2RAIA

The px-bar membrane remodeling unit of sorting nexin 9
Total Genus 118
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
118
sequence length
382
structure length
363
Chain Sequence
PGTEQYLLAKQLAKPKEKIPIIVGDYGPMWVYPTSTFDCVVADPSYIEYQLTPTNTNRSVNHRYKHFDWLYERLLVKFGSAIPIPSLPEEFIKMRMERLQAWMTRMCRHPVISESEVFQQFLNFRDEKEWKTGKRKAERDELAGVMIFSTMEPEAPDLDLVEIEQKCEAVGKFTKAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGKALQSLATVFSSSGYQGETDLNDAITEAGKTYEEIASLVAEQPKKDLHFLMECNHEYKGFLGCFPDIIGTHKGAIEKVKESDKLVATSKITLQDKQNMVKRVSIMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQFYETIAEKLRQALSRFPVM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
molecule keywords Sorting nexin-9
publication title The PX-BAR membrane-remodeling unit of sorting nexin 9
pubmed doi rcsb
source organism Homo sapiens
total genus 118
structure length 363
sequence length 382
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-09-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00787 PX PX domain
A PF10456 BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.60 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Arfaptin homology (AH) domain/BAR domain 2raiA03
3.30.1520.10 Alpha Beta 2-Layer Sandwich PX Domain Phox-like domain 2raiA02
4ATMA 2RAJA 2ETTA 2V6VA 1XTNA 2AR5A 1OCSA 1I4DA 4WPCA 1I49A 3QWEA 2Q12A 3HAJA 3IQ2A 2Z0VA 4NQIA 2FICA 4AKVA 4PQOA 2V0OA 3HPBA 4PQPA 2X3WA 3FOGA 2ELBA 4BNEA 3P0CA 2Z0NA 4FZSA 2L73A 1O7KA 4IKDA 3OK8A 4WPEA 4P2JA 3HAHA 3QNIA 2CZOA 4H8SA 3ABHA 1KMDA 3Q0KA 2CSKA 5C5BA 3G9GA 1X03A 2YKTA 2Q13A 2D1LA 4BGJA 2RAIA 3M3WA 3ACOA 3Q84A 3LUIA 3SYVA 4AVMA 2I4KA 1ZWWA 2EFLA 4IKBA 1OCUA 2EFKA 2D4CA 4PZGA 1Y2OA 1WDZA 3I2WA 2WWEA 3PLTA 1KQ6A 4NSWA 1I4LA 4AZ9A 4ON3A 2IWLX 2X3XA 4DYLA 2REDA 2V14A 5C5BB 3QE6A 4OXWA 1I4TA 3HPCX 2REAA 1H6HA 3DYTA 2DYBA 4IKBB 4I1QA 2RAKA 2C08A 3CAZA 4P2IA 1URUA 4DCNC 1XTEA 2Z0OA 4HASA 3SOGA 3LLLA 3HAIA 1X04A 2YPSA 2X3VA 1GD5A
chains in the Genus database with same CATH superfamily
2MI7A 1YWMA 3EJPA 2YLAA 2WYIA 3DPQA 4HR1B 4EZTA 1XTNA 2AR5A 3EJRA 4WPCA 3QWEA 4NQIA 4JL9A 3EJSA 3T48A 1R5EA 4AKVA 2V0OA 3HPBA 4B9QA 2Z0NA 4FZSA 1O7KA 4IWOA 4R5KA 3DX2A 3QA8A 2YL8A 4P2JA 3HAHA 2CZOA 4H8SA 4EZOA 1QWNA 4JWEA 2OBMA 4JWDA 3ERCC 4AZCB 3ER8C 3EJTA 3Q84A 4EZYA 2GA9D 1ZWWA 2D4CA 4FM3A 1O7DC 1WDZA 1OAOA 1KQ6A 4NSWA 1I4LA 3DPPA 4ON3A 2PY6A 3D52A 3DDFA 2F18A 3B53X 3QE6A 3BLBA 1H6HA 4IKBB 4PO2A 3RV1A 4HR1A 2C08A 3EJUA 4H6IA 5FIGA 4EZWA 3GI7A 3D4ZA 3B52X 3CZSA 1SU8A 4R5IA 3O3NB 4ATMA 2V6VA 3B51X 4EZNA 2O0I1 4AZCA 4F01A 2OZNB 1I49A 2Q12A 4FZOA 2X3WA 4HYBA 2ELBA 2WYHA 2YLLA 4HY9A 3BUBA 3L3PA 4R5JA 4IKDA 2OO2A 3I04A 1SU6A 1TQVA 2YI9A 3CVRA 3D2EA 4AZGA 2WINM 3UITA 3D2FA 2Q13A 2F1AA 2D1LA 2GAFD 2RAIA 3M3WA 2EX3B 4H6HA 1HXKA 4AVMA 2I4KA 2EFLA 4IKBA 3BVXA 4IWQA 1E1DA 1TQTA 2QKWA 3I2WA 1U00A 4M0MA 2X3XA 3CZNA 3I01A 4DYLA 2ZXQA 5C5BB 4IWPA 3OWGA 1I4TA 3VKHA 3T47A 1HTYA 3DYTA 3VEBA 2YI8A 2DYBA 3OHXM 1SUFA 2PMRA 4P2IA 4R5LA 4UDXX 4KIKB 2YL6A 4EZVA 4E3CA 2F7QA 3DPOA 1HWWA 1X04A 1DKXA 1GD5A 4EZXA 2QFFA 3D50A 4JLCA 1PS3A 4JWIA 4AZ7A 3DDGA 1I4DA 4F00A 3DX1A 3IQ2A 4AZIA 4BNEA 2GF4A 3BVTA 4WPEA 2YL5A 4IM3A 4IM0A 2ND0A 2F7PA 2ND1A 5KBPA 1GNTA 1KMDA 3Q0KA 4NPHA 2CSKA 5C5BA 2X5CA 3G9GA 3T4AG 5E84A 1X03A 2YIVX 4JWCA 3A98A 4IW0A 3D51A 3DX3A 1TQWA 2ALWA 2OW7A 3SYVA 1GN9A 2EFKA 4EZUA 1UPXA 2WWEA 2FYVA 4R5GA 2YIBA 4AZ9A 4KIKA 1E2UA 3KAVA 3BUQA 5FLEX 2REDA 3CKDA 2V14A 2JNKA 4IM2A 1JQKA 3I39X 2F1BA 4I1QA 3VEAA 4JN4A 4UDYX 2RAKA 3FD9A 1W9MA 1R33A 2KHOA 2YIAA 1URUA 4DCNC 3T49A 4HASA 3LLLA 4G6QA 3LMFA 4EZZA 2N3KA 4EZRA 3ZEDA 2RT6A 2RAJA 3D4YA 2ETTA 1DKZA 1MJGA 3O3OB 1OCSA 1OA0A 3HAJA 3EJQA 2Z0VA 2FICA 2YL9A 4PQOA 4PQPA 1ZYLA 4D8JA 3FOGA 1LQ7A 3P0CA 2L73A 3BVWA 3OK8A 3QNIA 4EZPA 3BVVA 3KAWA 2Z8YA 3ABHA 1QX1A 1TQUA 1QWUA 4AZ6A 4EZQA 3F7WA 2YKTA 4AZBA 2OBLA 1TQSA 4BGJA 3RV0A 3ACOA 3LUIA 4AZHA 2NCZA 3BUDA 1OCUA 4FZPA 4PZGA 1Y2OA 1SU7A 3L3OM 3PLTA 5TKYA 3RPMA 2QXLA 3DX4A 2IWLX 2OW6A 3BUIA 3BUPA 3T46A 3CV5A 4JNFA 4EZSA 2EWFA 3QNJA 4OXWA 1DKYA 3HPCX 3LVTA 2REAA 2LM0A 1E9VA 2F7OA 3O3MB 2LXYA 3C7NA 1OA1A 3CAZA 3BVUA 4JNEA 3ER9B 4E81A 1R34A 1XTEA 2F7RA 2Z0OA 3SOGA 1GNLA 3DX0A 3HAIA 4AZ5A 2YPSA 2X3VA 1O7DB 2JNSA 3KDRA
chains in the Genus database with same CATH topology
4ATMA 2RAJA 2ETTA 2V6VA 1XTNA 2AR5A 1OCSA 1I4DA 4WPCA 1I49A 3QWEA 2Q12A 3HAJA 3IQ2A 2Z0VA 4NQIA 2FICA 4AKVA 4PQOA 2V0OA 3HPBA 4PQPA 2X3WA 3FOGA 2ELBA 4BNEA 3P0CA 2Z0NA 4FZSA 2L73A 1O7KA 4IKDA 3OK8A 4WPEA 4P2JA 3HAHA 3QNIA 2CZOA 4H8SA 3ABHA 1KMDA 3Q0KA 2CSKA 5C5BA 3G9GA 1X03A 2YKTA 2Q13A 2D1LA 4BGJA 2RAIA 3M3WA 3ACOA 3Q84A 3LUIA 3SYVA 4AVMA 2I4KA 1ZWWA 2EFLA 4IKBA 1OCUA 2EFKA 2D4CA 4PZGA 1Y2OA 1WDZA 3I2WA 2WWEA 3PLTA 1KQ6A 4NSWA 1I4LA 4AZ9A 4ON3A 2IWLX 2X3XA 4DYLA 2REDA 2V14A 5C5BB 3QE6A 4OXWA 1I4TA 3HPCX 2REAA 1H6HA 3DYTA 2DYBA 4IKBB 4I1QA 2RAKA 2C08A 3CAZA 4P2IA 1URUA 4DCNC 1XTEA 2Z0OA 4HASA 3SOGA 3LLLA 3HAIA 1X04A 2YPSA 2X3VA 1GD5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ATM A;  2RAJ A;  2ETT A;  2V6V A;  1XTN A;  2AR5 A;  1OCS A;  1I4D A;  4WPC A;  1I49 A;  3QWE A;  2Q12 A;  3HAJ A;  3IQ2 A;  2Z0V A;  4NQI A;  2FIC A;  4AKV A;  4PQO A;  2V0O A;  3HPB A;  4PQP A;  2X3W A;  3FOG A;  2ELB A;  4BNE A;  3P0C A;  2Z0N A;  4FZS A;  2L73 A;  1O7K A;  4IKD A;  3OK8 A;  4WPE A;  4P2J A;  3HAH A;  3QNI A;  2CZO A;  4H8S A;  3ABH A;  1KMD A;  3Q0K A;  2CSK A;  5C5B A;  3G9G A;  1X03 A;  2YKT A;  2Q13 A;  2D1L A;  4BGJ A;  2RAI A;  3M3W A;  3ACO A;  3Q84 A;  3LUI A;  3SYV A;  4AVM A;  2I4K A;  1ZWW A;  2EFL A;  4IKB A;  1OCU A;  2EFK A;  2D4C A;  4PZG A;  1Y2O A;  1WDZ A;  3I2W A;  2WWE A;  3PLT A;  1KQ6 A;  4NSW A;  1I4L A;  4AZ9 A;  4ON3 A;  2IWL X;  2X3X A;  4DYL A;  2RED A;  2V14 A;  5C5B B;  3QE6 A;  4OXW A;  1I4T A;  3HPC X;  2REA A;  1H6H A;  3DYT A;  2DYB A;  4IKB B;  4I1Q A;  2RAK A;  2C08 A;  3CAZ A;  4P2I A;  1URU A;  4DCN C;  1XTE A;  2Z0O A;  4HAS A;  3SOG A;  3LLL A;  3HAI A;  1X04 A;  2YPS A;  2X3V A;  1GD5 A; 
#chains in the Genus database with same CATH topology
 2MI7 A;  1YWM A;  3EJP A;  2YLA A;  2WYI A;  3DPQ A;  4HR1 B;  4EZT A;  1XTN A;  2AR5 A;  3EJR A;  4WPC A;  3QWE A;  4NQI A;  4JL9 A;  3EJS A;  3T48 A;  1R5E A;  4AKV A;  2V0O A;  3HPB A;  4B9Q A;  2Z0N A;  4FZS A;  1O7K A;  4IWO A;  4R5K A;  3DX2 A;  3QA8 A;  2YL8 A;  4P2J A;  3HAH A;  2CZO A;  4H8S A;  4EZO A;  1QWN A;  4JWE A;  2OBM A;  4JWD A;  3ERC C;  4AZC B;  3ER8 C;  3EJT A;  3Q84 A;  4EZY A;  2GA9 D;  1ZWW A;  2D4C A;  4FM3 A;  1O7D C;  1WDZ A;  1OAO A;  1KQ6 A;  4NSW A;  1I4L A;  3DPP A;  4ON3 A;  2PY6 A;  3D52 A;  3DDF A;  2F18 A;  3B53 X;  3QE6 A;  3BLB A;  1H6H A;  4IKB B;  4PO2 A;  3RV1 A;  4HR1 A;  2C08 A;  3EJU A;  4H6I A;  5FIG A;  4EZW A;  3GI7 A;  3D4Z A;  3B52 X;  3CZS A;  1SU8 A;  4R5I A;  3O3N B;  4ATM A;  2V6V A;  3B51 X;  4EZN A;  2O0I 1;  4AZC A;  4F01 A;  2OZN B;  1I49 A;  2Q12 A;  4FZO A;  2X3W A;  4HYB A;  2ELB A;  2WYH A;  2YLL A;  4HY9 A;  3BUB A;  3L3P A;  4R5J A;  4IKD A;  2OO2 A;  3I04 A;  1SU6 A;  1TQV A;  2YI9 A;  3CVR A;  3D2E A;  4AZG A;  2WIN M;  3UIT A;  3D2F A;  2Q13 A;  2F1A A;  2D1L A;  2GAF D;  2RAI A;  3M3W A;  2EX3 B;  4H6H A;  1HXK A;  4AVM A;  2I4K A;  2EFL A;  4IKB A;  3BVX A;  4IWQ A;  1E1D A;  1TQT A;  2QKW A;  3I2W A;  1U00 A;  4M0M A;  2X3X A;  3CZN A;  3I01 A;  4DYL A;  2ZXQ A;  5C5B B;  4IWP A;  3OWG A;  1I4T A;  3VKH A;  3T47 A;  1HTY A;  3DYT A;  3VEB A;  2YI8 A;  2DYB A;  3OHX M;  1SUF A;  2PMR A;  4P2I A;  4R5L A;  4UDX X;  4KIK B;  2YL6 A;  4EZV A;  4E3C A;  2F7Q A;  3DPO A;  1HWW A;  1X04 A;  1DKX A;  1GD5 A;  4EZX A;  2QFF A;  3D50 A;  4JLC A;  1PS3 A;  4JWI A;  4AZ7 A;  3DDG A;  1I4D A;  4F00 A;  3DX1 A;  3IQ2 A;  4AZI A;  4BNE A;  2GF4 A;  3BVT A;  4WPE A;  2YL5 A;  4IM3 A;  4IM0 A;  2ND0 A;  2F7P A;  2ND1 A;  5KBP A;  1GNT A;  1KMD A;  3Q0K A;  4NPH A;  2CSK A;  5C5B A;  2X5C A;  3G9G A;  3T4A G;  5E84 A;  1X03 A;  2YIV X;  4JWC A;  3A98 A;  4IW0 A;  3D51 A;  3DX3 A;  1TQW A;  2ALW A;  2OW7 A;  3SYV A;  1GN9 A;  2EFK A;  4EZU A;  1UPX A;  2WWE A;  2FYV A;  4R5G A;  2YIB A;  4AZ9 A;  4KIK A;  1E2U A;  3KAV A;  3BUQ A;  5FLE X;  2RED A;  3CKD A;  2V14 A;  2JNK A;  4IM2 A;  1JQK A;  3I39 X;  2F1B A;  4I1Q A;  3VEA A;  4JN4 A;  4UDY X;  2RAK A;  3FD9 A;  1W9M A;  1R33 A;  2KHO A;  2YIA A;  1URU A;  4DCN C;  3T49 A;  4HAS A;  3LLL A;  4G6Q A;  3LMF A;  4EZZ A;  2N3K A;  4EZR A;  3ZED A;  2RT6 A;  2RAJ A;  3D4Y A;  2ETT A;  1DKZ A;  1MJG A;  3O3O B;  1OCS A;  1OA0 A;  3HAJ A;  3EJQ A;  2Z0V A;  2FIC A;  2YL9 A;  4PQO A;  4PQP A;  1ZYL A;  4D8J A;  3FOG A;  1LQ7 A;  3P0C A;  2L73 A;  3BVW A;  3OK8 A;  3QNI A;  4EZP A;  3BVV A;  3KAW A;  2Z8Y A;  3ABH A;  1QX1 A;  1TQU A;  1QWU A;  4AZ6 A;  4EZQ A;  3F7W A;  2YKT A;  4AZB A;  2OBL A;  1TQS A;  4BGJ A;  3RV0 A;  3ACO A;  3LUI A;  4AZH A;  2NCZ A;  3BUD A;  1OCU A;  4FZP A;  4PZG A;  1Y2O A;  1SU7 A;  3L3O M;  3PLT A;  5TKY A;  3RPM A;  2QXL A;  3DX4 A;  2IWL X;  2OW6 A;  3BUI A;  3BUP A;  3T46 A;  3CV5 A;  4JNF A;  4EZS A;  2EWF A;  3QNJ A;  4OXW A;  1DKY A;  3HPC X;  3LVT A;  2REA A;  2LM0 A;  1E9V A;  2F7O A;  3O3M B;  2LXY A;  3C7N A;  1OA1 A;  3CAZ A;  3BVU A;  4JNE A;  3ER9 B;  4E81 A;  1R34 A;  1XTE A;  2F7R A;  2Z0O A;  3SOG A;  1GNL A;  3DX0 A;  3HAI A;  4AZ5 A;  2YPS A;  2X3V A;  1O7D B;  2JNS A;  3KDR A; 
#chains in the Genus database with same CATH homology
 4ATM A;  2RAJ A;  2ETT A;  2V6V A;  1XTN A;  2AR5 A;  1OCS A;  1I4D A;  4WPC A;  1I49 A;  3QWE A;  2Q12 A;  3HAJ A;  3IQ2 A;  2Z0V A;  4NQI A;  2FIC A;  4AKV A;  4PQO A;  2V0O A;  3HPB A;  4PQP A;  2X3W A;  3FOG A;  2ELB A;  4BNE A;  3P0C A;  2Z0N A;  4FZS A;  2L73 A;  1O7K A;  4IKD A;  3OK8 A;  4WPE A;  4P2J A;  3HAH A;  3QNI A;  2CZO A;  4H8S A;  3ABH A;  1KMD A;  3Q0K A;  2CSK A;  5C5B A;  3G9G A;  1X03 A;  2YKT A;  2Q13 A;  2D1L A;  4BGJ A;  2RAI A;  3M3W A;  3ACO A;  3Q84 A;  3LUI A;  3SYV A;  4AVM A;  2I4K A;  1ZWW A;  2EFL A;  4IKB A;  1OCU A;  2EFK A;  2D4C A;  4PZG A;  1Y2O A;  1WDZ A;  3I2W A;  2WWE A;  3PLT A;  1KQ6 A;  4NSW A;  1I4L A;  4AZ9 A;  4ON3 A;  2IWL X;  2X3X A;  4DYL A;  2RED A;  2V14 A;  5C5B B;  3QE6 A;  4OXW A;  1I4T A;  3HPC X;  2REA A;  1H6H A;  3DYT A;  2DYB A;  4IKB B;  4I1Q A;  2RAK A;  2C08 A;  3CAZ A;  4P2I A;  1URU A;  4DCN C;  1XTE A;  2Z0O A;  4HAS A;  3SOG A;  3LLL A;  3HAI A;  1X04 A;  2YPS A;  2X3V A;  1GD5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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