2W5VA

Structure of tab5 alkaline phosphatase mutant his 135 asp with mg bound in the m3 site.
Total Genus 128
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
128
Knots found
sequence length
346
structure length
345
Chain Sequence
QLKTPKNVILLISDGAGLSQISSTFYFKSGTPNYTQFKNIGLIKTSSSREDVTDASGATAFSCGIKTYNAAIGVADDSTAVKSIVEIAALNNIKTGVVATSSITDATPASFYAHALNRGLEEEIAMDMTESDLDFFAGGGLNYFTKRKDKKDVLAILKGNQFTINTTALTDFSSIASNRKMGFLLADEAMPTMEKGRGNFLSAATDLAIQFLSKDNSAFFIMSEGSQIDWGGHANNASYLISEINDFDDAIGTALAFAKKDGNTLVIVTSDHETGGFTLAAKKNKREDGSEYSDYTEIGPTFSTGGHSATLIPVFAYGPGSEEFIGIYENNEIFHKILKVTKWNQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords ALKALINE PHOSPHATASE
publication title Coordination Sphere of the Third Metal Site is Essential to the Activity and Metal Selectivity of Alkaline Phosphatases.
pubmed doi rcsb
source organism Antarctic bacterium tab5
total genus 128
structure length 345
sequence length 346
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 2008-12-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 2w5vA00
1URBA 4LRFA 2W8SA 1KHNA 4KAVA 1HDHA 1ELZA 4FDJA 1KH7A 2D1GA 2W5SA 4LRDA 1EQJA 1K7HA 1ALHA 4ZGAA 4LR7A 1N2LA 1O99A 1ZEBA 3CMRA 1B8JA 3NKMA 1ELXA 3UO0A 3M7VA 3MK0A 3NKPA 3UN2A 3TG0A 3SZYA 2IUCB 4ZG7A 4NWJA 5C66A 4LREA 5KXAA 1ZEDA 4MY4A 5AJ9A 4KM4A 2X98A 4CXSA 4TN0A 1EW8A 1URAA 1O98A 5INHA 4UPIA 1ZEFA 4CYSA 3NKRA 1EI6A 1SHQA 4GTZA 1ALJA 2W5TA 2GLQA 5L0EA 1N2KA 4UOOA 2W8DA 1KH9A 1ED9A 3ED4A 1KHLA 3A52A 3WAYA 4NWXA 1AJAA 4KJGA 3UN3A 3M8YA 3TX0A 4ZG9A 2GSOA 2GA3A 1AJBA 4CXKA 3IGZB 1KHJA 3BDFA 4CYRA 2ANHA 2W5XA 3DYCA 4MIVA 4CXUA 3OT9A 4LR2A 3SZZA 1ANIA 1KH4A 3NKQA 1KHKA 3B5QA 5HRTA 2XRGA 4UPHA 1E3CP 4QAXA 3T02A 2ZKTA 3T01A 5DLTA 1EW9A 5GRRA 2RH6A 3DPCA 5EGHA 4YR1A 2GSUA 4LR9A 2W5RA 4FDIA 4LRAA 3BDHA 3WAXA 3MK1A 3IDDA 4N7TA 5DLWA 4KAYA 1E1ZP 3UNYA 3NKOA 5K4PA 4ZG6A 2QZUA 1Y6VA 4B56A 1ANJA 4GTWA 3MK2A 3WBHA 3IGYB 1AJDA 4LRBA 4LQYA 2W5QA 4UOPA 5IJSA 5LQQA 1HJKA 5LIAA 5LRMA 3M8ZA 2GSNA 3Q3QA 3UN5A 3M8WA 4UPKA 3WAWA 3WAVA 1HQAA 3NKNA 1EW2A 4KJDA 5IJQA 2G9YA 5DLVA 1Y7AA 5EGEA 3BDGA 3T00A 5L0BA 5LRNA 5L0KA 1AJCA 4LRCA 3TWZA 1ED8A 1P49A 1FSUA 2IUCA 4UORA 1AUKA 1SHNA 3BDGB 1E33P 1ELYA 4LR8A 4GTYA 1EJJA 2W5WA 1KH5A 2XR9A 1ALKA 4MHXA 1ALIA 2W5VA 5GOVA 3LXQA 3KD8A 2VQRA 1E2SP 2IFYA 4GTXA 3E2DA 5TJ3A 3NVLA 4UPLA
chains in the Genus database with same CATH superfamily
1URBA 4LRFA 2W8SA 1KHNA 4KAVA 1HDHA 1ELZA 4FDJA 1KH7A 2D1GA 2W5SA 4LRDA 1EQJA 1K7HA 1ALHA 4ZGAA 4LR7A 1N2LA 1O99A 1ZEBA 3CMRA 1B8JA 3NKMA 1ELXA 3UO0A 3M7VA 3MK0A 3NKPA 3UN2A 3TG0A 3SZYA 2IUCB 4ZG7A 4NWJA 5C66A 4LREA 5KXAA 1ZEDA 4MY4A 5AJ9A 4KM4A 2X98A 4CXSA 4TN0A 1EW8A 1URAA 1O98A 5INHA 4UPIA 1ZEFA 4CYSA 3NKRA 1EI6A 1SHQA 4GTZA 1ALJA 2W5TA 2GLQA 5L0EA 1N2KA 4UOOA 2W8DA 1KH9A 1ED9A 3ED4A 1KHLA 3A52A 3WAYA 4NWXA 1AJAA 4KJGA 3UN3A 3M8YA 3TX0A 4ZG9A 2GSOA 2GA3A 1AJBA 4CXKA 3IGZB 1KHJA 3BDFA 4CYRA 2ANHA 2W5XA 3DYCA 4MIVA 4CXUA 3OT9A 4LR2A 3SZZA 1ANIA 1KH4A 3NKQA 1KHKA 3B5QA 5HRTA 2XRGA 4UPHA 1E3CP 4QAXA 3T02A 2ZKTA 3T01A 5DLTA 1EW9A 5GRRA 2RH6A 3DPCA 5EGHA 4YR1A 2GSUA 4LR9A 2W5RA 4FDIA 4LRAA 3BDHA 3WAXA 3MK1A 3IDDA 4N7TA 5DLWA 4KAYA 1E1ZP 3UNYA 3NKOA 5K4PA 4ZG6A 2QZUA 1Y6VA 4B56A 1ANJA 4GTWA 3MK2A 3WBHA 3IGYB 1AJDA 4LRBA 4LQYA 2W5QA 4UOPA 5IJSA 5LQQA 1HJKA 5LIAA 5LRMA 3M8ZA 2GSNA 3Q3QA 3UN5A 3M8WA 4UPKA 3WAWA 3WAVA 1HQAA 3NKNA 1EW2A 4KJDA 5IJQA 2G9YA 5DLVA 1Y7AA 5EGEA 3BDGA 3T00A 5L0BA 5LRNA 5L0KA 1AJCA 4LRCA 3TWZA 1ED8A 1P49A 1FSUA 2IUCA 4UORA 1AUKA 1SHNA 3BDGB 1E33P 1ELYA 4LR8A 4GTYA 1EJJA 2W5WA 1KH5A 2XR9A 1ALKA 4MHXA 1ALIA 2W5VA 5GOVA 3LXQA 3KD8A 2VQRA 1E2SP 2IFYA 4GTXA 3E2DA 5TJ3A 3NVLA 4UPLA
chains in the Genus database with same CATH topology
1URBA 4LRFA 2W8SA 1KHNA 4KAVA 1HDHA 1ELZA 4FDJA 1KH7A 2D1GA 2W5SA 4LRDA 1EQJA 1K7HA 1ALHA 4ZGAA 4LR7A 1N2LA 1O99A 1ZEBA 3CMRA 1B8JA 3NKMA 1ELXA 3UO0A 3M7VA 3MK0A 3NKPA 3UN2A 3TG0A 3SZYA 2IUCB 4ZG7A 4NWJA 5C66A 4LREA 5KXAA 1ZEDA 4MY4A 5AJ9A 4KM4A 2X98A 4CXSA 4TN0A 1EW8A 1URAA 1O98A 5INHA 4UPIA 1ZEFA 4CYSA 3NKRA 1EI6A 1SHQA 4GTZA 1ALJA 2W5TA 2GLQA 5L0EA 1N2KA 4UOOA 2W8DA 1KH9A 1ED9A 3ED4A 1KHLA 3A52A 3WAYA 4NWXA 1AJAA 4KJGA 3UN3A 3M8YA 3TX0A 4ZG9A 2GSOA 2GA3A 1AJBA 4CXKA 3IGZB 1KHJA 3BDFA 4CYRA 2ANHA 2W5XA 3DYCA 4MIVA 4CXUA 3OT9A 4LR2A 3SZZA 1ANIA 1KH4A 3NKQA 1KHKA 3B5QA 5HRTA 2XRGA 4UPHA 1E3CP 4QAXA 3T02A 2ZKTA 3T01A 5DLTA 1EW9A 5GRRA 2RH6A 3DPCA 5EGHA 4YR1A 2GSUA 4LR9A 2W5RA 4FDIA 4LRAA 3BDHA 3WAXA 3MK1A 3IDDA 4N7TA 5DLWA 4KAYA 1E1ZP 3UNYA 3NKOA 5K4PA 4ZG6A 2QZUA 1Y6VA 4B56A 1ANJA 4GTWA 3MK2A 3WBHA 3IGYB 1AJDA 4LRBA 4LQYA 2W5QA 4UOPA 5IJSA 5LQQA 1HJKA 5LIAA 5LRMA 3M8ZA 2GSNA 3Q3QA 3UN5A 3M8WA 4UPKA 3WAWA 3WAVA 1HQAA 3NKNA 1EW2A 4KJDA 5IJQA 2G9YA 5DLVA 1Y7AA 5EGEA 3BDGA 3T00A 5L0BA 5LRNA 5L0KA 1AJCA 4LRCA 3TWZA 1ED8A 1P49A 1FSUA 2IUCA 4UORA 1AUKA 1SHNA 3BDGB 1E33P 1ELYA 4LR8A 4GTYA 1EJJA 2W5WA 1KH5A 2XR9A 1ALKA 4MHXA 1ALIA 2W5VA 5GOVA 3LXQA 3KD8A 2VQRA 1E2SP 2IFYA 4GTXA 3E2DA 5TJ3A 3NVLA 4UPLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1URB A;  4LRF A;  2W8S A;  1KHN A;  4KAV A;  1HDH A;  1ELZ A;  4FDJ A;  1KH7 A;  2D1G A;  2W5S A;  4LRD A;  1EQJ A;  1K7H A;  1ALH A;  4ZGA A;  4LR7 A;  1N2L A;  1O99 A;  1ZEB A;  3CMR A;  1B8J A;  3NKM A;  1ELX A;  3UO0 A;  3M7V A;  3MK0 A;  3NKP A;  3UN2 A;  3TG0 A;  3SZY A;  2IUC B;  4ZG7 A;  4NWJ A;  5C66 A;  4LRE A;  5KXA A;  1ZED A;  4MY4 A;  5AJ9 A;  4KM4 A;  2X98 A;  4CXS A;  4TN0 A;  1EW8 A;  1URA A;  1O98 A;  5INH A;  4UPI A;  1ZEF A;  4CYS A;  3NKR A;  1EI6 A;  1SHQ A;  4GTZ A;  1ALJ A;  2W5T A;  2GLQ A;  5L0E A;  1N2K A;  4UOO A;  2W8D A;  1KH9 A;  1ED9 A;  3ED4 A;  1KHL A;  3A52 A;  3WAY A;  4NWX A;  1AJA A;  4KJG A;  3UN3 A;  3M8Y A;  3TX0 A;  4ZG9 A;  2GSO A;  2GA3 A;  1AJB A;  4CXK A;  3IGZ B;  1KHJ A;  3BDF A;  4CYR A;  2ANH A;  2W5X A;  3DYC A;  4MIV A;  4CXU A;  3OT9 A;  4LR2 A;  3SZZ A;  1ANI A;  1KH4 A;  3NKQ A;  1KHK A;  3B5Q A;  5HRT A;  2XRG A;  4UPH A;  1E3C P;  4QAX A;  3T02 A;  2ZKT A;  3T01 A;  5DLT A;  1EW9 A;  5GRR A;  2RH6 A;  3DPC A;  5EGH A;  4YR1 A;  2GSU A;  4LR9 A;  2W5R A;  4FDI A;  4LRA A;  3BDH A;  3WAX A;  3MK1 A;  3IDD A;  4N7T A;  5DLW A;  4KAY A;  1E1Z P;  3UNY A;  3NKO A;  5K4P A;  4ZG6 A;  2QZU A;  1Y6V A;  4B56 A;  1ANJ A;  4GTW A;  3MK2 A;  3WBH A;  3IGY B;  1AJD A;  4LRB A;  4LQY A;  2W5Q A;  4UOP A;  5IJS A;  5LQQ A;  1HJK A;  5LIA A;  5LRM A;  3M8Z A;  2GSN A;  3Q3Q A;  3UN5 A;  3M8W A;  4UPK A;  3WAW A;  3WAV A;  1HQA A;  3NKN A;  1EW2 A;  4KJD A;  5IJQ A;  2G9Y A;  5DLV A;  1Y7A A;  5EGE A;  3BDG A;  3T00 A;  5L0B A;  5LRN A;  5L0K A;  1AJC A;  4LRC A;  3TWZ A;  1ED8 A;  1P49 A;  1FSU A;  2IUC A;  4UOR A;  1AUK A;  1SHN A;  3BDG B;  1E33 P;  1ELY A;  4LR8 A;  4GTY A;  1EJJ A;  2W5W A;  1KH5 A;  2XR9 A;  1ALK A;  4MHX A;  1ALI A;  2W5V A;  5GOV A;  3LXQ A;  3KD8 A;  2VQR A;  1E2S P;  2IFY A;  4GTX A;  3E2D A;  5TJ3 A;  3NVL A;  4UPL A; 
#chains in the Genus database with same CATH topology
 1URB A;  4LRF A;  2W8S A;  1KHN A;  4KAV A;  1HDH A;  1ELZ A;  4FDJ A;  1KH7 A;  2D1G A;  2W5S A;  4LRD A;  1EQJ A;  1K7H A;  1ALH A;  4ZGA A;  4LR7 A;  1N2L A;  1O99 A;  1ZEB A;  3CMR A;  1B8J A;  3NKM A;  1ELX A;  3UO0 A;  3M7V A;  3MK0 A;  3NKP A;  3UN2 A;  3TG0 A;  3SZY A;  2IUC B;  4ZG7 A;  4NWJ A;  5C66 A;  4LRE A;  5KXA A;  1ZED A;  4MY4 A;  5AJ9 A;  4KM4 A;  2X98 A;  4CXS A;  4TN0 A;  1EW8 A;  1URA A;  1O98 A;  5INH A;  4UPI A;  1ZEF A;  4CYS A;  3NKR A;  1EI6 A;  1SHQ A;  4GTZ A;  1ALJ A;  2W5T A;  2GLQ A;  5L0E A;  1N2K A;  4UOO A;  2W8D A;  1KH9 A;  1ED9 A;  3ED4 A;  1KHL A;  3A52 A;  3WAY A;  4NWX A;  1AJA A;  4KJG A;  3UN3 A;  3M8Y A;  3TX0 A;  4ZG9 A;  2GSO A;  2GA3 A;  1AJB A;  4CXK A;  3IGZ B;  1KHJ A;  3BDF A;  4CYR A;  2ANH A;  2W5X A;  3DYC A;  4MIV A;  4CXU A;  3OT9 A;  4LR2 A;  3SZZ A;  1ANI A;  1KH4 A;  3NKQ A;  1KHK A;  3B5Q A;  5HRT A;  2XRG A;  4UPH A;  1E3C P;  4QAX A;  3T02 A;  2ZKT A;  3T01 A;  5DLT A;  1EW9 A;  5GRR A;  2RH6 A;  3DPC A;  5EGH A;  4YR1 A;  2GSU A;  4LR9 A;  2W5R A;  4FDI A;  4LRA A;  3BDH A;  3WAX A;  3MK1 A;  3IDD A;  4N7T A;  5DLW A;  4KAY A;  1E1Z P;  3UNY A;  3NKO A;  5K4P A;  4ZG6 A;  2QZU A;  1Y6V A;  4B56 A;  1ANJ A;  4GTW A;  3MK2 A;  3WBH A;  3IGY B;  1AJD A;  4LRB A;  4LQY A;  2W5Q A;  4UOP A;  5IJS A;  5LQQ A;  1HJK A;  5LIA A;  5LRM A;  3M8Z A;  2GSN A;  3Q3Q A;  3UN5 A;  3M8W A;  4UPK A;  3WAW A;  3WAV A;  1HQA A;  3NKN A;  1EW2 A;  4KJD A;  5IJQ A;  2G9Y A;  5DLV A;  1Y7A A;  5EGE A;  3BDG A;  3T00 A;  5L0B A;  5LRN A;  5L0K A;  1AJC A;  4LRC A;  3TWZ A;  1ED8 A;  1P49 A;  1FSU A;  2IUC A;  4UOR A;  1AUK A;  1SHN A;  3BDG B;  1E33 P;  1ELY A;  4LR8 A;  4GTY A;  1EJJ A;  2W5W A;  1KH5 A;  2XR9 A;  1ALK A;  4MHX A;  1ALI A;  2W5V A;  5GOV A;  3LXQ A;  3KD8 A;  2VQR A;  1E2S P;  2IFY A;  4GTX A;  3E2D A;  5TJ3 A;  3NVL A;  4UPL A; 
#chains in the Genus database with same CATH homology
 1URB A;  4LRF A;  2W8S A;  1KHN A;  4KAV A;  1HDH A;  1ELZ A;  4FDJ A;  1KH7 A;  2D1G A;  2W5S A;  4LRD A;  1EQJ A;  1K7H A;  1ALH A;  4ZGA A;  4LR7 A;  1N2L A;  1O99 A;  1ZEB A;  3CMR A;  1B8J A;  3NKM A;  1ELX A;  3UO0 A;  3M7V A;  3MK0 A;  3NKP A;  3UN2 A;  3TG0 A;  3SZY A;  2IUC B;  4ZG7 A;  4NWJ A;  5C66 A;  4LRE A;  5KXA A;  1ZED A;  4MY4 A;  5AJ9 A;  4KM4 A;  2X98 A;  4CXS A;  4TN0 A;  1EW8 A;  1URA A;  1O98 A;  5INH A;  4UPI A;  1ZEF A;  4CYS A;  3NKR A;  1EI6 A;  1SHQ A;  4GTZ A;  1ALJ A;  2W5T A;  2GLQ A;  5L0E A;  1N2K A;  4UOO A;  2W8D A;  1KH9 A;  1ED9 A;  3ED4 A;  1KHL A;  3A52 A;  3WAY A;  4NWX A;  1AJA A;  4KJG A;  3UN3 A;  3M8Y A;  3TX0 A;  4ZG9 A;  2GSO A;  2GA3 A;  1AJB A;  4CXK A;  3IGZ B;  1KHJ A;  3BDF A;  4CYR A;  2ANH A;  2W5X A;  3DYC A;  4MIV A;  4CXU A;  3OT9 A;  4LR2 A;  3SZZ A;  1ANI A;  1KH4 A;  3NKQ A;  1KHK A;  3B5Q A;  5HRT A;  2XRG A;  4UPH A;  1E3C P;  4QAX A;  3T02 A;  2ZKT A;  3T01 A;  5DLT A;  1EW9 A;  5GRR A;  2RH6 A;  3DPC A;  5EGH A;  4YR1 A;  2GSU A;  4LR9 A;  2W5R A;  4FDI A;  4LRA A;  3BDH A;  3WAX A;  3MK1 A;  3IDD A;  4N7T A;  5DLW A;  4KAY A;  1E1Z P;  3UNY A;  3NKO A;  5K4P A;  4ZG6 A;  2QZU A;  1Y6V A;  4B56 A;  1ANJ A;  4GTW A;  3MK2 A;  3WBH A;  3IGY B;  1AJD A;  4LRB A;  4LQY A;  2W5Q A;  4UOP A;  5IJS A;  5LQQ A;  1HJK A;  5LIA A;  5LRM A;  3M8Z A;  2GSN A;  3Q3Q A;  3UN5 A;  3M8W A;  4UPK A;  3WAW A;  3WAV A;  1HQA A;  3NKN A;  1EW2 A;  4KJD A;  5IJQ A;  2G9Y A;  5DLV A;  1Y7A A;  5EGE A;  3BDG A;  3T00 A;  5L0B A;  5LRN A;  5L0K A;  1AJC A;  4LRC A;  3TWZ A;  1ED8 A;  1P49 A;  1FSU A;  2IUC A;  4UOR A;  1AUK A;  1SHN A;  3BDG B;  1E33 P;  1ELY A;  4LR8 A;  4GTY A;  1EJJ A;  2W5W A;  1KH5 A;  2XR9 A;  1ALK A;  4MHX A;  1ALI A;  2W5V A;  5GOV A;  3LXQ A;  3KD8 A;  2VQR A;  1E2S P;  2IFY A;  4GTX A;  3E2D A;  5TJ3 A;  3NVL A;  4UPL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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