2RQAA

Solution structure of lgp2 ctd
Total Genus 14
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
14
sequence length
137
structure length
137
Chain Sequence
GPHMQFPVEHVQLLCINCMVAVGHGSDLRKVEGTHHVNVNPNFSNYYNVSRDPVVINKVFKDWKPGGVISCRNCGEVWGLQMIYKSVKLPVLKVRSMLLETPQGRIQAKKWSRVPFSVPDFDFLQHCAENLSDLSLD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords ATP-dependent RNA helicase DHX58
publication title Solution Structures of Cytosolic RNA Sensor MDA5 and LGP2 C-terminal Domains: IDENTIFICATION OF THE RNA RECOGNITION LOOP IN RIG-I-LIKE RECEPTORS
pubmed doi rcsb
source organism Homo sapiens
total genus 14
structure length 137
sequence length 137
ec nomenclature ec 3.6.4.13: RNA helicase.
pdb deposition date 2009-03-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF11648 RIG-I_C-RD C-terminal domain of RIG-I
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.150.30 Mainly Beta Beta Complex Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A 2rqaA00
2RQBA 3LRRA 3GA3A 4A2XA 2YKGA 3OG8A 3ZD6A 4AY2A 3LRNA 2QFDA 3ZD7A 5F9FA 5E3HA 2W4RA 3EQTA 2RQAA 4A2VA 4BPBA 5F9HA 2RMJA 3NCUA 2QFBA 5F98A
chains in the Genus database with same CATH superfamily
3EBMA 2RQBA 3LRRA 5F98A 3GA3A 4A2XA 2HR9A 4V30A 2YKGA 3ZD6A 3OG8A 2K8DA 4AY2A 1YZ1A 3HCJA 3WX2A 1FWQA 1HXRA 3E0OA 3HCGA 3LRNA 1L1DA 3E0MA 2LOYA 3WX1A 3DJMA 4TZCA 5E3HA 3ZD7A 5F9FA 2KWBA 4CI1B 3CXKA 2W4RA 1H6QA 4V31A 5AMHA 2KZNA 1H7YA 3CEZA 4CI3B 3EQTA 2RQAA 1TXJA 4V2ZA 2LVLA 4CI2B 4TZUA 2FU5A 2KV1A 4A2VA 4BPBA 5F9HA 2RMJA 3NCUA 4TZ4C 4V2YA 3FACA 3HCHA 2QFBA 3HCIA 3P3KA 2QFDA 3MAOA
chains in the Genus database with same CATH topology
3EBMA 2RQBA 3LRRA 5F98A 3GA3A 4A2XA 2HR9A 2YKGA 3OG8A 3ZD6A 4AY2A 1YZ1A 1FWQA 1HXRA 3LRNA 2LOYA 3DJMA 3ZD7A 5E3HA 5F9FA 2KWBA 2W4RA 1H6QA 1H7YA 3EQTA 2RQAA 1TXJA 2LVLA 2FU5A 4A2VA 4BPBA 5F9HA 2RMJA 3NCUA 3FACA 2QFBA 3P3KA 2QFDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2RQB A;  3LRR A;  3GA3 A;  4A2X A;  2YKG A;  3OG8 A;  3ZD6 A;  4AY2 A;  3LRN A;  2QFD A;  3ZD7 A;  5F9F A;  5E3H A;  2W4R A;  3EQT A;  2RQA A;  4A2V A;  4BPB A;  5F9H A;  2RMJ A;  3NCU A;  2QFB A;  5F98 A; 
#chains in the Genus database with same CATH topology
 3EBM A;  2RQB A;  3LRR A;  5F98 A;  3GA3 A;  4A2X A;  2HR9 A;  4V30 A;  2YKG A;  3ZD6 A;  3OG8 A;  2K8D A;  4AY2 A;  1YZ1 A;  3HCJ A;  3WX2 A;  1FWQ A;  1HXR A;  3E0O A;  3HCG A;  3LRN A;  1L1D A;  3E0M A;  2LOY A;  3WX1 A;  3DJM A;  4TZC A;  5E3H A;  3ZD7 A;  5F9F A;  2KWB A;  4CI1 B;  3CXK A;  2W4R A;  1H6Q A;  4V31 A;  5AMH A;  2KZN A;  1H7Y A;  3CEZ A;  4CI3 B;  3EQT A;  2RQA A;  1TXJ A;  4V2Z A;  2LVL A;  4CI2 B;  4TZU A;  2FU5 A;  2KV1 A;  4A2V A;  4BPB A;  5F9H A;  2RMJ A;  3NCU A;  4TZ4 C;  4V2Y A;  3FAC A;  3HCH A;  2QFB A;  3HCI A;  3P3K A;  2QFD A;  3MAO A; 
#chains in the Genus database with same CATH homology
 3EBM A;  2RQB A;  3LRR A;  5F98 A;  3GA3 A;  4A2X A;  2HR9 A;  2YKG A;  3OG8 A;  3ZD6 A;  4AY2 A;  1YZ1 A;  1FWQ A;  1HXR A;  3LRN A;  2LOY A;  3DJM A;  3ZD7 A;  5E3H A;  5F9F A;  2KWB A;  2W4R A;  1H6Q A;  1H7Y A;  3EQT A;  2RQA A;  1TXJ A;  2LVL A;  2FU5 A;  4A2V A;  4BPB A;  5F9H A;  2RMJ A;  3NCU A;  3FAC A;  2QFB A;  3P3K A;  2QFD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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