2RJIA

Malarial eba-175 region vi crystallographic structure reveals a kix-like binding interface
Total Genus 33
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
84
structure length
84
Chain Sequence
DDSTTKELIKKLAEINKCENEISAKYCDHMIHEEIPLKTCTKEKTRNLCCAVSDYCMSYFTYDSEEYYDCTKREFDDPSYTCFR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein transport, cell invasion
molecule keywords Erythrocyte binding antigen 175
publication title Malarial EBA-175 Region VI Crystallographic Structure Reveals a KIX-Like Binding Interface
pubmed doi rcsb
source organism Plasmodium falciparum
total genus 33
structure length 84
sequence length 84
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-10-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF11556 EBA-175_VI Erythrocyte binding antigen 175
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1740.170 Mainly Alpha Orthogonal Bundle Rna Polymerase Sigma Factor; Chain: A Rna Polymerase Sigma Factor; Chain: A 2rjiA00
2RJIA
chains in the Genus database with same CATH superfamily
4RSYA 1S46A 3CZEA 4X2UA 3B37A 1GW6A 1ONNA 3UEQA 4BKXA 2FFLA 1R0KA 5FWQA 3B7RL 3RC8A 5DLLA 3QJXA 3ANNA 5HNFA 2JCYA 2R59A 3FUJA 4A03A 4XN1A 4Q4EA 3WQQA 2HPTA 3B2PA 4DPRA 2GTQA 2EGHA 3CHPA 2JD1A 2WPGA 3FTVA 2DQ6A 3T8VA 2DQMA 2HPOA 4XN7A 4J3BA 4ZX6A 5JC1A 4PU2A 5HLTA 4XNBA 4XO4A 1R0LA 3EBHA 4K5NA 4XO3A 3CHOA 4ZW6A 4K5PA 4ZX4A 5JNLA 3RASA 3B34A 4QHPA 2QVWA 4XMTA 1Q0QA 1RP3A 3B7TA 1X3WA 4K5LA 3FUFA 5JMWA 2JV7A 4ZQTA 3FTWA 3FUIA 1G5AA 3B2XA 4XN8A 4XMXA 4JNDA 3ZI0A 3VVMA 2WZFA 4FLOA 3ANMA 2MAPA 4ZW8A 1K5HA 3EBGA 4K5MA 3FTXA 4XMZA 4ZW5A 1MW2A 3A06A 3CXBA 1H3LA 4QMEA 3AU9A 3AUAA 3FUNA 3WQRA 4R7LA 4ZQFA 2Y1GA 2WZGA 3FULA 4OOEA 3FTZA 3FU6A 4OOFA 3FUHA 3Q43A 3VVLA 3B7SA 3Q44A 1Q0LA 3RC3A 4AR8A 5JMPA 3CZKA 3FU0A 4FLRA 4AICA 2JD0A 4R5TA 2XPYA 1OR7A 2XPZA 3FU3A 2Y1EA 4NQWA 3HW2A 4PW4A 2PGGA 3CZGA 4RVBA 3WQSB 3FUDA 4MS6A 3UCQA 3A14A 1ZS2A 2PUSA 3T0YA 1H19A 2B61A 4AYSA 2VJ8A 4GAEA 4Y67A 4ZW7A 4XMUA 4PVBA 3FU5A 2C82A 4XN4A 3KEDA 5JBIA 3JT1A 3ZHXA 4XN2A 4ARFA 1SG7A 4Y6RA 4L2LA 3FTUA 4Y6SA 3ZHZA 4R5VA 3FTYA 1ONPA 4XN9A 5DULA 3FUKA 3IIEA 4LUPA 4MKTA 2R72A 3FH5A 4ZQHA 4K5OA 4GAAA 4ZX5A 4XNAA 2Y1DA 5JAZA 4CXFA 4AR1A 2XQ0A 1JGIA 3FUMA 2C5ZA 1JG9A 1JVSA 4XMWA 3CHRA 4ZQGA 1MW3A 3PUUA 4ZX3A 5EV7A 3EBIA 4QIRA 2QJ1A 2O7GA 3FH8A 4FLSA 3UERA 2ZXGA 2Y1CA 1MW0A 3FUEA 5HNHA 2PL5A 4XMVA 3FH7A 3U9WA 2JCVA 5JO0A 3CHQA 3CIAA 4FCAA 5AENA 1HS6A 1X3ZA 2Y1FA 2MAOA 3JSZA 3CHSA 3R0IA 4RCVA 4QPEA 4KP7A 3FTSA 2R70A 4QUOA 2RJIA 1SC5A 3CZLA 4XNDA 4Q4IA 2JCXA 1MW1A 1SQMA 4XO5A 3ANLA 4ZW3A 1MVYA 2JD2A 3ZHYA 1Q0HA 4ZQEA 4XN5A 2VLAA 4R5XA 3B7UX 3FHEA 4AR9A 2A7OA 4ZN6A 1T1RA 5DYFA 4FLQA 3B3BA 5BPPA 4Y6PA 1T1SA 1ONOA 3AU8A
chains in the Genus database with same CATH topology
4RSYA 1S46A 3CZEA 4X2UA 3B37A 1GW6A 1ONNA 3UEQA 4BKXA 2FFLA 1R0KA 5FWQA 3B7RL 3RC8A 5DLLA 3QJXA 3ANNA 5HNFA 2JCYA 2R59A 3FUJA 4A03A 4XN1A 4Q4EA 3WQQA 2HPTA 3B2PA 4DPRA 2GTQA 2EGHA 3CHPA 2JD1A 2WPGA 3FTVA 2DQ6A 3T8VA 2DQMA 2HPOA 4XN7A 4J3BA 4ZX6A 5JC1A 4PU2A 5HLTA 4XNBA 4XO4A 1R0LA 3EBHA 4K5NA 4XO3A 3CHOA 4ZW6A 4K5PA 4ZX4A 5JNLA 3RASA 3B34A 4QHPA 2QVWA 4XMTA 1Q0QA 1RP3A 3B7TA 1X3WA 4K5LA 3FUFA 5JMWA 2JV7A 4ZQTA 3FTWA 3FUIA 1G5AA 3B2XA 4XN8A 4XMXA 4JNDA 3ZI0A 3VVMA 2WZFA 4FLOA 3ANMA 2MAPA 4ZW8A 1K5HA 3EBGA 4K5MA 3FTXA 4XMZA 4ZW5A 1MW2A 3A06A 1H3LA 4QMEA 3AU9A 3AUAA 3FUNA 3WQRA 4R7LA 4ZQFA 2Y1GA 2WZGA 3FULA 4OOEA 3FTZA 3FU6A 4OOFA 3FUHA 3Q43A 3VVLA 3B7SA 3Q44A 1Q0LA 3RC3A 4AR8A 5JMPA 3CZKA 3FU0A 4FLRA 4AICA 2JD0A 4R5TA 2XPYA 1OR7A 2XPZA 3FU3A 2Y1EA 4NQWA 4PW4A 3WQSB 2PGGA 3CZGA 4RVBA 5BPPA 3FUDA 4MS6A 3UCQA 3A14A 1ZS2A 2PUSA 3T0YA 1H19A 2B61A 4AYSA 2VJ8A 4GAEA 4Y67A 4ZW7A 4XMUA 4PVBA 3FU5A 2C82A 4XN4A 3KEDA 5JBIA 3JT1A 3ZHXA 4XN2A 4ARFA 1SG7A 4Y6RA 4L2LA 3FTUA 4Y6SA 3ZHZA 4R5VA 3FTYA 1ONPA 4XN9A 5DULA 3FUKA 3IIEA 4LUPA 4MKTA 2R72A 3FH5A 4ZQHA 4K5OA 4GAAA 4ZX5A 4XNAA 2Y1DA 5JAZA 4CXFA 4AR1A 2XQ0A 1JGIA 3FUMA 2C5ZA 1JG9A 1JVSA 4XMWA 3CHRA 4ZQGA 1MW3A 3PUUA 4ZX3A 5EV7A 3EBIA 4QIRA 2QJ1A 2O7GA 3FH8A 4FLSA 3UERA 2ZXGA 2Y1CA 1MW0A 3FUEA 5HNHA 2PL5A 4XMVA 3FH7A 3U9WA 2JCVA 5JO0A 3CHQA 3CIAA 4FCAA 5AENA 1HS6A 1X3ZA 2Y1FA 2MAOA 3JSZA 3CHSA 3R0IA 4RCVA 4QPEA 4KP7A 3FTSA 2R70A 4QUOA 2RJIA 1SC5A 3CZLA 4XNDA 4Q4IA 2JCXA 1MW1A 1SQMA 4XO5A 3ANLA 4ZW3A 1MVYA 2JD2A 3ZHYA 1Q0HA 4ZQEA 4XN5A 2VLAA 4R5XA 3B7UX 3FHEA 4AR9A 2A7OA 4ZN6A 1T1RA 5DYFA 4FLQA 3B3BA 4Y6PA 1T1SA 1ONOA 3AU8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2RJI A; 
#chains in the Genus database with same CATH topology
 4RSY A;  1S46 A;  3CZE A;  4X2U A;  3B37 A;  1GW6 A;  1ONN A;  3UEQ A;  4BKX A;  2FFL A;  1R0K A;  5FWQ A;  3B7R L;  3RC8 A;  5DLL A;  3QJX A;  3ANN A;  5HNF A;  2JCY A;  2R59 A;  3FUJ A;  4A03 A;  4XN1 A;  4Q4E A;  3WQQ A;  2HPT A;  3B2P A;  4DPR A;  2GTQ A;  2EGH A;  3CHP A;  2JD1 A;  2WPG A;  3FTV A;  2DQ6 A;  3T8V A;  2DQM A;  2HPO A;  4XN7 A;  4J3B A;  4ZX6 A;  5JC1 A;  4PU2 A;  5HLT A;  4XNB A;  4XO4 A;  1R0L A;  3EBH A;  4K5N A;  4XO3 A;  3CHO A;  4ZW6 A;  4K5P A;  4ZX4 A;  5JNL A;  3RAS A;  3B34 A;  4QHP A;  2QVW A;  4XMT A;  1Q0Q A;  1RP3 A;  3B7T A;  1X3W A;  4K5L A;  3FUF A;  5JMW A;  2JV7 A;  4ZQT A;  3FTW A;  3FUI A;  1G5A A;  3B2X A;  4XN8 A;  4XMX A;  4JND A;  3ZI0 A;  3VVM A;  2WZF A;  4FLO A;  3ANM A;  2MAP A;  4ZW8 A;  1K5H A;  3EBG A;  4K5M A;  3FTX A;  4XMZ A;  4ZW5 A;  1MW2 A;  3A06 A;  3CXB A;  1H3L A;  4QME A;  3AU9 A;  3AUA A;  3FUN A;  3WQR A;  4R7L A;  4ZQF A;  2Y1G A;  2WZG A;  3FUL A;  4OOE A;  3FTZ A;  3FU6 A;  4OOF A;  3FUH A;  3Q43 A;  3VVL A;  3B7S A;  3Q44 A;  1Q0L A;  3RC3 A;  4AR8 A;  5JMP A;  3CZK A;  3FU0 A;  4FLR A;  4AIC A;  2JD0 A;  4R5T A;  2XPY A;  1OR7 A;  2XPZ A;  3FU3 A;  2Y1E A;  4NQW A;  3HW2 A;  4PW4 A;  2PGG A;  3CZG A;  4RVB A;  3WQS B;  3FUD A;  4MS6 A;  3UCQ A;  3A14 A;  1ZS2 A;  2PUS A;  3T0Y A;  1H19 A;  2B61 A;  4AYS A;  2VJ8 A;  4GAE A;  4Y67 A;  4ZW7 A;  4XMU A;  4PVB A;  3FU5 A;  2C82 A;  4XN4 A;  3KED A;  5JBI A;  3JT1 A;  3ZHX A;  4XN2 A;  4ARF A;  1SG7 A;  4Y6R A;  4L2L A;  3FTU A;  4Y6S A;  3ZHZ A;  4R5V A;  3FTY A;  1ONP A;  4XN9 A;  5DUL A;  3FUK A;  3IIE A;  4LUP A;  4MKT A;  2R72 A;  3FH5 A;  4ZQH A;  4K5O A;  4GAA A;  4ZX5 A;  4XNA A;  2Y1D A;  5JAZ A;  4CXF A;  4AR1 A;  2XQ0 A;  1JGI A;  3FUM A;  2C5Z A;  1JG9 A;  1JVS A;  4XMW A;  3CHR A;  4ZQG A;  1MW3 A;  3PUU A;  4ZX3 A;  5EV7 A;  3EBI A;  4QIR A;  2QJ1 A;  2O7G A;  3FH8 A;  4FLS A;  3UER A;  2ZXG A;  2Y1C A;  1MW0 A;  3FUE A;  5HNH A;  2PL5 A;  4XMV A;  3FH7 A;  3U9W A;  2JCV A;  5JO0 A;  3CHQ A;  3CIA A;  4FCA A;  5AEN A;  1HS6 A;  1X3Z A;  2Y1F A;  2MAO A;  3JSZ A;  3CHS A;  3R0I A;  4RCV A;  4QPE A;  4KP7 A;  3FTS A;  2R70 A;  4QUO A;  2RJI A;  1SC5 A;  3CZL A;  4XND A;  4Q4I A;  2JCX A;  1MW1 A;  1SQM A;  4XO5 A;  3ANL A;  4ZW3 A;  1MVY A;  2JD2 A;  3ZHY A;  1Q0H A;  4ZQE A;  4XN5 A;  2VLA A;  4R5X A;  3B7U X;  3FHE A;  4AR9 A;  2A7O A;  4ZN6 A;  1T1R A;  5DYF A;  4FLQ A;  3B3B A;  5BPP A;  4Y6P A;  1T1S A;  1ONO A;  3AU8 A; 
#chains in the Genus database with same CATH homology
 4RSY A;  1S46 A;  3CZE A;  4X2U A;  3B37 A;  1GW6 A;  1ONN A;  3UEQ A;  4BKX A;  2FFL A;  1R0K A;  5FWQ A;  3B7R L;  3RC8 A;  5DLL A;  3QJX A;  3ANN A;  5HNF A;  2JCY A;  2R59 A;  3FUJ A;  4A03 A;  4XN1 A;  4Q4E A;  3WQQ A;  2HPT A;  3B2P A;  4DPR A;  2GTQ A;  2EGH A;  3CHP A;  2JD1 A;  2WPG A;  3FTV A;  2DQ6 A;  3T8V A;  2DQM A;  2HPO A;  4XN7 A;  4J3B A;  4ZX6 A;  5JC1 A;  4PU2 A;  5HLT A;  4XNB A;  4XO4 A;  1R0L A;  3EBH A;  4K5N A;  4XO3 A;  3CHO A;  4ZW6 A;  4K5P A;  4ZX4 A;  5JNL A;  3RAS A;  3B34 A;  4QHP A;  2QVW A;  4XMT A;  1Q0Q A;  1RP3 A;  3B7T A;  1X3W A;  4K5L A;  3FUF A;  5JMW A;  2JV7 A;  4ZQT A;  3FTW A;  3FUI A;  1G5A A;  3B2X A;  4XN8 A;  4XMX A;  4JND A;  3ZI0 A;  3VVM A;  2WZF A;  4FLO A;  3ANM A;  2MAP A;  4ZW8 A;  1K5H A;  3EBG A;  4K5M A;  3FTX A;  4XMZ A;  4ZW5 A;  1MW2 A;  3A06 A;  1H3L A;  4QME A;  3AU9 A;  3AUA A;  3FUN A;  3WQR A;  4R7L A;  4ZQF A;  2Y1G A;  2WZG A;  3FUL A;  4OOE A;  3FTZ A;  3FU6 A;  4OOF A;  3FUH A;  3Q43 A;  3VVL A;  3B7S A;  3Q44 A;  1Q0L A;  3RC3 A;  4AR8 A;  5JMP A;  3CZK A;  3FU0 A;  4FLR A;  4AIC A;  2JD0 A;  4R5T A;  2XPY A;  1OR7 A;  2XPZ A;  3FU3 A;  2Y1E A;  4NQW A;  4PW4 A;  3WQS B;  2PGG A;  3CZG A;  4RVB A;  5BPP A;  3FUD A;  4MS6 A;  3UCQ A;  3A14 A;  1ZS2 A;  2PUS A;  3T0Y A;  1H19 A;  2B61 A;  4AYS A;  2VJ8 A;  4GAE A;  4Y67 A;  4ZW7 A;  4XMU A;  4PVB A;  3FU5 A;  2C82 A;  4XN4 A;  3KED A;  5JBI A;  3JT1 A;  3ZHX A;  4XN2 A;  4ARF A;  1SG7 A;  4Y6R A;  4L2L A;  3FTU A;  4Y6S A;  3ZHZ A;  4R5V A;  3FTY A;  1ONP A;  4XN9 A;  5DUL A;  3FUK A;  3IIE A;  4LUP A;  4MKT A;  2R72 A;  3FH5 A;  4ZQH A;  4K5O A;  4GAA A;  4ZX5 A;  4XNA A;  2Y1D A;  5JAZ A;  4CXF A;  4AR1 A;  2XQ0 A;  1JGI A;  3FUM A;  2C5Z A;  1JG9 A;  1JVS A;  4XMW A;  3CHR A;  4ZQG A;  1MW3 A;  3PUU A;  4ZX3 A;  5EV7 A;  3EBI A;  4QIR A;  2QJ1 A;  2O7G A;  3FH8 A;  4FLS A;  3UER A;  2ZXG A;  2Y1C A;  1MW0 A;  3FUE A;  5HNH A;  2PL5 A;  4XMV A;  3FH7 A;  3U9W A;  2JCV A;  5JO0 A;  3CHQ A;  3CIA A;  4FCA A;  5AEN A;  1HS6 A;  1X3Z A;  2Y1F A;  2MAO A;  3JSZ A;  3CHS A;  3R0I A;  4RCV A;  4QPE A;  4KP7 A;  3FTS A;  2R70 A;  4QUO A;  2RJI A;  1SC5 A;  3CZL A;  4XND A;  4Q4I A;  2JCX A;  1MW1 A;  1SQM A;  4XO5 A;  3ANL A;  4ZW3 A;  1MVY A;  2JD2 A;  3ZHY A;  1Q0H A;  4ZQE A;  4XN5 A;  2VLA A;  4R5X A;  3B7U X;  3FHE A;  4AR9 A;  2A7O A;  4ZN6 A;  1T1R A;  5DYF A;  4FLQ A;  3B3B A;  4Y6P A;  1T1S A;  1ONO A;  3AU8 A; 
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similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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