2W5QA

Structure-based mechanism of lipoteichoic acid synthesis by staphylococcus aureus ltas.
Total Genus 167
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
167
Knots found
sequence length
424
structure length
424
Chain Sequence
SEDDLTKVLNYTKQRQTEPNPEYYGVAKKKNIIKIHLESFQTFLINKKVNGKEVTPFLNKLSSGKEQFTYFPNFFHQTGQGKTSDSEFTMDNSLYGLPQGSAFSLKGDNTYQSLPAILDQKQGYKSDVMHGDYKTFWNRDQVYKHFGIDKFYDATYYDMSDKNVVNLGLKDKIFFKDSANYQAKMKSPFYSHLITLTNHYPFTLDEKDATIEKSNTGDATVDGYIQTARYLDEALEEYINDLKKKGLYDNSVIMIYGDHYGISENHNNAMEKLLGEKITPAKFTDLNRTGFWIKIPGKSGGINNEYAGQVDVMPTILHLAGIDTKNYLMFGTDLFSKGHNQVVPFRNGDFITKDYKYVNGKIYSNKNNELITTQPADFEKNKKQVEKDLEMSDNVLNGDLFRFYKNPDFKKVNPSKYKYETGPK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords PROCESSED GLYCEROL PHOSPHATE LIPOTEICHOIC ACID SYNTHASE
publication title Structure-Based Mechanism of Lipoteichoic Acid Synthesis by Staphylococcus Aureus Ltas.
pubmed doi rcsb
source organism Staphylococcus aureus
total genus 167
structure length 424
sequence length 424
other databases KnotProt 2.0: S +31
ec nomenclature
pdb deposition date 2008-12-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00884 Sulfatase Sulfatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 2w5qA02
3TG0A 2W5VA 5IJSA 1O98A 3M8WA 1KHJA 4MY4A 1ALHA 2GLQA 1SHQA 5IJQA 3NKQA 3UO0A 3TWZA 3DYCA 4B56A 5LIAA 3SZZA 5L0KA 5LRMA 3OT9A 1KH7A 5KXAA 1URAA 1O99A 4YR1A 4GTYA 2W5SA 3NKNA 2W5RA 2IUCB 5LQQA 5K4PA 3WAVA 2W8SA 4LR9A 4KM4A 2IUCA 5INHA 3NKOA 4ZG6A 1AJCA 4LQYA 1ANIA 1K7HA 1ANJA 4LRDA 4LR8A 3BDHA 1KHLA 1AJAA 5L0EA 1ED9A 1N2KA 4UORA 1AJDA 1FSUA 2D1GA 3Q3QA 2RH6A 3UN5A 4ZGAA 4LRFA 3BDGB 2IFYA 3MK0A 5DLWA 5EGHA 2VQRA 1KH5A 3IDDA 1ALKA 3IGZB 1EW9A 5AJ9A 5L0BA 4NWJA 4LRBA 1ELYA 1N2LA 1URBA 4MIVA 3NKPA 3NKMA 4KAVA 1E33P 3LXQA 4FDJA 2XR9A 4ZG9A 3MK2A 1HDHA 4CXSA 3B5QA 3MK1A 1KHKA 1ZEFA 1KH9A 2GSUA 1Y6VA 4ZG7A 3IGYB 2QZUA 4GTXA 1ELXA 2GA3A 5DLVA 3KD8A 3M8YA 1EJJA 3M8ZA 2W5TA 4FDIA 4UOPA 5LRNA 2XRGA 4LRAA 3BDGA 4QAXA 3T02A 1EW2A 2G9YA 2GSNA 3WAYA 3WBHA 4NWXA 3ED4A 1EI6A 4LR7A 4UPKA 1EW8A 4GTZA 4KJDA 2W5XA 1AUKA 5C66A 3WAWA 3A52A 3NKRA 4KAYA 1HJKA 4CYRA 3TX0A 1E1ZP 3DPCA 1ZEBA 1ALIA 5GOVA 4LREA 4MHXA 4CXUA 5TJ3A 3NVLA 2ANHA 1E2SP 5HRTA 4KJGA 1AJBA 1KH4A 3CMRA 2GSOA 4LR2A 3T00A 3UN3A 4CXKA 4GTWA 1ED8A 1ALJA 4UPIA 3T01A 1Y7AA 4N7TA 3UN2A 4UPHA 1KHNA 3M7VA 5DLTA 2W5WA 2W8DA 3E2DA 4CYSA 4UOOA 3SZYA 4TN0A 1SHNA 1P49A 1HQAA 1B8JA 4LRCA 3WAXA 3UNYA 2W5QA 4UPLA 1ELZA 1ZEDA 5GRRA 1EQJA 5EGEA 1E3CP 3BDFA 2X98A 2ZKTA
chains in the Genus database with same CATH superfamily
3TG0A 2W5VA 5IJSA 1O98A 3M8WA 1KHJA 4MY4A 1ALHA 2GLQA 1SHQA 5IJQA 3NKQA 3UO0A 3TWZA 3DYCA 4B56A 5LIAA 3SZZA 5L0KA 5LRMA 3OT9A 1KH7A 5KXAA 1URAA 1O99A 4YR1A 4GTYA 2W5SA 3NKNA 2W5RA 2IUCB 5LQQA 5K4PA 3WAVA 2W8SA 4LR9A 4KM4A 2IUCA 5INHA 3NKOA 4ZG6A 1AJCA 4LQYA 1ANIA 1K7HA 1ANJA 4LRDA 4LR8A 3BDHA 1KHLA 1AJAA 5L0EA 1ED9A 1N2KA 4UORA 1AJDA 1FSUA 2D1GA 3Q3QA 2RH6A 3UN5A 4ZGAA 4LRFA 3BDGB 2IFYA 3MK0A 5DLWA 5EGHA 2VQRA 1KH5A 3IDDA 1ALKA 3IGZB 1EW9A 5AJ9A 5L0BA 4NWJA 4LRBA 1ELYA 1N2LA 1URBA 4MIVA 3NKPA 3NKMA 4KAVA 1E33P 3LXQA 4FDJA 2XR9A 4ZG9A 3MK2A 1HDHA 4CXSA 3B5QA 3MK1A 1KHKA 1ZEFA 1KH9A 2GSUA 1Y6VA 4ZG7A 3IGYB 2QZUA 4GTXA 1ELXA 2GA3A 5DLVA 3KD8A 3M8YA 1EJJA 3M8ZA 2W5TA 4FDIA 4UOPA 5LRNA 2XRGA 4LRAA 3BDGA 4QAXA 3T02A 1EW2A 2G9YA 2GSNA 3WAYA 3WBHA 4NWXA 3ED4A 1EI6A 4LR7A 4UPKA 1EW8A 4GTZA 4KJDA 2W5XA 1AUKA 5C66A 3WAWA 3A52A 3NKRA 4KAYA 1HJKA 4CYRA 3TX0A 1E1ZP 3DPCA 1ZEBA 1ALIA 5GOVA 4LREA 4MHXA 4CXUA 5TJ3A 3NVLA 2ANHA 1E2SP 5HRTA 4KJGA 1AJBA 1KH4A 3CMRA 2GSOA 4LR2A 3T00A 3UN3A 4CXKA 4GTWA 1ED8A 1ALJA 4UPIA 3T01A 1Y7AA 4N7TA 3UN2A 4UPHA 1KHNA 3M7VA 5DLTA 2W5WA 2W8DA 3E2DA 4CYSA 4UOOA 3SZYA 4TN0A 1SHNA 1P49A 1HQAA 1B8JA 4LRCA 3WAXA 3UNYA 2W5QA 4UPLA 1ELZA 1ZEDA 5GRRA 1EQJA 5EGEA 1E3CP 3BDFA 2X98A 2ZKTA
chains in the Genus database with same CATH topology
3TG0A 2W5VA 5IJSA 1O98A 3M8WA 1KHJA 4MY4A 1ALHA 2GLQA 1SHQA 5IJQA 3NKQA 3UO0A 3TWZA 3DYCA 4B56A 5LIAA 3SZZA 5L0KA 5LRMA 3OT9A 1KH7A 5KXAA 1URAA 1O99A 4YR1A 4GTYA 2W5SA 3NKNA 2W5RA 2IUCB 5LQQA 5K4PA 3WAVA 2W8SA 4LR9A 4KM4A 2IUCA 5INHA 3NKOA 4ZG6A 1AJCA 4LQYA 1ANIA 1K7HA 1ANJA 4LRDA 4LR8A 3BDHA 1KHLA 1AJAA 5L0EA 1ED9A 1N2KA 4UORA 1AJDA 1FSUA 2D1GA 3Q3QA 2RH6A 3UN5A 4ZGAA 4LRFA 3BDGB 2IFYA 3MK0A 5DLWA 5EGHA 2VQRA 1KH5A 3IDDA 1ALKA 3IGZB 1EW9A 5AJ9A 5L0BA 4NWJA 4LRBA 1ELYA 1N2LA 1URBA 4MIVA 3NKPA 3NKMA 4KAVA 1E33P 3LXQA 4FDJA 2XR9A 4ZG9A 3MK2A 1HDHA 4CXSA 3B5QA 3MK1A 1KHKA 1ZEFA 1KH9A 2GSUA 1Y6VA 4ZG7A 3IGYB 2QZUA 4GTXA 1ELXA 2GA3A 5DLVA 3KD8A 3M8YA 1EJJA 3M8ZA 2W5TA 4FDIA 4UOPA 5LRNA 2XRGA 4LRAA 3BDGA 4QAXA 3T02A 1EW2A 2G9YA 2GSNA 3WAYA 3WBHA 4NWXA 3ED4A 1EI6A 4LR7A 4UPKA 1EW8A 4GTZA 4KJDA 2W5XA 1AUKA 5C66A 3WAWA 3A52A 3NKRA 4KAYA 1HJKA 4CYRA 3TX0A 1E1ZP 3DPCA 1ZEBA 1ALIA 5GOVA 4LREA 4MHXA 4CXUA 5TJ3A 3NVLA 2ANHA 1E2SP 5HRTA 4KJGA 1AJBA 1KH4A 3CMRA 2GSOA 4LR2A 3T00A 3UN3A 4CXKA 4GTWA 1ED8A 1ALJA 4UPIA 3T01A 1Y7AA 4N7TA 3UN2A 4UPHA 1KHNA 3M7VA 5DLTA 2W5WA 2W8DA 3E2DA 4CYSA 4UOOA 3SZYA 4TN0A 1SHNA 1P49A 1HQAA 1B8JA 4LRCA 3WAXA 3UNYA 2W5QA 4UPLA 1ELZA 1ZEDA 5GRRA 1EQJA 5EGEA 1E3CP 3BDFA 2X98A 2ZKTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TG0 A;  2W5V A;  5IJS A;  1O98 A;  3M8W A;  1KHJ A;  4MY4 A;  1ALH A;  2GLQ A;  1SHQ A;  5IJQ A;  3NKQ A;  3UO0 A;  3TWZ A;  3DYC A;  4B56 A;  5LIA A;  3SZZ A;  5L0K A;  5LRM A;  3OT9 A;  1KH7 A;  5KXA A;  1URA A;  1O99 A;  4YR1 A;  4GTY A;  2W5S A;  3NKN A;  2W5R A;  2IUC B;  5LQQ A;  5K4P A;  3WAV A;  2W8S A;  4LR9 A;  4KM4 A;  2IUC A;  5INH A;  3NKO A;  4ZG6 A;  1AJC A;  4LQY A;  1ANI A;  1K7H A;  1ANJ A;  4LRD A;  4LR8 A;  3BDH A;  1KHL A;  1AJA A;  5L0E A;  1ED9 A;  1N2K A;  4UOR A;  1AJD A;  1FSU A;  2D1G A;  3Q3Q A;  2RH6 A;  3UN5 A;  4ZGA A;  4LRF A;  3BDG B;  2IFY A;  3MK0 A;  5DLW A;  5EGH A;  2VQR A;  1KH5 A;  3IDD A;  1ALK A;  3IGZ B;  1EW9 A;  5AJ9 A;  5L0B A;  4NWJ A;  4LRB A;  1ELY A;  1N2L A;  1URB A;  4MIV A;  3NKP A;  3NKM A;  4KAV A;  1E33 P;  3LXQ A;  4FDJ A;  2XR9 A;  4ZG9 A;  3MK2 A;  1HDH A;  4CXS A;  3B5Q A;  3MK1 A;  1KHK A;  1ZEF A;  1KH9 A;  2GSU A;  1Y6V A;  4ZG7 A;  3IGY B;  2QZU A;  4GTX A;  1ELX A;  2GA3 A;  5DLV A;  3KD8 A;  3M8Y A;  1EJJ A;  3M8Z A;  2W5T A;  4FDI A;  4UOP A;  5LRN A;  2XRG A;  4LRA A;  3BDG A;  4QAX A;  3T02 A;  1EW2 A;  2G9Y A;  2GSN A;  3WAY A;  3WBH A;  4NWX A;  3ED4 A;  1EI6 A;  4LR7 A;  4UPK A;  1EW8 A;  4GTZ A;  4KJD A;  2W5X A;  1AUK A;  5C66 A;  3WAW A;  3A52 A;  3NKR A;  4KAY A;  1HJK A;  4CYR A;  3TX0 A;  1E1Z P;  3DPC A;  1ZEB A;  1ALI A;  5GOV A;  4LRE A;  4MHX A;  4CXU A;  5TJ3 A;  3NVL A;  2ANH A;  1E2S P;  5HRT A;  4KJG A;  1AJB A;  1KH4 A;  3CMR A;  2GSO A;  4LR2 A;  3T00 A;  3UN3 A;  4CXK A;  4GTW A;  1ED8 A;  1ALJ A;  4UPI A;  3T01 A;  1Y7A A;  4N7T A;  3UN2 A;  4UPH A;  1KHN A;  3M7V A;  5DLT A;  2W5W A;  2W8D A;  3E2D A;  4CYS A;  4UOO A;  3SZY A;  4TN0 A;  1SHN A;  1P49 A;  1HQA A;  1B8J A;  4LRC A;  3WAX A;  3UNY A;  2W5Q A;  4UPL A;  1ELZ A;  1ZED A;  5GRR A;  1EQJ A;  5EGE A;  1E3C P;  3BDF A;  2X98 A;  2ZKT A; 
#chains in the Genus database with same CATH topology
 3TG0 A;  2W5V A;  5IJS A;  1O98 A;  3M8W A;  1KHJ A;  4MY4 A;  1ALH A;  2GLQ A;  1SHQ A;  5IJQ A;  3NKQ A;  3UO0 A;  3TWZ A;  3DYC A;  4B56 A;  5LIA A;  3SZZ A;  5L0K A;  5LRM A;  3OT9 A;  1KH7 A;  5KXA A;  1URA A;  1O99 A;  4YR1 A;  4GTY A;  2W5S A;  3NKN A;  2W5R A;  2IUC B;  5LQQ A;  5K4P A;  3WAV A;  2W8S A;  4LR9 A;  4KM4 A;  2IUC A;  5INH A;  3NKO A;  4ZG6 A;  1AJC A;  4LQY A;  1ANI A;  1K7H A;  1ANJ A;  4LRD A;  4LR8 A;  3BDH A;  1KHL A;  1AJA A;  5L0E A;  1ED9 A;  1N2K A;  4UOR A;  1AJD A;  1FSU A;  2D1G A;  3Q3Q A;  2RH6 A;  3UN5 A;  4ZGA A;  4LRF A;  3BDG B;  2IFY A;  3MK0 A;  5DLW A;  5EGH A;  2VQR A;  1KH5 A;  3IDD A;  1ALK A;  3IGZ B;  1EW9 A;  5AJ9 A;  5L0B A;  4NWJ A;  4LRB A;  1ELY A;  1N2L A;  1URB A;  4MIV A;  3NKP A;  3NKM A;  4KAV A;  1E33 P;  3LXQ A;  4FDJ A;  2XR9 A;  4ZG9 A;  3MK2 A;  1HDH A;  4CXS A;  3B5Q A;  3MK1 A;  1KHK A;  1ZEF A;  1KH9 A;  2GSU A;  1Y6V A;  4ZG7 A;  3IGY B;  2QZU A;  4GTX A;  1ELX A;  2GA3 A;  5DLV A;  3KD8 A;  3M8Y A;  1EJJ A;  3M8Z A;  2W5T A;  4FDI A;  4UOP A;  5LRN A;  2XRG A;  4LRA A;  3BDG A;  4QAX A;  3T02 A;  1EW2 A;  2G9Y A;  2GSN A;  3WAY A;  3WBH A;  4NWX A;  3ED4 A;  1EI6 A;  4LR7 A;  4UPK A;  1EW8 A;  4GTZ A;  4KJD A;  2W5X A;  1AUK A;  5C66 A;  3WAW A;  3A52 A;  3NKR A;  4KAY A;  1HJK A;  4CYR A;  3TX0 A;  1E1Z P;  3DPC A;  1ZEB A;  1ALI A;  5GOV A;  4LRE A;  4MHX A;  4CXU A;  5TJ3 A;  3NVL A;  2ANH A;  1E2S P;  5HRT A;  4KJG A;  1AJB A;  1KH4 A;  3CMR A;  2GSO A;  4LR2 A;  3T00 A;  3UN3 A;  4CXK A;  4GTW A;  1ED8 A;  1ALJ A;  4UPI A;  3T01 A;  1Y7A A;  4N7T A;  3UN2 A;  4UPH A;  1KHN A;  3M7V A;  5DLT A;  2W5W A;  2W8D A;  3E2D A;  4CYS A;  4UOO A;  3SZY A;  4TN0 A;  1SHN A;  1P49 A;  1HQA A;  1B8J A;  4LRC A;  3WAX A;  3UNY A;  2W5Q A;  4UPL A;  1ELZ A;  1ZED A;  5GRR A;  1EQJ A;  5EGE A;  1E3C P;  3BDF A;  2X98 A;  2ZKT A; 
#chains in the Genus database with same CATH homology
 3TG0 A;  2W5V A;  5IJS A;  1O98 A;  3M8W A;  1KHJ A;  4MY4 A;  1ALH A;  2GLQ A;  1SHQ A;  5IJQ A;  3NKQ A;  3UO0 A;  3TWZ A;  3DYC A;  4B56 A;  5LIA A;  3SZZ A;  5L0K A;  5LRM A;  3OT9 A;  1KH7 A;  5KXA A;  1URA A;  1O99 A;  4YR1 A;  4GTY A;  2W5S A;  3NKN A;  2W5R A;  2IUC B;  5LQQ A;  5K4P A;  3WAV A;  2W8S A;  4LR9 A;  4KM4 A;  2IUC A;  5INH A;  3NKO A;  4ZG6 A;  1AJC A;  4LQY A;  1ANI A;  1K7H A;  1ANJ A;  4LRD A;  4LR8 A;  3BDH A;  1KHL A;  1AJA A;  5L0E A;  1ED9 A;  1N2K A;  4UOR A;  1AJD A;  1FSU A;  2D1G A;  3Q3Q A;  2RH6 A;  3UN5 A;  4ZGA A;  4LRF A;  3BDG B;  2IFY A;  3MK0 A;  5DLW A;  5EGH A;  2VQR A;  1KH5 A;  3IDD A;  1ALK A;  3IGZ B;  1EW9 A;  5AJ9 A;  5L0B A;  4NWJ A;  4LRB A;  1ELY A;  1N2L A;  1URB A;  4MIV A;  3NKP A;  3NKM A;  4KAV A;  1E33 P;  3LXQ A;  4FDJ A;  2XR9 A;  4ZG9 A;  3MK2 A;  1HDH A;  4CXS A;  3B5Q A;  3MK1 A;  1KHK A;  1ZEF A;  1KH9 A;  2GSU A;  1Y6V A;  4ZG7 A;  3IGY B;  2QZU A;  4GTX A;  1ELX A;  2GA3 A;  5DLV A;  3KD8 A;  3M8Y A;  1EJJ A;  3M8Z A;  2W5T A;  4FDI A;  4UOP A;  5LRN A;  2XRG A;  4LRA A;  3BDG A;  4QAX A;  3T02 A;  1EW2 A;  2G9Y A;  2GSN A;  3WAY A;  3WBH A;  4NWX A;  3ED4 A;  1EI6 A;  4LR7 A;  4UPK A;  1EW8 A;  4GTZ A;  4KJD A;  2W5X A;  1AUK A;  5C66 A;  3WAW A;  3A52 A;  3NKR A;  4KAY A;  1HJK A;  4CYR A;  3TX0 A;  1E1Z P;  3DPC A;  1ZEB A;  1ALI A;  5GOV A;  4LRE A;  4MHX A;  4CXU A;  5TJ3 A;  3NVL A;  2ANH A;  1E2S P;  5HRT A;  4KJG A;  1AJB A;  1KH4 A;  3CMR A;  2GSO A;  4LR2 A;  3T00 A;  3UN3 A;  4CXK A;  4GTW A;  1ED8 A;  1ALJ A;  4UPI A;  3T01 A;  1Y7A A;  4N7T A;  3UN2 A;  4UPH A;  1KHN A;  3M7V A;  5DLT A;  2W5W A;  2W8D A;  3E2D A;  4CYS A;  4UOO A;  3SZY A;  4TN0 A;  1SHN A;  1P49 A;  1HQA A;  1B8J A;  4LRC A;  3WAX A;  3UNY A;  2W5Q A;  4UPL A;  1ELZ A;  1ZED A;  5GRR A;  1EQJ A;  5EGE A;  1E3C P;  3BDF A;  2X98 A;  2ZKT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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