2X3XA

Structure of mouse syndapin i (crystal form 1)
Total Genus 112
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
112
sequence length
291
structure length
291
Chain Sequence
DSFWEVGNYKRTVKRIDDGHRLCNDLMSCVQERAKIEKAYAQQLTDWAKRWRQLIEKGPQYGSLERAWGAMMTEADKVSELHQEVKNSLLNEDLEKVKNWQKDAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEERLAMTREMNSKTEQSVTPEQQKKLVDKVDKCRQDVQKTQEKYEKVLEDVGKTTPQYMEGMEQVFEQCQQFEEKRLVFLKEVLLDIKRHLNLAENSSYMHVYRELEQAIRGADAQEDLRWFRSTSGPGMPMNWPQFEEWNP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Endocytosis
molecule keywords PROTEIN KINASE C AND CASEIN KINASE SUBSTRATE IN NEURONS PROT
publication title Molecular Basis for SH3 Domain Regulation of F-Bar-Mediated Membrane Deformation.
pubmed doi rcsb
source organism Mus musculus
total genus 112
structure length 291
sequence length 291
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2010-01-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00611 FCH Fes/CIP4, and EFC/F-BAR homology domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.60 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Arfaptin homology (AH) domain/BAR domain 2x3xA01
3G9GA 4AVMA 3OK8A 4DYLA 3ACOA 4BNEA 3HAIA 4NSWA 2RAKA 2Q13A 3Q84A 2X3XA 3I2WA 1URUA 2Z0NA 3M3WA 4I1QA 4NQIA 3QNIA 2D4CA 4WPEA 1I49A 1I4LA 1X04A 3QE6A 3CAZA 2D1LA 2RAJA 2V0OA 2C08A 4WPCA 2YKTA 2EFKA 3DYTA 4AKVA 1ZWWA 2Z0OA 3LLLA 1I4DA 2Q12A 2ELBA 4H8SA 2X3WA 3Q0KA 5C5BB 4DCNC 1X03A 3SOGA 2Z0VA 4FZSA 2RAIA 3PLTA 3ABHA 2EFLA 2FICA 3HAJA 1I4TA 3QWEA 5C5BA 1WDZA 2X3VA 3HAHA 1Y2OA 4ATMA 3SYVA
chains in the Genus database with same CATH superfamily
1GNTA 3D51A 4UDXX 2LM0A 1O7DC 1ZYLA 4B9QA 2YLAA 3DX0A 3KAVA 2EX3B 4F00A 4H6HA 1OA1A 4AZIA 2FYVA 1E2UA 4EZRA 4AZGA 2EWFA 3L3OM 3D4ZA 3T49A 2OBLA 3DX4A 4F01A 1DKXA 1O7DB 2X5CA 4JWDA 2ALWA 1R34A 3HAHA 4ATMA 4M0MA 4DYLA 4EZNA 2Z0NA 2GAFD 2D1LA 2OW6A 3B52X 1DKZA 3O3MB 3SYVA 4EZPA 3O3OB 1R5EA 2Q13A 4IW0A 4I1QA 3DDGA 3QNIA 3CAZA 3BUIA 2YKTA 2Q12A 3DPQA 2WINM 4DCNC 3PLTA 1TQWA 1I4TA 3QWEA 3VEAA 2QXLA 4R5IA 3RPMA 1MJGA 3RV0A 3BUDA 4AZCB 4EZXA 2YI9A 3EJPA 2NCZA 2QFFA 3Q0KA 4JN4A 2OZNB 1HXKA 4EZUA 4H6IA 4JWIA 3HAIA 4NSWA 3F7WA 4HR1A 3M3WA 2RT6A 4E3CA 2GF4A 4AKVA 1X03A 2PY6A 4EZZA 4IWOA 1TQSA 3BVTA 5C5BA 1TQVA 3I39X 1HWWA 3ER9B 4JL9A 4R5JA 2ND0A 2YIVX 4G6QA 3EJTA 4EZTA 1QWUA 3FD9A 2D4CA 4D8JA 4IM2A 3GI7A 1E1DA 2Z0OA 1I4DA 3L3PA 4IM0A 3VEBA 1UPXA 1SU6A 4R5KA 2X3VA 3BUBA 1R33A 3OHXM 3T48A 4AZBA 2PMRA 4EZVA 4IM3A 2F18A 3C7NA 2F1AA 4NQIA 1QX1A 2YL6A 4AZ7A 1X04A 1U00A 3A98A 3O3NB 1SU8A 2X3WA 4JLCA 3SOGA 2YL8A 2ND1A 2Z0VA 1Y2OA 1QWNA 1GNLA 1YWMA 3B53X 1GN9A 1OA0A 3EJQA 1I4LA 4FZOA 2C08A 4R5GA 3UITA 3B51X 1HTYA 3BUPA 4UDYX 4H8SA 1LQ7A 4EZSA 3BUQA 3BVWA 3QA8A 2GA9D 3ER8C 3D50A 4BNEA 3BVUA 2N3KA 3CV5A 3DDFA 2YLLA 1ZWWA 3EJRA 2WYHA 3DPOA 4JNFA 2FICA 4KIKA 1SU7A 3BLBA 3BVVA 3I04A 3G9GA 2X3XA 1PS3A 4WPEA 2RAJA 2V0OA 4E81A 1SUFA 3DYTA 4EZWA 4HYBA 3EJSA 5KBPA 3HAJA 2YI8A 3DPPA 4HR1B 4AZ6A 2F7OA 3CZNA 3I2WA 4NPHA 2QKWA 1I49A 3D52A 3D4YA 5C5BB 4IWPA 2WYIA 3QNJA 3DX1A 2RAIA 4FZPA 2YL9A 3T46A 3T47A 3KDRA 2MI7A 3OWGA 2O0I1 3RV1A 4EZOA 1OAOA 3CZSA 5FIGA 2LXYA 3I01A 3ERCC 2ELBA 3VKHA 2OW7A 4JWCA 3ABHA 2YL5A 3BVXA 3OK8A 1JQKA 4HY9A 5E84A 3DX2A 3QE6A 4IWQA 2F1BA 3ZEDA 1E9VA 2Z8YA 3LLLA 2F7PA 4AZHA 1TQTA 4FZSA 3D2EA 4JNEA 2F7RA 1WDZA 2YIAA 2KHOA 5TKYA 3D2FA 1W9MA 2JNSA 3Q84A 1URUA 2OO2A 1TQUA 4R5LA 2JNKA 3EJUA 4WPCA 4EZQA 2EFKA 4AZCA 3T4AG 2YIBA 3CKDA 4PO2A 3LMFA 2OBMA 2ZXQA 2F7QA 3KAWA 3DX3A 4AVMA 3ACOA 4AZ5A 2RAKA 4JWEA 3CVRA 3LVTA 4FM3A 4KIKB 1DKYA 2EFLA 5FLEX 4EZYA
chains in the Genus database with same CATH topology
3G9GA 4AVMA 3OK8A 4DYLA 3ACOA 4BNEA 3HAIA 4NSWA 2RAKA 2Q13A 3Q84A 2X3XA 3I2WA 1URUA 2Z0NA 3M3WA 4I1QA 4NQIA 3QNIA 2D4CA 4WPEA 1I49A 1I4LA 1X04A 3QE6A 3CAZA 2D1LA 2RAJA 2V0OA 2C08A 4WPCA 2YKTA 2EFKA 3DYTA 4AKVA 1ZWWA 2Z0OA 3LLLA 1I4DA 2Q12A 2ELBA 4H8SA 2X3WA 3Q0KA 5C5BB 4DCNC 1X03A 3SOGA 2Z0VA 4FZSA 2RAIA 3PLTA 3ABHA 2EFLA 2FICA 3HAJA 1I4TA 3QWEA 5C5BA 1WDZA 2X3VA 3HAHA 1Y2OA 4ATMA 3SYVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3G9G A;  4AVM A;  3OK8 A;  4DYL A;  3ACO A;  4BNE A;  3HAI A;  4NSW A;  2RAK A;  2Q13 A;  3Q84 A;  2X3X A;  3I2W A;  1URU A;  2Z0N A;  3M3W A;  4I1Q A;  4NQI A;  3QNI A;  2D4C A;  4WPE A;  1I49 A;  1I4L A;  1X04 A;  3QE6 A;  3CAZ A;  2D1L A;  2RAJ A;  2V0O A;  2C08 A;  4WPC A;  2YKT A;  2EFK A;  3DYT A;  4AKV A;  1ZWW A;  2Z0O A;  3LLL A;  1I4D A;  2Q12 A;  2ELB A;  4H8S A;  2X3W A;  3Q0K A;  5C5B B;  4DCN C;  1X03 A;  3SOG A;  2Z0V A;  4FZS A;  2RAI A;  3PLT A;  3ABH A;  2EFL A;  2FIC A;  3HAJ A;  1I4T A;  3QWE A;  5C5B A;  1WDZ A;  2X3V A;  3HAH A;  1Y2O A;  4ATM A;  3SYV A; 
#chains in the Genus database with same CATH topology
 1GNT A;  3D51 A;  4UDX X;  2LM0 A;  1O7D C;  1ZYL A;  4B9Q A;  2YLA A;  3DX0 A;  3KAV A;  2EX3 B;  4F00 A;  4H6H A;  1OA1 A;  4AZI A;  2FYV A;  1E2U A;  4EZR A;  4AZG A;  2EWF A;  3L3O M;  3D4Z A;  3T49 A;  2OBL A;  3DX4 A;  4F01 A;  1DKX A;  1O7D B;  2X5C A;  4JWD A;  2ALW A;  1R34 A;  3HAH A;  4ATM A;  4M0M A;  4DYL A;  4EZN A;  2Z0N A;  2GAF D;  2D1L A;  2OW6 A;  3B52 X;  1DKZ A;  3O3M B;  3SYV A;  4EZP A;  3O3O B;  1R5E A;  2Q13 A;  4IW0 A;  4I1Q A;  3DDG A;  3QNI A;  3CAZ A;  3BUI A;  2YKT A;  2Q12 A;  3DPQ A;  2WIN M;  4DCN C;  3PLT A;  1TQW A;  1I4T A;  3QWE A;  3VEA A;  2QXL A;  4R5I A;  3RPM A;  1MJG A;  3RV0 A;  3BUD A;  4AZC B;  4EZX A;  2YI9 A;  3EJP A;  2NCZ A;  2QFF A;  3Q0K A;  4JN4 A;  2OZN B;  1HXK A;  4EZU A;  4H6I A;  4JWI A;  3HAI A;  4NSW A;  3F7W A;  4HR1 A;  3M3W A;  2RT6 A;  4E3C A;  2GF4 A;  4AKV A;  1X03 A;  2PY6 A;  4EZZ A;  4IWO A;  1TQS A;  3BVT A;  5C5B A;  1TQV A;  3I39 X;  1HWW A;  3ER9 B;  4JL9 A;  4R5J A;  2ND0 A;  2YIV X;  4G6Q A;  3EJT A;  4EZT A;  1QWU A;  3FD9 A;  2D4C A;  4D8J A;  4IM2 A;  3GI7 A;  1E1D A;  2Z0O A;  1I4D A;  3L3P A;  4IM0 A;  3VEB A;  1UPX A;  1SU6 A;  4R5K A;  2X3V A;  3BUB A;  1R33 A;  3OHX M;  3T48 A;  4AZB A;  2PMR A;  4EZV A;  4IM3 A;  2F18 A;  3C7N A;  2F1A A;  4NQI A;  1QX1 A;  2YL6 A;  4AZ7 A;  1X04 A;  1U00 A;  3A98 A;  3O3N B;  1SU8 A;  2X3W A;  4JLC A;  3SOG A;  2YL8 A;  2ND1 A;  2Z0V A;  1Y2O A;  1QWN A;  1GNL A;  1YWM A;  3B53 X;  1GN9 A;  1OA0 A;  3EJQ A;  1I4L A;  4FZO A;  2C08 A;  4R5G A;  3UIT A;  3B51 X;  1HTY A;  3BUP A;  4UDY X;  4H8S A;  1LQ7 A;  4EZS A;  3BUQ A;  3BVW A;  3QA8 A;  2GA9 D;  3ER8 C;  3D50 A;  4BNE A;  3BVU A;  2N3K A;  3CV5 A;  3DDF A;  2YLL A;  1ZWW A;  3EJR A;  2WYH A;  3DPO A;  4JNF A;  2FIC A;  4KIK A;  1SU7 A;  3BLB A;  3BVV A;  3I04 A;  3G9G A;  2X3X A;  1PS3 A;  4WPE A;  2RAJ A;  2V0O A;  4E81 A;  1SUF A;  3DYT A;  4EZW A;  4HYB A;  3EJS A;  5KBP A;  3HAJ A;  2YI8 A;  3DPP A;  4HR1 B;  4AZ6 A;  2F7O A;  3CZN A;  3I2W A;  4NPH A;  2QKW A;  1I49 A;  3D52 A;  3D4Y A;  5C5B B;  4IWP A;  2WYI A;  3QNJ A;  3DX1 A;  2RAI A;  4FZP A;  2YL9 A;  3T46 A;  3T47 A;  3KDR A;  2MI7 A;  3OWG A;  2O0I 1;  3RV1 A;  4EZO A;  1OAO A;  3CZS A;  5FIG A;  2LXY A;  3I01 A;  3ERC C;  2ELB A;  3VKH A;  2OW7 A;  4JWC A;  3ABH A;  2YL5 A;  3BVX A;  3OK8 A;  1JQK A;  4HY9 A;  5E84 A;  3DX2 A;  3QE6 A;  4IWQ A;  2F1B A;  3ZED A;  1E9V A;  2Z8Y A;  3LLL A;  2F7P A;  4AZH A;  1TQT A;  4FZS A;  3D2E A;  4JNE A;  2F7R A;  1WDZ A;  2YIA A;  2KHO A;  5TKY A;  3D2F A;  1W9M A;  2JNS A;  3Q84 A;  1URU A;  2OO2 A;  1TQU A;  4R5L A;  2JNK A;  3EJU A;  4WPC A;  4EZQ A;  2EFK A;  4AZC A;  3T4A G;  2YIB A;  3CKD A;  4PO2 A;  3LMF A;  2OBM A;  2ZXQ A;  2F7Q A;  3KAW A;  3DX3 A;  4AVM A;  3ACO A;  4AZ5 A;  2RAK A;  4JWE A;  3CVR A;  3LVT A;  4FM3 A;  4KIK B;  1DKY A;  2EFL A;  5FLE X;  4EZY A; 
#chains in the Genus database with same CATH homology
 3G9G A;  4AVM A;  3OK8 A;  4DYL A;  3ACO A;  4BNE A;  3HAI A;  4NSW A;  2RAK A;  2Q13 A;  3Q84 A;  2X3X A;  3I2W A;  1URU A;  2Z0N A;  3M3W A;  4I1Q A;  4NQI A;  3QNI A;  2D4C A;  4WPE A;  1I49 A;  1I4L A;  1X04 A;  3QE6 A;  3CAZ A;  2D1L A;  2RAJ A;  2V0O A;  2C08 A;  4WPC A;  2YKT A;  2EFK A;  3DYT A;  4AKV A;  1ZWW A;  2Z0O A;  3LLL A;  1I4D A;  2Q12 A;  2ELB A;  4H8S A;  2X3W A;  3Q0K A;  5C5B B;  4DCN C;  1X03 A;  3SOG A;  2Z0V A;  4FZS A;  2RAI A;  3PLT A;  3ABH A;  2EFL A;  2FIC A;  3HAJ A;  1I4T A;  3QWE A;  5C5B A;  1WDZ A;  2X3V A;  3HAH A;  1Y2O A;  4ATM A;  3SYV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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