2VHIA

Crystal structure of a pyrimidine degrading enzyme from drosophila melanogaster
Total Genus 113
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
113
sequence length
382
structure length
348
Chain Sequence
ELKNLNDCLEKHLPPDELKEVKRILYGVEEDQTLELPTSAKDIAEQNGFDIKGYRFTAREEQTRKRRIVRVGAIQNSIVIPTTAPIEKQREAIWNKVKTMIKAAAEAGCNIVCTQEAWTMPFACEFAEEAENGPTTKMLAELAKAYNMVIIHSILERDMEHGETIWNTAVVISNSGRYLGKHRKNHIPYMEGNTGHPVFETEFGKLAVNICYGRHHPQNWMMFGLNGAEIVFNPSATIGRLSEPLWSIEARNAAIANSYFTVPINRVGTEQFPGPFYGSSYVAAPDGSRTPSLSRDKDGLLVVELDLNLCRQVKDFWGFRMTQRVPLYAESFKKASEHGFKPQIIKET
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Hydrolase
molecule keywords CG3027-PA
publication title The Crystal Structure of Beta-Alanine Synthase from Drosophila Melanogaster Reveals a Homooctameric Helical Turn-Like Assembly.
pubmed doi rcsb
source organism Drosophila melanogaster
total genus 113
structure length 348
sequence length 382
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature ec 3.5.1.6: Beta-ureidopropionase.
pdb deposition date 2007-11-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00795 CN_hydrolase Carbon-nitrogen hydrolase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.110.10 Alpha Beta 4-Layer Sandwich Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase Carbon-nitrogen hydrolase 2vhiA00
4H5UA 4HG3A 3IW3A 3KLCA 4LF0A 4HGDA 1FO6A 2E11A 3DLAA 3KI8A 4IZWA 4IZTA 2DYVA 5JQNA 3SEQA 2VHIA 3HKXA 5H8JA 1UF7A 4GYLA 2GGLA 2UXYA 3SYTA 2W1VA 4IZVA 2E2KA 3IVZA 1UF5A 1F89A 3N05A 4GYNA 4IZSA 4IZUA 5KHAA 3SEZA 3P8KA 5H8KA 2GGKA 4CYGA 5H8IA 2DYUA 2E2LA 2VHHA 4F4HA 1ERZA 3SZGA 4CYFA 5H8LA 4CYYA 3WUYA 4KZFA 1UF8A 1EMSA 4HG5A 3SDBA 3ILVA 2PLQA 1UF4A 1J31A
chains in the Genus database with same CATH superfamily
4H5UA 4HG3A 3IW3A 3KLCA 4LF0A 4HGDA 1FO6A 2E11A 3DLAA 3KI8A 4IZWA 4IZTA 2DYVA 5JQNA 3SEQA 2VHIA 3HKXA 5H8JA 1UF7A 4GYLA 2GGLA 2UXYA 3SYTA 2W1VA 4IZVA 2E2KA 3IVZA 1UF5A 1F89A 3N05A 4GYNA 4IZSA 4IZUA 5KHAA 3SEZA 3P8KA 5H8KA 2GGKA 4CYGA 5H8IA 2DYUA 2E2LA 2VHHA 4F4HA 1ERZA 3SZGA 4CYFA 5H8LA 4CYYA 3WUYA 4KZFA 1UF8A 1EMSA 4HG5A 3SDBA 3ILVA 2PLQA 1UF4A 1J31A
chains in the Genus database with same CATH topology
4H5UA 4HG3A 3IW3A 3KLCA 4LF0A 4HGDA 1FO6A 2E11A 3DLAA 3KI8A 4IZWA 4IZTA 2DYVA 5JQNA 3SEQA 2VHIA 3HKXA 5H8JA 1UF7A 4GYLA 2GGLA 2UXYA 3SYTA 2W1VA 4IZVA 2E2KA 3IVZA 1UF5A 1F89A 3N05A 4GYNA 4IZSA 4IZUA 5KHAA 3SEZA 3P8KA 5H8KA 2GGKA 4CYGA 5H8IA 2DYUA 2E2LA 2VHHA 4F4HA 1ERZA 3SZGA 4CYFA 5H8LA 4CYYA 3WUYA 4KZFA 1UF8A 1EMSA 4HG5A 3SDBA 3ILVA 2PLQA 1UF4A 1J31A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4H5U A;  4HG3 A;  3IW3 A;  3KLC A;  4LF0 A;  4HGD A;  1FO6 A;  2E11 A;  3DLA A;  3KI8 A;  4IZW A;  4IZT A;  2DYV A;  5JQN A;  3SEQ A;  2VHI A;  3HKX A;  5H8J A;  1UF7 A;  4GYL A;  2GGL A;  2UXY A;  3SYT A;  2W1V A;  4IZV A;  2E2K A;  3IVZ A;  1UF5 A;  1F89 A;  3N05 A;  4GYN A;  4IZS A;  4IZU A;  5KHA A;  3SEZ A;  3P8K A;  5H8K A;  2GGK A;  4CYG A;  5H8I A;  2DYU A;  2E2L A;  2VHH A;  4F4H A;  1ERZ A;  3SZG A;  4CYF A;  5H8L A;  4CYY A;  3WUY A;  4KZF A;  1UF8 A;  1EMS A;  4HG5 A;  3SDB A;  3ILV A;  2PLQ A;  1UF4 A;  1J31 A; 
#chains in the Genus database with same CATH topology
 4H5U A;  4HG3 A;  3IW3 A;  3KLC A;  4LF0 A;  4HGD A;  1FO6 A;  2E11 A;  3DLA A;  3KI8 A;  4IZW A;  4IZT A;  2DYV A;  5JQN A;  3SEQ A;  2VHI A;  3HKX A;  5H8J A;  1UF7 A;  4GYL A;  2GGL A;  2UXY A;  3SYT A;  2W1V A;  4IZV A;  2E2K A;  3IVZ A;  1UF5 A;  1F89 A;  3N05 A;  4GYN A;  4IZS A;  4IZU A;  5KHA A;  3SEZ A;  3P8K A;  5H8K A;  2GGK A;  4CYG A;  5H8I A;  2DYU A;  2E2L A;  2VHH A;  4F4H A;  1ERZ A;  3SZG A;  4CYF A;  5H8L A;  4CYY A;  3WUY A;  4KZF A;  1UF8 A;  1EMS A;  4HG5 A;  3SDB A;  3ILV A;  2PLQ A;  1UF4 A;  1J31 A; 
#chains in the Genus database with same CATH homology
 4H5U A;  4HG3 A;  3IW3 A;  3KLC A;  4LF0 A;  4HGD A;  1FO6 A;  2E11 A;  3DLA A;  3KI8 A;  4IZW A;  4IZT A;  2DYV A;  5JQN A;  3SEQ A;  2VHI A;  3HKX A;  5H8J A;  1UF7 A;  4GYL A;  2GGL A;  2UXY A;  3SYT A;  2W1V A;  4IZV A;  2E2K A;  3IVZ A;  1UF5 A;  1F89 A;  3N05 A;  4GYN A;  4IZS A;  4IZU A;  5KHA A;  3SEZ A;  3P8K A;  5H8K A;  2GGK A;  4CYG A;  5H8I A;  2DYU A;  2E2L A;  2VHH A;  4F4H A;  1ERZ A;  3SZG A;  4CYF A;  5H8L A;  4CYY A;  3WUY A;  4KZF A;  1UF8 A;  1EMS A;  4HG5 A;  3SDB A;  3ILV A;  2PLQ A;  1UF4 A;  1J31 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...