2RA9A

Crystal structure of a duf1285 family protein (sbal_2486) from shewanella baltica os155 at 1.40 a resolution
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
127
structure length
127
Chain Sequence
SEVPLFDINALGDWTYLGTSLPAKFAKLFASILHCIDDEYFLITPVEKVRVQVEDAPLLIVDFERAQPHSLLNVSTSIGTLHHNVDIKQMKLTDDSVYLPLERGLWGKLGRACYYNFVNEFNLSDLN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Unknown function
molecule keywords Uncharacterized protein DUF1285
publication title Structures of the first representatives of Pfam family PF06938 (DUF1285) reveal a new fold with repeated structural motifs and possible involvement in signal transduction.
pubmed doi rcsb
source organism Shewanella baltica
total genus 28
structure length 127
sequence length 127
ec nomenclature
pdb deposition date 2007-09-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF06938 DUF1285 Protein of unknown function (DUF1285)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.270.10 Mainly Beta Roll duf1285 protein fold duf1285 protein 2ra9A02
3.10.540.10 Alpha Beta Roll duf1285 like fold duf1285 like domain 2ra9A01
2RE3A 2RA9A
chains in the Genus database with same CATH superfamily
3INAA 2VHQA 3ILRA 1W48A 3IN9A 1W44A 2RE3A 2VHUA 3IMNA 2RA9A 1W49A 4BLSA 4BLTA 1W46A 2VHJA 3IKWA 2VHTA 1W4CA 1W47A 1YWYA 1W4AA 2VHCA 4BLRA 1W4BA
chains in the Genus database with same CATH topology
2RE3A 2RA9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2RE3 A;  2RA9 A; 
#chains in the Genus database with same CATH topology
 3INA A;  2VHQ A;  3ILR A;  1W48 A;  3IN9 A;  1W44 A;  2RE3 A;  2VHU A;  3IMN A;  2RA9 A;  1W49 A;  4BLS A;  4BLT A;  1W46 A;  2VHJ A;  3IKW A;  2VHT A;  1W4C A;  1W47 A;  1YWY A;  1W4A A;  2VHC A;  4BLR A;  1W4B A; 
#chains in the Genus database with same CATH homology
 2RE3 A;  2RA9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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