2V68I

Crystal structure of chlamydomonas reinhardtii rubisco with large- subunit mutations v331a, t342i
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
139
structure length
139
Chain Sequence
MVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRPKTARDFQPANKRSV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN
publication title Structural Analysis of Altered Large-Subunit Loop-6-Carboxy-Terminus Interactions that Influence Catalytic Efficiency and Co2 O2 Specificity of Ribulose-1,5-Bisphosphate Carboxylase Oxygenase
pubmed doi rcsb
source organism Chlamydomonas reinhardtii
total genus 30
structure length 139
sequence length 139
chains with identical sequence J, K, L, M, N, O, P
ec nomenclature ec 4.1.1.39: Ribulose-bisphosphate carboxylase.
pdb deposition date 2007-07-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
I PF00101 RuBisCO_small Ribulose bisphosphate carboxylase, small chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunit 2v68I00
3AXMS 8RUCI 1UPPI 2V67I 1SVDM 3RUBS 1RXOC 1RLCS 1AUSS 1AA1C 2V63I 1RSCI 1EJ7S 4F0MB 2V6AI 4F0HB 1GK8I 1RBLI 4RUBS 1RLDS 3AXKS 2VDII 1IR21 4MKVS 1IWAB 2V68I 2V69I 1RBOC 1UW9C 1UPMC 1BXNI 1UZDC 1WDDS 4HHHS 3ZXWB 2VDHI 1UZHC 4F0KB 1UWAC 1RCXC 1IR1S 1RCOC 1BWVS 2YBVB
chains in the Genus database with same CATH superfamily
3TG8A 3AXMS 4F9TA 8RUCI 1UPPI 2V67I 3UMYA 2FHZA 1SVDM 3RUBS 1RXOC 1RLCS 1AUSS 3FPNA 1DWUA 1AA1C 2V63I 4LQ4A 1RSCI 1CJSA 3U56A 3QOYA 4QG3A 1EJ7S 5DM60 4REOA 4F0MB 1I2AA 1ZHOA 2V6AI 4F0HB 1GK8I 1RBLI 4RUBS 1RLDS 3AXKS 2VDII 1U63A 3ZQJA 1IR21 4MKVS 1IWAB 2V68I 2DFXI 4QVIA 2V69I 1RBOC 1UW9C 1UPMC 1BXNI 1UZDC 1WDDS 4HHHS 3ZXWB 2VDHI 1UZHC 4QGBA 4F0KB 1UWAC 1MZPA 1RCXC 1IR1S 3U4MA 1RCOC 2HW8A 1BWVS 2YBVB 4DFCB 1AD2A 5DM70
chains in the Genus database with same CATH topology
3AXMS 8RUCI 1UPPI 2V67I 1SVDM 3RUBS 1RXOC 1RLCS 1AUSS 1AA1C 2V63I 1RSCI 1EJ7S 4F0MB 2V6AI 4F0HB 1GK8I 1RBLI 4RUBS 1RLDS 3AXKS 2VDII 1IR21 4MKVS 1IWAB 2V68I 2V69I 1RBOC 1UW9C 1UPMC 1BXNI 1UZDC 1WDDS 4HHHS 3ZXWB 2VDHI 1UZHC 4F0KB 1UWAC 1RCXC 1IR1S 1RCOC 1BWVS 2YBVB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AXM S;  8RUC I;  1UPP I;  2V67 I;  1SVD M;  3RUB S;  1RXO C;  1RLC S;  1AUS S;  1AA1 C;  2V63 I;  1RSC I;  1EJ7 S;  4F0M B;  2V6A I;  4F0H B;  1GK8 I;  1RBL I;  4RUB S;  1RLD S;  3AXK S;  2VDI I;  1IR2 1;  4MKV S;  1IWA B;  2V68 I;  2V69 I;  1RBO C;  1UW9 C;  1UPM C;  1BXN I;  1UZD C;  1WDD S;  4HHH S;  3ZXW B;  2VDH I;  1UZH C;  4F0K B;  1UWA C;  1RCX C;  1IR1 S;  1RCO C;  1BWV S;  2YBV B; 
#chains in the Genus database with same CATH topology
 3TG8 A;  3AXM S;  4F9T A;  8RUC I;  1UPP I;  2V67 I;  3UMY A;  2FHZ A;  1SVD M;  3RUB S;  1RXO C;  1RLC S;  1AUS S;  3FPN A;  1DWU A;  1AA1 C;  2V63 I;  4LQ4 A;  1RSC I;  1CJS A;  3U56 A;  3QOY A;  4QG3 A;  1EJ7 S;  5DM6 0;  4REO A;  4F0M B;  1I2A A;  1ZHO A;  2V6A I;  4F0H B;  1GK8 I;  1RBL I;  4RUB S;  1RLD S;  3AXK S;  2VDI I;  1U63 A;  3ZQJ A;  1IR2 1;  4MKV S;  1IWA B;  2V68 I;  2DFX I;  4QVI A;  2V69 I;  1RBO C;  1UW9 C;  1UPM C;  1BXN I;  1UZD C;  1WDD S;  4HHH S;  3ZXW B;  2VDH I;  1UZH C;  4QGB A;  4F0K B;  1UWA C;  1MZP A;  1RCX C;  1IR1 S;  3U4M A;  1RCO C;  2HW8 A;  1BWV S;  2YBV B;  4DFC B;  1AD2 A;  5DM7 0; 
#chains in the Genus database with same CATH homology
 3AXM S;  8RUC I;  1UPP I;  2V67 I;  1SVD M;  3RUB S;  1RXO C;  1RLC S;  1AUS S;  1AA1 C;  2V63 I;  1RSC I;  1EJ7 S;  4F0M B;  2V6A I;  4F0H B;  1GK8 I;  1RBL I;  4RUB S;  1RLD S;  3AXK S;  2VDI I;  1IR2 1;  4MKV S;  1IWA B;  2V68 I;  2V69 I;  1RBO C;  1UW9 C;  1UPM C;  1BXN I;  1UZD C;  1WDD S;  4HHH S;  3ZXW B;  2VDH I;  1UZH C;  4F0K B;  1UWA C;  1RCX C;  1IR1 S;  1RCO C;  1BWV S;  2YBV B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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