2X5TA

Crystal structure of orf131 from sulfolobus islandicus rudivirus 1
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
94
structure length
93
Chain Sequence
ASLKEIIDELGKQAKEQNKIASRILKIKGIKRIVVQLNAVPQDKIRYSLTIHSQNNFRKQIGITPQDAEDLKLIAEFLEKYSDFLNEYVKFTP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Viral protein
molecule keywords ORF 131
publication title The Scottish Structural Proteomics Facility: Targets, Methods and Outputs.
pubmed doi rcsb
source organism Sulfolobus islandicus rudivirus 1
total genus 21
structure length 93
sequence length 94
ec nomenclature
pdb deposition date 2010-02-10
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.720.60 Alpha Beta 2-Layer Sandwich Signal recognition particle alu RNA binding heterodimer, srp9/1 Signal recognition particle alu RNA binding heterodimer, srp9/1 2x5tA00
2X5GA 2X5HA 2X5TA
chains in the Genus database with same CATH superfamily
1UJRA 3TU3B 4GYYA 4GZ3A 1QMOE 4XIFA 3OMSA 1X4RA 3PE4A 2W9JA 4GYWA 2DK6A 2RSFA 5BNWA 2FFGA 5AOXA 4GZ6A 5AOXB 3SK1A 4N3AA 2KJZA 3VCXA 1JNZB 3GYXB 4N3CA 4GZ5A 3PE3A 4XI9A 4AKXB 1U7IA 2X5TA 5C1DA 2FJBB 2FJAB 3ITWA 1E8OA 3TAXA 1914A 2K4NA 2FJDB 1E8OB 2A90A 4AY6A 2X5GA 4UYJA 2FJEB 1JNRB 4CDRA 2X5HA 3BT3A 4N39A 3V3LA 4AY5A 4UYJB 4UYKA 4N3BA 4UYKB
chains in the Genus database with same CATH topology
1UJRA 3TU3B 4GYYA 4GZ3A 1QMOE 4XIFA 3OMSA 1X4RA 3PE4A 2W9JA 4GYWA 2DK6A 2RSFA 5BNWA 2FFGA 5AOXA 4GZ6A 5AOXB 3SK1A 4N3AA 2KJZA 3VCXA 1JNZB 3GYXB 4N3CA 4GZ5A 3PE3A 4XI9A 4AKXB 1U7IA 2X5TA 5C1DA 2FJBB 2FJAB 3ITWA 1E8OA 3TAXA 1914A 2K4NA 2FJDB 1E8OB 2A90A 4AY6A 2X5GA 4UYJA 2FJEB 1JNRB 4CDRA 2X5HA 3BT3A 4N39A 3V3LA 4AY5A 4UYJB 4UYKA 4N3BA 4UYKB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2X5G A;  2X5H A;  2X5T A; 
#chains in the Genus database with same CATH topology
 1UJR A;  3TU3 B;  4GYY A;  4GZ3 A;  1QMO E;  4XIF A;  3OMS A;  1X4R A;  3PE4 A;  2W9J A;  4GYW A;  2DK6 A;  2RSF A;  5BNW A;  2FFG A;  5AOX A;  4GZ6 A;  5AOX B;  3SK1 A;  4N3A A;  2KJZ A;  3VCX A;  1JNZ B;  3GYX B;  4N3C A;  4GZ5 A;  3PE3 A;  4XI9 A;  4AKX B;  1U7I A;  2X5T A;  5C1D A;  2FJB B;  2FJA B;  3ITW A;  1E8O A;  3TAX A;  1914 A;  2K4N A;  2FJD B;  1E8O B;  2A90 A;  4AY6 A;  2X5G A;  4UYJ A;  2FJE B;  1JNR B;  4CDR A;  2X5H A;  3BT3 A;  4N39 A;  3V3L A;  4AY5 A;  4UYJ B;  4UYK A;  4N3B A;  4UYK B; 
#chains in the Genus database with same CATH homology
 1UJR A;  3TU3 B;  4GYY A;  4GZ3 A;  1QMO E;  4XIF A;  3OMS A;  1X4R A;  3PE4 A;  2W9J A;  4GYW A;  2DK6 A;  2RSF A;  5BNW A;  2FFG A;  5AOX A;  4GZ6 A;  5AOX B;  3SK1 A;  4N3A A;  2KJZ A;  3VCX A;  1JNZ B;  3GYX B;  4N3C A;  4GZ5 A;  3PE3 A;  4XI9 A;  4AKX B;  1U7I A;  2X5T A;  5C1D A;  2FJB B;  2FJA B;  3ITW A;  1E8O A;  3TAX A;  1914 A;  2K4N A;  2FJD B;  1E8O B;  2A90 A;  4AY6 A;  2X5G A;  4UYJ A;  2FJE B;  1JNR B;  4CDR A;  2X5H A;  3BT3 A;  4N39 A;  3V3L A;  4AY5 A;  4UYJ B;  4UYK A;  4N3B A;  4UYK B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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