1N L;  5M5Y L;  4A3L L;  2WAQ P;  3RZO L;  3GTP L;  5IYB L;  3RZD L;  1Y1W L;  1TWA L;  5C44 L;  2E2I L;  2R93 L;  3S14 L;  3GTK L;  4A3B L;  4A3K L;  5C4X L;  3K7A L;  3S16 L;  1TWH L;  4X6A L;  2NVT L;  3HOU L;  3GTL L;  3H0G L;  4C3H L;  4Y7N L;  5M5X L;  2E2H L;  2JA6 L;  5C4J L;  2E2J L;  5IP7 L;  3HOW L;  2PMZ P;  3HOX L;  3GTQ L;  4C2M 1;  3M3Y L;  3S2H L;  4A3C L;  3HOV L;  4A3E L;  2NVQ L;  3PO2 L;  1I6H L;  1I3Q L;  4BXX L;  5FJ8 L;  5IP9 L;  2YU9 L;  4A3I L;  4BBS L;  3I4N L;  1TWC L;  5M3M L;  1WCM L;  3HOZ L;  4BBR L;  4A3F L;  1Y1V L;  4BY7 L;  3M4O L;  3S15 L;  2VUM L;  4BY1 L;  4C3I L;  1TWG L;  5IYD L;  4A93 L;  1I50 L;  5IYC L;  3GTJ L;  3S2D L;  4A3D L;  2NVX L;  4QIW P;  5M3F L;  3PO3 L;  1R9T L;  2R92 L;  3S17 L;  2JA7 L;  3GTO L;  4Y52 L;  2R7Z L;  1SFO L;  3I4M L;  4A3G L;  3GTM L;  3GTG L;  3S1R L;  3FKI L;  3CQZ L;  2JA5 L;  4A3M L;  2WB1 P;  4A3J L;  2NVY L;  5M5W L;  1K83 L;  3HKZ P;  3S1M L;  2Y0S P;  4C3J L;  3S1Q L;  3H3V M;  2JA8 L;  5C3E L;  2B63 L;  1TWF L;  3HOY L;  4AYB P;  5FLM L; 
#chains in the Genus database with same CATH topology
 3S1N L;  1LKO A;  5DM7 1;  1LKM A;  2LCQ A;  1R0G A;  4WFN 1;  4ME3 A;  3KYX A;  3GTK L;  4A3K L;  5C4X L;  3S16 L;  2CKA A;  1LKP A;  3H97 A;  2A6E D;  5MLC 3;  2JI2 A;  3H0G L;  1YUZ A;  5RXN A;  4Y7N L;  5M5X L;  2E2H L;  1PFU A;  5C4J L;  1IRN A;  3HOX L;  2CKC A;  3GTQ L;  1SMW A;  5MGN A;  3S2H L;  2PVE A;  4AHY A;  2DSX A;  1SMU A;  2ZIX A;  5EIN C;  3MQK B;  3I4N L;  2KN9 A;  3HOZ L;  4BBR L;  4A3F L;  2C6B A;  2JI1 A;  3PKJ A;  2VUM L;  2XJP A;  4GS7 D;  2NYD A;  2O5J D;  1CAD A;  1FHH A;  2GMG A;  4UY8 1;  1VZI A;  1CAA A;  1IW7 D;  4RXN A;  1SMM A;  3A44 A;  5DM6 1;  1JYB A;  3PZA A;  2R7Z L;  1SFO L;  3J7Z 1;  4A3G L;  2C6A A;  2XJS A;  4POG A;  3FKI L;  4JAF A;  1RYQ A;  4AR4 A;  1ODH A;  2H12 A;  2AYJ A;  2M6O A;  4A3J L;  1VZG A;  4AI3 A;  1DX8 A;  4G6B A;  3S1M L;  3B0A B;  3NFP I;  3H3V M;  4JAD A;  4E6Y A;  2V0F A;  1R0I A;  1E8J A;  3K35 A;  4LHL A;  4AYB P;  2BE5 D;  1TWC L;  3HJW B;  5M5Y L;  1IRO A;  4POF A;  4ZN1 B;  4A3L L;  2V0E A;  1Y1W L;  2XJV A;  5C44 L;  4AHZ A;  2RDV A;  1BRF A;  1S2Z A;  5GAG c;  4X6A L;  5EIO C;  1FHM A;  3MPS A;  4TPU A;  2AQC A;  2ERS A;  3JR7 A;  4K9F A;  3VPB E;  4C2M 1;  4A3C L;  1YK5 A;  3KYY A;  4BXX L;  2YU9 L;  3WWN B;  1WCM L;  2JI3 A;  1VCX A;  4BY1 L;  4C3I L;  1B2O A;  1Z92 B;  2PVX A;  4YWM A;  5IYC L;  5AN9 H;  2K2D A;  3S2D L;  1BQ9 A;  2NVX L;  1OWB A;  3MSU A;  5GAD c;  1R9T L;  1PZX A;  3S17 L;  3LWQ B;  2JA7 L;  1R0F A;  3GTO L;  3I4M L;  3GTG L;  5H1S c;  3HAX C;  4A3M L;  2KKD A;  2WB1 P;  3P2A A;  1C09 A;  2Z3Q B;  3B08 B;  1R0H A;  3H99 A;  2XJT A;  4AR3 A;  5JVH 1;  2V3B B;  5JVG 1;  4C3J L;  5GAE c;  3J7Y 1;  4AR6 A;  8RXN A;  1TWF L;  1RB9 A;  1YK4 A;  1PFV A;  5FLM L;  1T9O A;  3P8B A;  3LWO B;  2WAQ P;  4U67 1;  3PIP 1;  3H9B A;  5MFZ A;  2APO B;  3GTP L;  3RZD L;  3LWP B;  2A68 D;  2A6H D;  2E2I L;  2R93 L;  3S14 L;  5AI2 A;  3PIO 1;  1F4L A;  1TWH L;  1T9P A;  1PFY A;  3RYG A;  3HOU L;  3PL5 A;  1R0J A;  6RXN A;  1BE7 A;  3KYW A;  1S30 A;  4C3H L;  1QCV A;  2JA6 L;  3KYV A;  5IP7 L;  2PMZ P;  3IU3 I;  3M3Y L;  1S24 A;  4XXB B;  3RZT A;  3LNL A;  4TVM A;  1DVB A;  1YV1 A;  1BFY A;  2Z3R B;  4AR5 A;  5FJ8 L;  4AHW A;  5IP9 L;  4A3I L;  4AI1 A;  1YUX A;  1IU6 A;  2HR5 A;  5MF6 A;  4BY7 L;  3M4O L;  1H7V A;  2VL6 A;  3HJY B;  2B5I D;  1TWG L;  2M6P A;  1I50 L;  3GTJ L;  1NNQ A;  4QIW P;  1B71 A;  2J9U B;  3PO3 L;  3LWV B;  4Y52 L;  3S1R L;  4YWL A;  2JA5 L;  1T9Q A;  2M4Y A;  1RDV A;  5AI3 A;  1K83 L;  2Y0S P;  2PYA A;  3LPE B;  2JA8 L;  2B63 L;  1LTL A;  1NXE A;  1B13 A;  7RXN A;  3SS2 A;  1B2J A;  2L0Z A;  3RZO L;  1QYB A;  3RZ6 A;  5IYB L;  1TWA L;  2CR8 A;  4JAE A;  3H9C A;  1OWC A;  4A3B L;  1BQ8 A;  1ZRP A;  3WWL A;  3K7A L;  3ZG6 A;  2NVT L;  3GTL L;  2XJQ A;  1RDG A;  1WJV A;  2XJR A;  2XJU A;  3HOW L;  2E2J L;  2AUS B;  3HOV L;  4A3E L;  1RWD A;  2NVQ L;  3PO2 L;  1I6H L;  1I3Q L;  2QL0 A;  5GAH c;  5MFP A;  1RYT A;  4BBS L;  4AI2 A;  5M3M L;  4AHX A;  1Y1V L;  1QQT A;  3FDJ A;  3S15 L;  3KYU A;  3PKI A;  1NXG A;  2M4V A;  5IYD L;  4A93 L;  5K2M E;  1PFW A;  4A3D L;  3PWF A;  2ERJ A;  2PSM C;  4LHN A;  2MS3 A;  5M3F L;  5IY0 A;  2R92 L;  4XGH A;  4B8C D;  3GTM L;  2RFK B;  4AI0 A;  3CQZ L;  1P7P A;  3LWR B;  2PPT A;  2NVY L;  5M5W L;  3QVD A;  3HKZ P;  4JAG A;  2HVY C;  3S1Q L;  1VZH A;  2EY4 E;  3QQC E;  4ZN3 B;  4V19 6;  5C3E L;  2A69 D;  3HOY L;  1IU5 A; 
#chains in the Genus database with same CATH homology
 3S1N L;  5M5Y L;  4A3L L;  2WAQ P;  3RZO L;  3GTP L;  5IYB L;  3RZD L;  1Y1W L;  1TWA L;  5C44 L;  2E2I L;  2R93 L;  3S14 L;  3GTK L;  4A3B L;  4A3K L;  5C4X L;  3K7A L;  3S16 L;  1TWH L;  4X6A L;  2NVT L;  3HOU L;  3GTL L;  3H0G L;  4C3H L;  4Y7N L;  5M5X L;  2E2H L;  2JA6 L;  5C4J L;  2E2J L;  5IP7 L;  3HOW L;  2PMZ P;  3HOX L;  3GTQ L;  4C2M 1;  3M3Y L;  3S2H L;  4A3C L;  3HOV L;  4A3E L;  2NVQ L;  3PO2 L;  1I6H L;  1I3Q L;  4BXX L;  5FJ8 L;  5IP9 L;  2YU9 L;  4A3I L;  4BBS L;  3I4N L;  1TWC L;  5M3M L;  1WCM L;  3HOZ L;  4BBR L;  4A3F L;  1Y1V L;  4BY7 L;  3M4O L;  3S15 L;  2VUM L;  4BY1 L;  4C3I L;  1TWG L;  5IYD L;  4A93 L;  1I50 L;  5IYC L;  3GTJ L;  3S2D L;  4A3D L;  2NVX L;  4QIW P;  5M3F L;  3PO3 L;  1R9T L;  2R92 L;  3S17 L;  2JA7 L;  3GTO L;  4Y52 L;  2R7Z L;  1SFO L;  3I4M L;  4A3G L;  3GTM L;  3GTG L;  3S1R L;  3FKI L;  3CQZ L;  2JA5 L;  4A3M L;  2WB1 P;  4A3J L;  2NVY L;  5M5W L;  1K83 L;  3HKZ P;  3S1M L;  2Y0S P;  4C3J L;  3S1Q L;  3H3V M;  2JA8 L;  5C3E L;  2B63 L;  1TWF L;  3HOY L;  4AYB P;  5FLM L; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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