2R93L

Elongation complex of rna polymerase ii with a hepatitis delta virus-derived rna stem loop
Total Genus 1
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
1
sequence length
46
structure length
46
Chain Sequence
ATLKYICAECSSKLSLSRTDAVRCKDCGHRILLKARTKRLVQFEAR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase/rna
molecule keywords RNA (5'-R(*UP*GP*AP*UP*UP*CP*UP*CP*UP*AP*UP*CP*GP*GP*AP*AP*U
publication title Molecular basis of RNA-dependent RNA polymerase II activity.
pubmed doi rcsb
total genus 1
structure length 46
sequence length 46
ec nomenclature
pdb deposition date 2007-09-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF03604 DNA_RNApol_7kD DNA directed RNA polymerase, 7 kDa subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.30 Mainly Beta Single Sheet Rubrerythrin, domain 2 RNA polymerase ii, chain L 2r93L00
1TWCL 5M3FL 3HOXL 2Y0SP 2R7ZL 3S1RL 4C3HL 1TWFL 5C3EL 1K83L 4A3GL 3HOZL 4A3JL 3H3VM 3RZOL 2JA6L 4A3BL 3GTML 1R9TL 3GTOL 4C3JL 4Y52L 5FJ8L 5M5YL 3HOYL 2WB1P 3HKZP 3S2HL 3S1ML 3GTJL 5FLML 3S1QL 5IYBL 4X6AL 1Y1WL 2NVTL 2E2IL 2E2HL 4A3EL 3K7AL 4BBRL 4A93L 3PO3L 3FKIL 2NVQL 2WAQP 5C44L 3HOVL 1TWHL 2NVYL 2PMZP 2VUML 4QIWP 1SFOL 3H0GL 4A3ML 3GTQL 4BXXL 4C3IL 5M5XL 4BY7L 3CQZL 3HOWL 3GTPL 4A3LL 2E2JL 5IP7L 2JA7L 2R93L 3GTGL 4Y7NL 3S14L 1Y1VL 3S15L 3S16L 1TWGL 2YU9L 2B63L 1WCML 2JA5L 5C4JL 4A3KL 5IP9L 5M3ML 3HOUL 3I4NL 3S17L 4AYBP 3RZDL 4A3FL 1I50L 3PO2L 4BY1L 4A3DL 3S2DL 5M5WL 4A3CL 1I6HL 3GTLL 4A3IL 2JA8L 2NVXL 2R92L 4C2M1 5IYCL 3M3YL 3M4OL 3GTKL 1TWAL 4BBSL 3S1NL 5IYDL 1I3QL 3I4ML 5C4XL
chains in the Genus database with same CATH superfamily
5M3FL 2Y0SP 3MQKB 3QQCE 4C3HL 1RDGA 4JAFA 4RXNA 2L0ZA 4A3JL 3H3VM 3KYXA 2PPTA 3LWRB 5K2ME 2PSMC 5AI2A 1T9QA 3GTOL 3PIP1 2M4VA 4Y52L 3P8BA 4YWMA 3HOYL 3HKZP 3S1ML 1S24A 3LPEB 1R0JA 1WJVA 3S1QL 1Y1WL 2NVTL 2AYJA 1BFYA 2HR5A 4BBRL 3RZ6A 1PFVA 2XJSA 3WWNB 3KYYA 3PKIA 2VUML 2XJPA 2ZIXA 1SMUA 5AI3A 3GTQL 1VZGA 1SMMA 4BXXL 3PZAA 2M6OA 1VZHA 1YK4A 2JA7L 2R93L 1DX8A 5IY0A 1DVBA 1Y1VL 2EY4E 3S15L 2O5JD 1B13A 1RYTA 2YU9L 3WWLA 3P2AA 5C4JL 5M3ML 1OWCA 3SS2A 1B2OA 4AYBP 1FHHA 1LTLA 3HAXC 2ERJA 4JAGA 1PFYA 3PO2L 4A3DL 1RDVA 3LNLA 1C09A 1YK5A 5M5WL 5GADc 1I6HL 2A69D 5GAEc 2CKCA 3FDJA 2NYDA 3M4OL 1TWAL 2CR8A 1YUXA 2XJTA 1VCXA 1TWCL 3HOXL 5H1Sc 1LKOA 3S1RL 3J7Y1 4JAEA 1K83L 3HJYB 4AHYA 1RB9A 4GS7D 3KYUA 3RZOL 1B2JA 4JADA 1S2ZA 2AQCA 1IW7D 3ZG6A 3A44A 1BQ8A 2XJUA 2BE5D 2WB1P 3VPBE 4AHWA 3B0AB 1ZRPA 3H9CA 2J9UB 3K7AL 4A93L 4B8CD 3FKIL 1R0HA 1YUZA 2NVQL 2LCQA 2K2DA 3HOVL 1QQTA 1TWHL 2KKDA 1IU5A 4TPUA 4QIWP 4AI2A 2A6HD 1NNQA 4XGHA 4C3IL 5M5XL 3CQZL 3HOWL 3H9BA 3PKJA 1R0GA 5IP7L 4K9FA 3PL5A 2JA5L 3B08B 5MFPA 2APOB 3H99A 5DM61 3KYWA 5MF6A 3S17L 3NFPI 3KYVA 5AN9H 4AHZA 4A3FL 4V196 1QYBA 4BY1L 1YV1A 5GAHc 4AR6A 2M4YA 4WFN1 4A3CL 3GTLL 2RFKB 4ZN3B 2R92L 2KN9A 3GTKL 2XJRA 3LWPB 3S1NL 1IROA 3LWOB 5EIOC 2XJQA 6RXNA 1R0FA 2PVEA 1JYBA 3HOZL 1T9PA 4AHXA 2Z3RB 2JI2A 3H97A 3GTML 3K35A 3PWFA 2XJVA 7RXNA 4ZN1B 3RYGA 3GTJL 4AR5A 5FLML 2M6PA 1BE7A 1PZXA 5IYBL 5JVG1 1F4LA 1ODHA 2E2IL 2E2HL 4A3EL 3MSUA 1BQ9A 3IU3I 1BRFA 3QVDA 2C6AA 5C44L 4POFA 2PMZP 2PVXA 1IU6A 1SFOL 1RWDA 5EINC 4A3ML 2RDVA 1NXGA 4U671 1H7VA 1NXEA 3GTPL 8RXNA 4A3LL 1CAAA 2H12A 1QCVA 2B63L 1WCML 3LWQB 1RYQA 4A3KL 2V3BB 4LHNA 5RXNA 5IP9L 2ERSA 3RZTA 3LWVB 1I50L 3MPSA 5MFZA 2NVXL 1OWBA 5IYCL 3M3YL 4BBSL 3J7Z1 1VZIA 5C4XL 4POGA 2CKAA 3PIO1 2R7ZL 2VL6A 2QL0A 1TWFL 5C3EL 2GMGA 4XXBB 4A3GL 5JVH1 2JA6L 1E8JA 4A3BL 1R9TL 2A68D 4C3JL 2MS3A 4E6YA 2C6BA 5FJ8L 5M5YL 2JI3A 3S2HL 1LKPA 4AI0A 4X6AL 4AI3A 2JI1A 4AR4A 1LKMA 1P7PA 5MLC3 3PO3L 1B71A 2PYAA 4LHLA 2WAQP 2AUSB 5MGNA 2NVYL 1Z92B 2A6ED 3H0GL 4G6BA 4AI1A 2V0EA 4BY7L 1PFWA 1R0IA 2E2JL 3GTGL 4Y7NL 4UY81 3S14L 2HVYC 3S16L 2Z3QB 4YWLA 1TWGL 1SMWA 1T9OA 1IRNA 3HOUL 3I4NL 3HJWB 3JR7A 3RZDL 2B5ID 5DM71 1S30A 3S2DL 1PFUA 2DSXA 4ME3A 4A3IL 2JA8L 4TVMA 5GAGc 4C2M1 2V0FA 1CADA 4AR3A 1FHMA 5IYDL 1I3QL 3I4ML
chains in the Genus database with same CATH topology
1TWCL 5M3FL 3HOXL 2Y0SP 2R7ZL 3S1RL 4C3HL 1TWFL 5C3EL 1K83L 4A3GL 3HOZL 4A3JL 3H3VM 3RZOL 2JA6L 4A3BL 3GTML 1R9TL 3GTOL 4C3JL 4Y52L 5FJ8L 5M5YL 3HOYL 2WB1P 3HKZP 3S2HL 3S1ML 3GTJL 5FLML 3S1QL 5IYBL 4X6AL 1Y1WL 2NVTL 2E2IL 2E2HL 4A3EL 3K7AL 4BBRL 4A93L 3PO3L 3FKIL 2NVQL 2WAQP 5C44L 3HOVL 1TWHL 2NVYL 2PMZP 2VUML 4QIWP 1SFOL 3H0GL 4A3ML 3GTQL 4BXXL 4C3IL 5M5XL 4BY7L 3CQZL 3HOWL 3GTPL 4A3LL 2E2JL 5IP7L 2JA7L 2R93L 3GTGL 4Y7NL 3S14L 1Y1VL 3S15L 3S16L 1TWGL 2YU9L 2B63L 1WCML 2JA5L 5C4JL 4A3KL 5IP9L 5M3ML 3HOUL 3I4NL 3S17L 4AYBP 3RZDL 4A3FL 1I50L 3PO2L 4BY1L 4A3DL 3S2DL 5M5WL 4A3CL 1I6HL 3GTLL 4A3IL 2JA8L 2NVXL 2R92L 4C2M1 5IYCL 3M3YL 3M4OL 3GTKL 1TWAL 4BBSL 3S1NL 5IYDL 1I3QL 3I4ML 5C4XL
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TWC L;  5M3F L;  3HOX L;  2Y0S P;  2R7Z L;  3S1R L;  4C3H L;  1TWF L;  5C3E L;  1K83 L;  4A3G L;  3HOZ L;  4A3J L;  3H3V M;  3RZO L;  2JA6 L;  4A3B L;  3GTM L;  1R9T L;  3GTO L;  4C3J L;  4Y52 L;  5FJ8 L;  5M5Y L;  3HOY L;  2WB1 P;  3HKZ P;  3S2H L;  3S1M L;  3GTJ L;  5FLM L;  3S1Q L;  5IYB L;  4X6A L;  1Y1W L;  2NVT L;  2E2I L;  2E2H L;  4A3E L;  3K7A L;  4BBR L;  4A93 L;  3PO3 L;  3FKI L;  2NVQ L;  2WAQ P;  5C44 L;  3HOV L;  1TWH L;  2NVY L;  2PMZ P;  2VUM L;  4QIW P;  1SFO L;  3H0G L;  4A3M L;  3GTQ L;  4BXX L;  4C3I L;  5M5X L;  4BY7 L;  3CQZ L;  3HOW L;  3GTP L;  4A3L L;  2E2J L;  5IP7 L;  2JA7 L;  2R93 L;  3GTG L;  4Y7N L;  3S14 L;  1Y1V L;  3S15 L;  3S16 L;  1TWG L;  2YU9 L;  2B63 L;  1WCM L;  2JA5 L;  5C4J L;  4A3K L;  5IP9 L;  5M3M L;  3HOU L;  3I4N L;  3S17 L;  4AYB P;  3RZD L;  4A3F L;  1I50 L;  3PO2 L;  4BY1 L;  4A3D L;  3S2D L;  5M5W L;  4A3C L;  1I6H L;  3GTL L;  4A3I L;  2JA8 L;  2NVX L;  2R92 L;  4C2M 1;  5IYC L;  3M3Y L;  3M4O L;  3GTK L;  1TWA L;  4BBS L;  3S1N L;  5IYD L;  1I3Q L;  3I4M L;  5C4X L; 
#chains in the Genus database with same CATH topology
 5M3F L;  2Y0S P;  3MQK B;  3QQC E;  4C3H L;  1RDG A;  4JAF A;  4RXN A;  2L0Z A;  4A3J L;  3H3V M;  3KYX A;  2PPT A;  3LWR B;  5K2M E;  2PSM C;  5AI2 A;  1T9Q A;  3GTO L;  3PIP 1;  2M4V A;  4Y52 L;  3P8B A;  4YWM A;  3HOY L;  3HKZ P;  3S1M L;  1S24 A;  3LPE B;  1R0J A;  1WJV A;  3S1Q L;  1Y1W L;  2NVT L;  2AYJ A;  1BFY A;  2HR5 A;  4BBR L;  3RZ6 A;  1PFV A;  2XJS A;  3WWN B;  3KYY A;  3PKI A;  2VUM L;  2XJP A;  2ZIX A;  1SMU A;  5AI3 A;  3GTQ L;  1VZG A;  1SMM A;  4BXX L;  3PZA A;  2M6O A;  1VZH A;  1YK4 A;  2JA7 L;  2R93 L;  1DX8 A;  5IY0 A;  1DVB A;  1Y1V L;  2EY4 E;  3S15 L;  2O5J D;  1B13 A;  1RYT A;  2YU9 L;  3WWL A;  3P2A A;  5C4J L;  5M3M L;  1OWC A;  3SS2 A;  1B2O A;  4AYB P;  1FHH A;  1LTL A;  3HAX C;  2ERJ A;  4JAG A;  1PFY A;  3PO2 L;  4A3D L;  1RDV A;  3LNL A;  1C09 A;  1YK5 A;  5M5W L;  5GAD c;  1I6H L;  2A69 D;  5GAE c;  2CKC A;  3FDJ A;  2NYD A;  3M4O L;  1TWA L;  2CR8 A;  1YUX A;  2XJT A;  1VCX A;  1TWC L;  3HOX L;  5H1S c;  1LKO A;  3S1R L;  3J7Y 1;  4JAE A;  1K83 L;  3HJY B;  4AHY A;  1RB9 A;  4GS7 D;  3KYU A;  3RZO L;  1B2J A;  4JAD A;  1S2Z A;  2AQC A;  1IW7 D;  3ZG6 A;  3A44 A;  1BQ8 A;  2XJU A;  2BE5 D;  2WB1 P;  3VPB E;  4AHW A;  3B0A B;  1ZRP A;  3H9C A;  2J9U B;  3K7A L;  4A93 L;  4B8C D;  3FKI L;  1R0H A;  1YUZ A;  2NVQ L;  2LCQ A;  2K2D A;  3HOV L;  1QQT A;  1TWH L;  2KKD A;  1IU5 A;  4TPU A;  4QIW P;  4AI2 A;  2A6H D;  1NNQ A;  4XGH A;  4C3I L;  5M5X L;  3CQZ L;  3HOW L;  3H9B A;  3PKJ A;  1R0G A;  5IP7 L;  4K9F A;  3PL5 A;  2JA5 L;  3B08 B;  5MFP A;  2APO B;  3H99 A;  5DM6 1;  3KYW A;  5MF6 A;  3S17 L;  3NFP I;  3KYV A;  5AN9 H;  4AHZ A;  4A3F L;  4V19 6;  1QYB A;  4BY1 L;  1YV1 A;  5GAH c;  4AR6 A;  2M4Y A;  4WFN 1;  4A3C L;  3GTL L;  2RFK B;  4ZN3 B;  2R92 L;  2KN9 A;  3GTK L;  2XJR A;  3LWP B;  3S1N L;  1IRO A;  3LWO B;  5EIO C;  2XJQ A;  6RXN A;  1R0F A;  2PVE A;  1JYB A;  3HOZ L;  1T9P A;  4AHX A;  2Z3R B;  2JI2 A;  3H97 A;  3GTM L;  3K35 A;  3PWF A;  2XJV A;  7RXN A;  4ZN1 B;  3RYG A;  3GTJ L;  4AR5 A;  5FLM L;  2M6P A;  1BE7 A;  1PZX A;  5IYB L;  5JVG 1;  1F4L A;  1ODH A;  2E2I L;  2E2H L;  4A3E L;  3MSU A;  1BQ9 A;  3IU3 I;  1BRF A;  3QVD A;  2C6A A;  5C44 L;  4POF A;  2PMZ P;  2PVX A;  1IU6 A;  1SFO L;  1RWD A;  5EIN C;  4A3M L;  2RDV A;  1NXG A;  4U67 1;  1H7V A;  1NXE A;  3GTP L;  8RXN A;  4A3L L;  1CAA A;  2H12 A;  1QCV A;  2B63 L;  1WCM L;  3LWQ B;  1RYQ A;  4A3K L;  2V3B B;  4LHN A;  5RXN A;  5IP9 L;  2ERS A;  3RZT A;  3LWV B;  1I50 L;  3MPS A;  5MFZ A;  2NVX L;  1OWB A;  5IYC L;  3M3Y L;  4BBS L;  3J7Z 1;  1VZI A;  5C4X L;  4POG A;  2CKA A;  3PIO 1;  2R7Z L;  2VL6 A;  2QL0 A;  1TWF L;  5C3E L;  2GMG A;  4XXB B;  4A3G L;  5JVH 1;  2JA6 L;  1E8J A;  4A3B L;  1R9T L;  2A68 D;  4C3J L;  2MS3 A;  4E6Y A;  2C6B A;  5FJ8 L;  5M5Y L;  2JI3 A;  3S2H L;  1LKP A;  4AI0 A;  4X6A L;  4AI3 A;  2JI1 A;  4AR4 A;  1LKM A;  1P7P A;  5MLC 3;  3PO3 L;  1B71 A;  2PYA A;  4LHL A;  2WAQ P;  2AUS B;  5MGN A;  2NVY L;  1Z92 B;  2A6E D;  3H0G L;  4G6B A;  4AI1 A;  2V0E A;  4BY7 L;  1PFW A;  1R0I A;  2E2J L;  3GTG L;  4Y7N L;  4UY8 1;  3S14 L;  2HVY C;  3S16 L;  2Z3Q B;  4YWL A;  1TWG L;  1SMW A;  1T9O A;  1IRN A;  3HOU L;  3I4N L;  3HJW B;  3JR7 A;  3RZD L;  2B5I D;  5DM7 1;  1S30 A;  3S2D L;  1PFU A;  2DSX A;  4ME3 A;  4A3I L;  2JA8 L;  4TVM A;  5GAG c;  4C2M 1;  2V0F A;  1CAD A;  4AR3 A;  1FHM A;  5IYD L;  1I3Q L;  3I4M L; 
#chains in the Genus database with same CATH homology
 1TWC L;  5M3F L;  3HOX L;  2Y0S P;  2R7Z L;  3S1R L;  4C3H L;  1TWF L;  5C3E L;  1K83 L;  4A3G L;  3HOZ L;  4A3J L;  3H3V M;  3RZO L;  2JA6 L;  4A3B L;  3GTM L;  1R9T L;  3GTO L;  4C3J L;  4Y52 L;  5FJ8 L;  5M5Y L;  3HOY L;  2WB1 P;  3HKZ P;  3S2H L;  3S1M L;  3GTJ L;  5FLM L;  3S1Q L;  5IYB L;  4X6A L;  1Y1W L;  2NVT L;  2E2I L;  2E2H L;  4A3E L;  3K7A L;  4BBR L;  4A93 L;  3PO3 L;  3FKI L;  2NVQ L;  2WAQ P;  5C44 L;  3HOV L;  1TWH L;  2NVY L;  2PMZ P;  2VUM L;  4QIW P;  1SFO L;  3H0G L;  4A3M L;  3GTQ L;  4BXX L;  4C3I L;  5M5X L;  4BY7 L;  3CQZ L;  3HOW L;  3GTP L;  4A3L L;  2E2J L;  5IP7 L;  2JA7 L;  2R93 L;  3GTG L;  4Y7N L;  3S14 L;  1Y1V L;  3S15 L;  3S16 L;  1TWG L;  2YU9 L;  2B63 L;  1WCM L;  2JA5 L;  5C4J L;  4A3K L;  5IP9 L;  5M3M L;  3HOU L;  3I4N L;  3S17 L;  4AYB P;  3RZD L;  4A3F L;  1I50 L;  3PO2 L;  4BY1 L;  4A3D L;  3S2D L;  5M5W L;  4A3C L;  1I6H L;  3GTL L;  4A3I L;  2JA8 L;  2NVX L;  2R92 L;  4C2M 1;  5IYC L;  3M3Y L;  3M4O L;  3GTK L;  1TWA L;  4BBS L;  3S1N L;  5IYD L;  1I3Q L;  3I4M L;  5C4X L; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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