2W5XA

Structure of tab5 alkaline phosphatase mutant his 135 glu with mg bound in the m3 site.
Total Genus 131
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
131
Knots found
sequence length
346
structure length
345
Chain Sequence
QLKTPKNVILLISDGAGLSQISSTFYFKSGTPNYTQFKNIGLIKTSSSREDVTDASGATAFSCGIKTYNAAIGVADDSTAVKSIVEIAALNNIKTGVVATSSITEATPASFYAHALNRGLEEEIAMDMTESDLDFFAGGGLNYFTKRKDKKDVLAILKGNQFTINTTALTDFSSIASNRKMGFLLADEAMPTMEKGRGNFLSAATDLAIQFLSKDNSAFFIMSEGSQIDWGGHANNASYLISEINDFDDAIGTALAFAKKDGNTLVIVTSDHETGGFTLAAKKNKREDGSEYSDYTEIGPTFSTGGHSATLIPVFAYGPGSEEFIGIYENNEIFHKILKVTKWNQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords ALKALINE PHOSPHATASE
publication title Coordination Sphere of the Third Metal Site is Essential to the Activity and Metal Selectivity of Alkaline Phosphatases.
pubmed doi rcsb
source organism Antarctic bacterium tab5
total genus 131
structure length 345
sequence length 346
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 2008-12-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 2w5xA00
3M8ZA 3TX0A 4N7TA 4ZG7A 2XRGA 1ED9A 1KHKA 1ZEFA 3BDFA 3DPCA 2IUCB 4KJGA 2GA3A 3IGZB 3M7VA 3M8WA 3TG0A 1AJDA 1ED8A 1KH7A 1N2LA 2QZUA 3DYCA 4GTWA 4LR2A 3BDGA 4LR9A 3NVLA 3B5QA 4TN0A 3SZZA 3BDHA 4UPHA 1E2SP 1O98A 5DLTA 4MHXA 1KH5A 3NKMA 2W5SA 5IJSA 5L0EA 4GTXA 5LRNA 1EQJA 1ALKA 1EJJA 1E33P 1ALJA 1ANIA 4FDJA 3UN3A 3NKQA 5GOVA 2W5QA 5HRTA 4CXKA 4GTZA 4UOOA 4LRCA 2W5XA 4LR8A 4ZG9A 4LREA 4LRBA 4LRDA 3UN5A 4CXSA 5L0KA 3MK0A 3WAWA 4LRAA 5KXAA 5IJQA 4FDIA 2ZKTA 1ALIA 5C66A 2IUCA 4NWJA 3ED4A 4KM4A 1KHJA 1URAA 4KAYA 3LXQA 5L0BA 1E3CP 3A52A 5EGHA 3NKPA 4MY4A 4B56A 1ALHA 3E2DA 3IGYB 2XR9A 3TWZA 4CYRA 3M8YA 2RH6A 4LQYA 4UPKA 1KH9A 5AJ9A 5LIAA 2GSOA 3WAXA 3IDDA 4UPIA 2W5WA 4YR1A 5K4PA 2X98A 2ANHA 4MIVA 4LRFA 3SZYA 5DLWA 1SHNA 1E1ZP 1KHNA 2VQRA 5DLVA 1EW2A 2GSNA 1Y6VA 1ELXA 3Q3QA 1P49A 4UPLA 5LQQA 1AUKA 3MK1A 1HDHA 1ZEDA 2W8DA 4GTYA 3CMRA 1AJBA 4LR7A 1ELZA 1EW8A 4ZG6A 4KAVA 1ZEBA 3OT9A 1K7HA 5EGEA 3WAYA 1HQAA 1EI6A 3WAVA 3BDGB 4CYSA 1SHQA 2G9YA 3MK2A 4UOPA 1HJKA 3WBHA 1ELYA 3NKOA 1AJCA 5LRMA 1Y7AA 3UO0A 5INHA 3UNYA 2W5VA 1B8JA 2W5TA 1KHLA 1EW9A 2GLQA 1FSUA 2GSUA 4ZGAA 4QAXA 3T02A 3T00A 1URBA 2IFYA 4UORA 2D1GA 1KH4A 1ANJA 1O99A 3KD8A 3NKRA 2W8SA 3NKNA 5TJ3A 4CXUA 2W5RA 3UN2A 5GRRA 4NWXA 1N2KA 3T01A 1AJAA 4KJDA
chains in the Genus database with same CATH superfamily
3M8ZA 3TX0A 4N7TA 4ZG7A 2XRGA 1ED9A 1KHKA 1ZEFA 3BDFA 3DPCA 2IUCB 4KJGA 2GA3A 3IGZB 3M7VA 3M8WA 3TG0A 1AJDA 1ED8A 1KH7A 1N2LA 2QZUA 3DYCA 4GTWA 4LR2A 3BDGA 4LR9A 3NVLA 3B5QA 4TN0A 3SZZA 3BDHA 4UPHA 1E2SP 1O98A 5DLTA 4MHXA 1KH5A 3NKMA 2W5SA 5IJSA 5L0EA 4GTXA 5LRNA 1EQJA 1ALKA 1EJJA 1E33P 1ALJA 1ANIA 4FDJA 3UN3A 3NKQA 5GOVA 2W5QA 5HRTA 4CXKA 4GTZA 4UOOA 4LRCA 2W5XA 4LR8A 4ZG9A 4LREA 4LRBA 4LRDA 3UN5A 4CXSA 5L0KA 3MK0A 3WAWA 4LRAA 5KXAA 5IJQA 4FDIA 2ZKTA 1ALIA 5C66A 2IUCA 4NWJA 3ED4A 4KM4A 1KHJA 1URAA 4KAYA 3LXQA 5L0BA 1E3CP 3A52A 5EGHA 3NKPA 4MY4A 4B56A 1ALHA 3E2DA 3IGYB 2XR9A 3TWZA 4CYRA 3M8YA 2RH6A 4LQYA 4UPKA 1KH9A 5AJ9A 5LIAA 2GSOA 3WAXA 3IDDA 4UPIA 2W5WA 4YR1A 5K4PA 2X98A 2ANHA 4MIVA 4LRFA 3SZYA 5DLWA 1SHNA 1E1ZP 1KHNA 2VQRA 5DLVA 1EW2A 2GSNA 1Y6VA 1ELXA 3Q3QA 1P49A 4UPLA 5LQQA 1AUKA 3MK1A 1HDHA 1ZEDA 2W8DA 4GTYA 3CMRA 1AJBA 4LR7A 1ELZA 1EW8A 4ZG6A 4KAVA 1ZEBA 3OT9A 1K7HA 5EGEA 3WAYA 1HQAA 1EI6A 3WAVA 3BDGB 4CYSA 1SHQA 2G9YA 3MK2A 4UOPA 1HJKA 3WBHA 1ELYA 3NKOA 1AJCA 5LRMA 1Y7AA 3UO0A 5INHA 3UNYA 2W5VA 1B8JA 2W5TA 1KHLA 1EW9A 2GLQA 1FSUA 2GSUA 4ZGAA 4QAXA 3T02A 3T00A 1URBA 2IFYA 4UORA 2D1GA 1KH4A 1ANJA 1O99A 3KD8A 3NKRA 2W8SA 3NKNA 5TJ3A 4CXUA 2W5RA 3UN2A 5GRRA 4NWXA 1N2KA 3T01A 1AJAA 4KJDA
chains in the Genus database with same CATH topology
3M8ZA 3TX0A 4N7TA 4ZG7A 2XRGA 1ED9A 1KHKA 1ZEFA 3BDFA 3DPCA 2IUCB 4KJGA 2GA3A 3IGZB 3M7VA 3M8WA 3TG0A 1AJDA 1ED8A 1KH7A 1N2LA 2QZUA 3DYCA 4GTWA 4LR2A 3BDGA 4LR9A 3NVLA 3B5QA 4TN0A 3SZZA 3BDHA 4UPHA 1E2SP 1O98A 5DLTA 4MHXA 1KH5A 3NKMA 2W5SA 5IJSA 5L0EA 4GTXA 5LRNA 1EQJA 1ALKA 1EJJA 1E33P 1ALJA 1ANIA 4FDJA 3UN3A 3NKQA 5GOVA 2W5QA 5HRTA 4CXKA 4GTZA 4UOOA 4LRCA 2W5XA 4LR8A 4ZG9A 4LREA 4LRBA 4LRDA 3UN5A 4CXSA 5L0KA 3MK0A 3WAWA 4LRAA 5KXAA 5IJQA 4FDIA 2ZKTA 1ALIA 5C66A 2IUCA 4NWJA 3ED4A 4KM4A 1KHJA 1URAA 4KAYA 3LXQA 5L0BA 1E3CP 3A52A 5EGHA 3NKPA 4MY4A 4B56A 1ALHA 3E2DA 3IGYB 2XR9A 3TWZA 4CYRA 3M8YA 2RH6A 4LQYA 4UPKA 1KH9A 5AJ9A 5LIAA 2GSOA 3WAXA 3IDDA 4UPIA 2W5WA 4YR1A 5K4PA 2X98A 2ANHA 4MIVA 4LRFA 3SZYA 5DLWA 1SHNA 1E1ZP 1KHNA 2VQRA 5DLVA 1EW2A 2GSNA 1Y6VA 1ELXA 3Q3QA 1P49A 4UPLA 5LQQA 1AUKA 3MK1A 1HDHA 1ZEDA 2W8DA 4GTYA 3CMRA 1AJBA 4LR7A 1ELZA 1EW8A 4ZG6A 4KAVA 1ZEBA 3OT9A 1K7HA 5EGEA 3WAYA 1HQAA 1EI6A 3WAVA 3BDGB 4CYSA 1SHQA 2G9YA 3MK2A 4UOPA 1HJKA 3WBHA 1ELYA 3NKOA 1AJCA 5LRMA 1Y7AA 3UO0A 5INHA 3UNYA 2W5VA 1B8JA 2W5TA 1KHLA 1EW9A 2GLQA 1FSUA 2GSUA 4ZGAA 4QAXA 3T02A 3T00A 1URBA 2IFYA 4UORA 2D1GA 1KH4A 1ANJA 1O99A 3KD8A 3NKRA 2W8SA 3NKNA 5TJ3A 4CXUA 2W5RA 3UN2A 5GRRA 4NWXA 1N2KA 3T01A 1AJAA 4KJDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3M8Z A;  3TX0 A;  4N7T A;  4ZG7 A;  2XRG A;  1ED9 A;  1KHK A;  1ZEF A;  3BDF A;  3DPC A;  2IUC B;  4KJG A;  2GA3 A;  3IGZ B;  3M7V A;  3M8W A;  3TG0 A;  1AJD A;  1ED8 A;  1KH7 A;  1N2L A;  2QZU A;  3DYC A;  4GTW A;  4LR2 A;  3BDG A;  4LR9 A;  3NVL A;  3B5Q A;  4TN0 A;  3SZZ A;  3BDH A;  4UPH A;  1E2S P;  1O98 A;  5DLT A;  4MHX A;  1KH5 A;  3NKM A;  2W5S A;  5IJS A;  5L0E A;  4GTX A;  5LRN A;  1EQJ A;  1ALK A;  1EJJ A;  1E33 P;  1ALJ A;  1ANI A;  4FDJ A;  3UN3 A;  3NKQ A;  5GOV A;  2W5Q A;  5HRT A;  4CXK A;  4GTZ A;  4UOO A;  4LRC A;  2W5X A;  4LR8 A;  4ZG9 A;  4LRE A;  4LRB A;  4LRD A;  3UN5 A;  4CXS A;  5L0K A;  3MK0 A;  3WAW A;  4LRA A;  5KXA A;  5IJQ A;  4FDI A;  2ZKT A;  1ALI A;  5C66 A;  2IUC A;  4NWJ A;  3ED4 A;  4KM4 A;  1KHJ A;  1URA A;  4KAY A;  3LXQ A;  5L0B A;  1E3C P;  3A52 A;  5EGH A;  3NKP A;  4MY4 A;  4B56 A;  1ALH A;  3E2D A;  3IGY B;  2XR9 A;  3TWZ A;  4CYR A;  3M8Y A;  2RH6 A;  4LQY A;  4UPK A;  1KH9 A;  5AJ9 A;  5LIA A;  2GSO A;  3WAX A;  3IDD A;  4UPI A;  2W5W A;  4YR1 A;  5K4P A;  2X98 A;  2ANH A;  4MIV A;  4LRF A;  3SZY A;  5DLW A;  1SHN A;  1E1Z P;  1KHN A;  2VQR A;  5DLV A;  1EW2 A;  2GSN A;  1Y6V A;  1ELX A;  3Q3Q A;  1P49 A;  4UPL A;  5LQQ A;  1AUK A;  3MK1 A;  1HDH A;  1ZED A;  2W8D A;  4GTY A;  3CMR A;  1AJB A;  4LR7 A;  1ELZ A;  1EW8 A;  4ZG6 A;  4KAV A;  1ZEB A;  3OT9 A;  1K7H A;  5EGE A;  3WAY A;  1HQA A;  1EI6 A;  3WAV A;  3BDG B;  4CYS A;  1SHQ A;  2G9Y A;  3MK2 A;  4UOP A;  1HJK A;  3WBH A;  1ELY A;  3NKO A;  1AJC A;  5LRM A;  1Y7A A;  3UO0 A;  5INH A;  3UNY A;  2W5V A;  1B8J A;  2W5T A;  1KHL A;  1EW9 A;  2GLQ A;  1FSU A;  2GSU A;  4ZGA A;  4QAX A;  3T02 A;  3T00 A;  1URB A;  2IFY A;  4UOR A;  2D1G A;  1KH4 A;  1ANJ A;  1O99 A;  3KD8 A;  3NKR A;  2W8S A;  3NKN A;  5TJ3 A;  4CXU A;  2W5R A;  3UN2 A;  5GRR A;  4NWX A;  1N2K A;  3T01 A;  1AJA A;  4KJD A; 
#chains in the Genus database with same CATH topology
 3M8Z A;  3TX0 A;  4N7T A;  4ZG7 A;  2XRG A;  1ED9 A;  1KHK A;  1ZEF A;  3BDF A;  3DPC A;  2IUC B;  4KJG A;  2GA3 A;  3IGZ B;  3M7V A;  3M8W A;  3TG0 A;  1AJD A;  1ED8 A;  1KH7 A;  1N2L A;  2QZU A;  3DYC A;  4GTW A;  4LR2 A;  3BDG A;  4LR9 A;  3NVL A;  3B5Q A;  4TN0 A;  3SZZ A;  3BDH A;  4UPH A;  1E2S P;  1O98 A;  5DLT A;  4MHX A;  1KH5 A;  3NKM A;  2W5S A;  5IJS A;  5L0E A;  4GTX A;  5LRN A;  1EQJ A;  1ALK A;  1EJJ A;  1E33 P;  1ALJ A;  1ANI A;  4FDJ A;  3UN3 A;  3NKQ A;  5GOV A;  2W5Q A;  5HRT A;  4CXK A;  4GTZ A;  4UOO A;  4LRC A;  2W5X A;  4LR8 A;  4ZG9 A;  4LRE A;  4LRB A;  4LRD A;  3UN5 A;  4CXS A;  5L0K A;  3MK0 A;  3WAW A;  4LRA A;  5KXA A;  5IJQ A;  4FDI A;  2ZKT A;  1ALI A;  5C66 A;  2IUC A;  4NWJ A;  3ED4 A;  4KM4 A;  1KHJ A;  1URA A;  4KAY A;  3LXQ A;  5L0B A;  1E3C P;  3A52 A;  5EGH A;  3NKP A;  4MY4 A;  4B56 A;  1ALH A;  3E2D A;  3IGY B;  2XR9 A;  3TWZ A;  4CYR A;  3M8Y A;  2RH6 A;  4LQY A;  4UPK A;  1KH9 A;  5AJ9 A;  5LIA A;  2GSO A;  3WAX A;  3IDD A;  4UPI A;  2W5W A;  4YR1 A;  5K4P A;  2X98 A;  2ANH A;  4MIV A;  4LRF A;  3SZY A;  5DLW A;  1SHN A;  1E1Z P;  1KHN A;  2VQR A;  5DLV A;  1EW2 A;  2GSN A;  1Y6V A;  1ELX A;  3Q3Q A;  1P49 A;  4UPL A;  5LQQ A;  1AUK A;  3MK1 A;  1HDH A;  1ZED A;  2W8D A;  4GTY A;  3CMR A;  1AJB A;  4LR7 A;  1ELZ A;  1EW8 A;  4ZG6 A;  4KAV A;  1ZEB A;  3OT9 A;  1K7H A;  5EGE A;  3WAY A;  1HQA A;  1EI6 A;  3WAV A;  3BDG B;  4CYS A;  1SHQ A;  2G9Y A;  3MK2 A;  4UOP A;  1HJK A;  3WBH A;  1ELY A;  3NKO A;  1AJC A;  5LRM A;  1Y7A A;  3UO0 A;  5INH A;  3UNY A;  2W5V A;  1B8J A;  2W5T A;  1KHL A;  1EW9 A;  2GLQ A;  1FSU A;  2GSU A;  4ZGA A;  4QAX A;  3T02 A;  3T00 A;  1URB A;  2IFY A;  4UOR A;  2D1G A;  1KH4 A;  1ANJ A;  1O99 A;  3KD8 A;  3NKR A;  2W8S A;  3NKN A;  5TJ3 A;  4CXU A;  2W5R A;  3UN2 A;  5GRR A;  4NWX A;  1N2K A;  3T01 A;  1AJA A;  4KJD A; 
#chains in the Genus database with same CATH homology
 3M8Z A;  3TX0 A;  4N7T A;  4ZG7 A;  2XRG A;  1ED9 A;  1KHK A;  1ZEF A;  3BDF A;  3DPC A;  2IUC B;  4KJG A;  2GA3 A;  3IGZ B;  3M7V A;  3M8W A;  3TG0 A;  1AJD A;  1ED8 A;  1KH7 A;  1N2L A;  2QZU A;  3DYC A;  4GTW A;  4LR2 A;  3BDG A;  4LR9 A;  3NVL A;  3B5Q A;  4TN0 A;  3SZZ A;  3BDH A;  4UPH A;  1E2S P;  1O98 A;  5DLT A;  4MHX A;  1KH5 A;  3NKM A;  2W5S A;  5IJS A;  5L0E A;  4GTX A;  5LRN A;  1EQJ A;  1ALK A;  1EJJ A;  1E33 P;  1ALJ A;  1ANI A;  4FDJ A;  3UN3 A;  3NKQ A;  5GOV A;  2W5Q A;  5HRT A;  4CXK A;  4GTZ A;  4UOO A;  4LRC A;  2W5X A;  4LR8 A;  4ZG9 A;  4LRE A;  4LRB A;  4LRD A;  3UN5 A;  4CXS A;  5L0K A;  3MK0 A;  3WAW A;  4LRA A;  5KXA A;  5IJQ A;  4FDI A;  2ZKT A;  1ALI A;  5C66 A;  2IUC A;  4NWJ A;  3ED4 A;  4KM4 A;  1KHJ A;  1URA A;  4KAY A;  3LXQ A;  5L0B A;  1E3C P;  3A52 A;  5EGH A;  3NKP A;  4MY4 A;  4B56 A;  1ALH A;  3E2D A;  3IGY B;  2XR9 A;  3TWZ A;  4CYR A;  3M8Y A;  2RH6 A;  4LQY A;  4UPK A;  1KH9 A;  5AJ9 A;  5LIA A;  2GSO A;  3WAX A;  3IDD A;  4UPI A;  2W5W A;  4YR1 A;  5K4P A;  2X98 A;  2ANH A;  4MIV A;  4LRF A;  3SZY A;  5DLW A;  1SHN A;  1E1Z P;  1KHN A;  2VQR A;  5DLV A;  1EW2 A;  2GSN A;  1Y6V A;  1ELX A;  3Q3Q A;  1P49 A;  4UPL A;  5LQQ A;  1AUK A;  3MK1 A;  1HDH A;  1ZED A;  2W8D A;  4GTY A;  3CMR A;  1AJB A;  4LR7 A;  1ELZ A;  1EW8 A;  4ZG6 A;  4KAV A;  1ZEB A;  3OT9 A;  1K7H A;  5EGE A;  3WAY A;  1HQA A;  1EI6 A;  3WAV A;  3BDG B;  4CYS A;  1SHQ A;  2G9Y A;  3MK2 A;  4UOP A;  1HJK A;  3WBH A;  1ELY A;  3NKO A;  1AJC A;  5LRM A;  1Y7A A;  3UO0 A;  5INH A;  3UNY A;  2W5V A;  1B8J A;  2W5T A;  1KHL A;  1EW9 A;  2GLQ A;  1FSU A;  2GSU A;  4ZGA A;  4QAX A;  3T02 A;  3T00 A;  1URB A;  2IFY A;  4UOR A;  2D1G A;  1KH4 A;  1ANJ A;  1O99 A;  3KD8 A;  3NKR A;  2W8S A;  3NKN A;  5TJ3 A;  4CXU A;  2W5R A;  3UN2 A;  5GRR A;  4NWX A;  1N2K A;  3T01 A;  1AJA A;  4KJD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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