2XT1A

Crystal structure of the hiv-1 capsid protein c-terminal domain (146- 231) in complex with a camelid vhh.
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
86
structure length
86
Chain Sequence
SPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPGATLEEMMTACQGVGGPGHKARVL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Viral protein/immune system
molecule keywords GAG POLYPROTEIN
publication title Targeting HIV-1 Virion Formation with Nanobodies -Implications for the Design of Assembly Inhibitors
rcsb
source organism Human immunodeficiency virus 1
total genus 29
structure length 86
sequence length 86
ec nomenclature
pdb deposition date 2010-10-03
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.30 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 2xt1A00
3G0VA 4XRQA 2BUOA 3DPHA 3G1GA 5HGMA 2LF4A 3NTEA 4IPYA 1QRJA 2KODA 2JYGA 2L6EA 3G29A 3DS5A 3VRLC 4XFZA 2M8NA 1E6JP 2M8PA 2XXMA 3DS3A 3G28A 1EIAA 4M0IA 1EOQA 4PH1A 4U0BA 5HGLA 1D1DA 3H4EA 1BAJA 3DTJA 3H47A 3P05A 4PH0A 4COPA 5HGOA 4WYMA 2JO0A 3LRYA 1A8OA 3G26A 3DS2A 4U0DA 4XFYA 5HGNA 3DS4A 4U0AA 4XFXA 5JPAA 4COCA 3DS1A 2JYLA 2M8LA 3G21A 4QNBA 3MGEA 4U0FA 5I4TG 2XT1A 4U0CA 2ONTA 1A43A 2XV6A 1AUMA 3G1IA 4U0EA 3DS0A 5DCKA 2EIAA 4XROA
chains in the Genus database with same CATH superfamily
2FQ2A 4F37A 2MR7A 1YIJP 1KD1Q 1GPJA 2LL8A 2MF4A 2KG6A 1L0HA 1VQPP 3EJDA 1NQ4A 3DS4A 2QA4P 2DGYA 3MGEA 4BPGA 2OTLP 1W2BO 2KG9A 2PEKA 4R0MA 4H2XC 2KR5A 2K0DX 2MY5A 1IUQA 2L6EA 3NY7B 5BS2A 1D1DA 2KGAA 2BHVA 3G26A 5CZDB 1VQOP 4QNBA 1KLPA 2JGPA 1VQ5P 2FADA 7CEIA 2CG5B 1Z6MA 1YJWP 1X3OA 2VLPA 1BAJA 3H47A 3RG2A 4PXHB 3U43A 5HV8A 3G4SP 2ROQA 3CCMP 3G21A 4U0FA 1GXHA 2L4BA 3HZQA 3DS0A 1Q82Q 1M6NA 3G0VA 1QVFO 1M1KQ 4H2WC 2XZ1C 2FAEA 2PY8A 2M8NA 2GZGA 2KGCA 4NEOA 5HGLA 3CC7P 1ZMBA 2GZFA 2OTJP 2L22A 2LTEA 2GDXA 3B4QA 2N6YA 3EJEA 4CA3A 1ZNVA 1AUMA 3G71P 2JU1A 3GKLC 2BUOA 3G1GA 2E1MA 2EG5A 3E2DA 1E6JP 3G28A 1VQ7P 2KOOA 1M74A 3CPWO 5F2OA 2LIUA 1VQKP 2AFDA 4UHPB 3GZMA 2KOSA 3CMEP 1N8RQ 4GR2A 3CC4P 1Q81Q 2JU2A 2VLOA 1EMVA 1Q7YQ 2KGEA 2AFEA 1VQ8P 4GR6A 3P05A 3LMOA 2CNRA 1KQSO 4U0AA 1K73Q 4DG9A 4IZ6A 2FVEA 2FQ0A 3NTEA 1YJNP 3CE7A 3CCRP 4WYMA 1JJ2O 1A8OA 1MZ8A 2WPTA 3G6EP 2K94A 5I4TG 2MR8A 2KOQA 4QKOA 2KWLA 2N5IA 3H0DA 2X2BA 2M8PA 2XXMA 1RO2A 2JQ4A 2GZJA 3CCUP 1M90Q 5KP6B 1VQLP 2PENA 2FACA 4COCA 5EJDA 3OW2O 2GDWA 1Q86Q 3B5IA 1HY8A 2OARA 3CD6P 3CCVP 2CQ8A 3GZLA 2KODA 2FVAA 4U0BA 1EIAA 4PH0A 2JAZA 1RO0A 1S72P 2JB0A 3CC2P 2KG8A 2QNWA 1IMQA 5BS1A 2VLQA 3G1IA 1A43A 2N98A 2CGQA 2PEIA 2MD9A 1YJ9P 4XFZA 1CEIA 2N6ZA 1OR5A 3HYBA 2L0QA 4MRTC 2L9FA 1UJZA 2KOPA 4XFXA 2GDYA 3DS1A 3CXCO 2FHSC 2LKIA 1F80D 3CMAP 2P9XA 1VHNA 2LOLA 1K8AQ 1M6EX 2JBGA 3WBHA 3G29A 5F2KA 1YITP 5KP7B 2GZIA 2MVVA 2PNGA 3CCQP 5JPAA 1VQ9P 2M8LA 2AVAA 2FVFA 2K5XA 2LMLA 1AYIA 2XV6A 2VSQA 5F2NA 2NO8A 3M1MA 1BXIA 1YHQP 2JYGA 3VRLC 3DS3A 2Z44A 2ERHA 2K93A 1VQ6P 3CCSP 4U0DA 4XFYA 1GXGA 2JYLA 2XT1A 4U0CA 1HQBA 4XRQA 2CWOA 2LF4A 2EFJA 1UNKA 2LIWA 4IPYA 1QRJA 1YI2P 3GJNA 1EOQA 1IMPA 3DTJA 5HGOA 3LRYA 1AF8A 2PEQA 4BPFA 2PEOA 2PEMA 1VQMP 1DNYA 3CCJP 2MVUA 2K0YA 2N5HA 5HVCA 2M5RA 1K9MQ 3DS5A 2KGDA 1RNIA 3RG6C 4PH1A 3CCEP 3Q20A 1E0HA 3H4EA 1DV5A 4H2YC 2KW2A 1VQ4P 2FQ1A 4U0EA 2EHSA 1NJIQ 2EIAA 1VKUA 2N50A 3DPHA 5HGMA 1QVGO 2PEJA 3CCLP 1ACPA 4M0IA 2Z46A 1K30A 3EJBA 4PWVB 5KP8B 1KC8Q 5HGNA 1T8KA 3I55P 3I56P 2GZEA 2EHTA 2ONTA 4XROA 2XZ0D 1VQNP 2AF8A 2K92A 4BPHA 2DNWA 1FR2A 2K0XA 2LPKA 2Z45A 4COPA 2GYKA 2K2QA 2JO0A 2VLNA 3DS2A 5EW5E 2KORA 4HKGA 1L0IA 5DCKA 2QEXP
chains in the Genus database with same CATH topology
3B5IA 2OARA 3CD6P 3CCVP 4XRQA 2BUOA 2CWOA 3G1GA 2LF4A 2EFJA 4IPYA 1QRJA 1YI2P 2E1MA 2EG5A 2KODA 1YIJP 3E2DA 1KD1Q 1E6JP 4U0BA 3G28A 1VQ7P 1EIAA 1EOQA 4PH0A 3DTJA 1M74A 5HGOA 1VQPP 1RO0A 3LRYA 3CPWO 5F2OA 1S72P 3DS4A 2QA4P 2PEQA 3CC2P 2DGYA 2PEOA 2PEMA 3MGEA 5BS1A 1VQKP 2OTLP 3G1IA 1A43A 1VQMP 1W2BO 2PEKA 2PEIA 3CCJP 3CMEP 1N8RQ 1YJ9P 4GR2A 3CC4P 1IUQA 1Q81Q 2L6EA 1Q7YQ 1K9MQ 3DS5A 4XFZA 1RNIA 5BS2A 1VQ8P 3RG6C 1D1DA 4PH1A 3HYBA 3Q20A 3CCEP 3H4EA 4GR6A 3P05A 2BHVA 1KQSO 3G26A 4U0AA 4XFXA 1VQ4P 3DS1A 3CXCO 1VQOP 4QNBA 1K73Q 4U0EA 1NJIQ 2EIAA 3CMAP 1VQ5P 2P9XA 1K8AQ 1M6EX 1YJWP 3DPHA 5HGMA 3WBHA 3NTEA 1YJNP 1QVGO 2PEJA 3G29A 5F2KA 3CCLP 4M0IA 1YITP 3CCRP 1BAJA 3H47A 2Z46A 4WYMA 1K30A 1JJ2O 1A8OA 3G4SP 1KC8Q 3CCQP 5HGNA 3G6EP 3I55P 3I56P 3CCMP 5JPAA 1VQ9P 2M8LA 3G21A 4U0FA 5I4TG 2ONTA 2XV6A 3HZQA 3DS0A 1Q82Q 4XROA 1M6NA 3G0VA 1QVFO 1M1KQ 1VQNP 5F2NA 3M1MA 1YHQP 2JYGA 2PY8A 3VRLC 3H0DA 2M8NA 2Z44A 2M8PA 2XXMA 3DS3A 1RO2A 5HGLA 3CCUP 3CC7P 1VQ6P 2Z45A 4COPA 1ZMBA 3CCSP 1M90Q 2OTJP 2JO0A 3DS2A 4U0DA 4XFYA 1VQLP 2PENA 4COCA 2JYLA 2XT1A 4U0CA 1AUMA 3G71P 5DCKA 3OW2O 2QEXP 1Q86Q
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3G0V A;  4XRQ A;  2BUO A;  3DPH A;  3G1G A;  5HGM A;  2LF4 A;  3NTE A;  4IPY A;  1QRJ A;  2KOD A;  2JYG A;  2L6E A;  3G29 A;  3DS5 A;  3VRL C;  4XFZ A;  2M8N A;  1E6J P;  2M8P A;  2XXM A;  3DS3 A;  3G28 A;  1EIA A;  4M0I A;  1EOQ A;  4PH1 A;  4U0B A;  5HGL A;  1D1D A;  3H4E A;  1BAJ A;  3DTJ A;  3H47 A;  3P05 A;  4PH0 A;  4COP A;  5HGO A;  4WYM A;  2JO0 A;  3LRY A;  1A8O A;  3G26 A;  3DS2 A;  4U0D A;  4XFY A;  5HGN A;  3DS4 A;  4U0A A;  4XFX A;  5JPA A;  4COC A;  3DS1 A;  2JYL A;  2M8L A;  3G21 A;  4QNB A;  3MGE A;  4U0F A;  5I4T G;  2XT1 A;  4U0C A;  2ONT A;  1A43 A;  2XV6 A;  1AUM A;  3G1I A;  4U0E A;  3DS0 A;  5DCK A;  2EIA A;  4XRO A; 
#chains in the Genus database with same CATH topology
 2FQ2 A;  4F37 A;  2MR7 A;  1YIJ P;  1KD1 Q;  1GPJ A;  2LL8 A;  2MF4 A;  2KG6 A;  1L0H A;  1VQP P;  3EJD A;  1NQ4 A;  3DS4 A;  2QA4 P;  2DGY A;  3MGE A;  4BPG A;  2OTL P;  1W2B O;  2KG9 A;  2PEK A;  4R0M A;  4H2X C;  2KR5 A;  2K0D X;  2MY5 A;  1IUQ A;  2L6E A;  3NY7 B;  5BS2 A;  1D1D A;  2KGA A;  2BHV A;  3G26 A;  5CZD B;  1VQO P;  4QNB A;  1KLP A;  2JGP A;  1VQ5 P;  2FAD A;  7CEI A;  2CG5 B;  1Z6M A;  1YJW P;  1X3O A;  2VLP A;  1BAJ A;  3H47 A;  3RG2 A;  4PXH B;  3U43 A;  5HV8 A;  3G4S P;  2ROQ A;  3CCM P;  3G21 A;  4U0F A;  1GXH A;  2L4B A;  3HZQ A;  3DS0 A;  1Q82 Q;  1M6N A;  3G0V A;  1QVF O;  1M1K Q;  4H2W C;  2XZ1 C;  2FAE A;  2PY8 A;  2M8N A;  2GZG A;  2KGC A;  4NEO A;  5HGL A;  3CC7 P;  1ZMB A;  2GZF A;  2OTJ P;  2L22 A;  2LTE A;  2GDX A;  3B4Q A;  2N6Y A;  3EJE A;  4CA3 A;  1ZNV A;  1AUM A;  3G71 P;  2JU1 A;  3GKL C;  2BUO A;  3G1G A;  2E1M A;  2EG5 A;  3E2D A;  1E6J P;  3G28 A;  1VQ7 P;  2KOO A;  1M74 A;  3CPW O;  5F2O A;  2LIU A;  1VQK P;  2AFD A;  4UHP B;  3GZM A;  2KOS A;  3CME P;  1N8R Q;  4GR2 A;  3CC4 P;  1Q81 Q;  2JU2 A;  2VLO A;  1EMV A;  1Q7Y Q;  2KGE A;  2AFE A;  1VQ8 P;  4GR6 A;  3P05 A;  3LMO A;  2CNR A;  1KQS O;  4U0A A;  1K73 Q;  4DG9 A;  4IZ6 A;  2FVE A;  2FQ0 A;  3NTE A;  1YJN P;  3CE7 A;  3CCR P;  4WYM A;  1JJ2 O;  1A8O A;  1MZ8 A;  2WPT A;  3G6E P;  2K94 A;  5I4T G;  2MR8 A;  2KOQ A;  4QKO A;  2KWL A;  2N5I A;  3H0D A;  2X2B A;  2M8P A;  2XXM A;  1RO2 A;  2JQ4 A;  2GZJ A;  3CCU P;  1M90 Q;  5KP6 B;  1VQL P;  2PEN A;  2FAC A;  4COC A;  5EJD A;  3OW2 O;  2GDW A;  1Q86 Q;  3B5I A;  1HY8 A;  2OAR A;  3CD6 P;  3CCV P;  2CQ8 A;  3GZL A;  2KOD A;  2FVA A;  4U0B A;  1EIA A;  4PH0 A;  2JAZ A;  1RO0 A;  1S72 P;  2JB0 A;  3CC2 P;  2KG8 A;  2QNW A;  1IMQ A;  5BS1 A;  2VLQ A;  3G1I A;  1A43 A;  2N98 A;  2CGQ A;  2PEI A;  2MD9 A;  1YJ9 P;  4XFZ A;  1CEI A;  2N6Z A;  1OR5 A;  3HYB A;  2L0Q A;  4MRT C;  2L9F A;  1UJZ A;  2KOP A;  4XFX A;  2GDY A;  3DS1 A;  3CXC O;  2FHS C;  2LKI A;  1F80 D;  3CMA P;  2P9X A;  1VHN A;  2LOL A;  1K8A Q;  1M6E X;  2JBG A;  3WBH A;  3G29 A;  5F2K A;  1YIT P;  5KP7 B;  2GZI A;  2MVV A;  2PNG A;  3CCQ P;  5JPA A;  1VQ9 P;  2M8L A;  2AVA A;  2FVF A;  2K5X A;  2LML A;  1AYI A;  2XV6 A;  2VSQ A;  5F2N A;  2NO8 A;  3M1M A;  1BXI A;  1YHQ P;  2JYG A;  3VRL C;  3DS3 A;  2Z44 A;  2ERH A;  2K93 A;  1VQ6 P;  3CCS P;  4U0D A;  4XFY A;  1GXG A;  2JYL A;  2XT1 A;  4U0C A;  1HQB A;  4XRQ A;  2CWO A;  2LF4 A;  2EFJ A;  1UNK A;  2LIW A;  4IPY A;  1QRJ A;  1YI2 P;  3GJN A;  1EOQ A;  1IMP A;  3DTJ A;  5HGO A;  3LRY A;  1AF8 A;  2PEQ A;  4BPF A;  2PEO A;  2PEM A;  1VQM P;  1DNY A;  3CCJ P;  2MVU A;  2K0Y A;  2N5H A;  5HVC A;  2M5R A;  1K9M Q;  3DS5 A;  2KGD A;  1RNI A;  3RG6 C;  4PH1 A;  3CCE P;  3Q20 A;  1E0H A;  3H4E A;  1DV5 A;  4H2Y C;  2KW2 A;  1VQ4 P;  2FQ1 A;  4U0E A;  2EHS A;  1NJI Q;  2EIA A;  1VKU A;  2N50 A;  3DPH A;  5HGM A;  1QVG O;  2PEJ A;  3CCL P;  1ACP A;  4M0I A;  2Z46 A;  1K30 A;  3EJB A;  4PWV B;  5KP8 B;  1KC8 Q;  5HGN A;  1T8K A;  3I55 P;  3I56 P;  2GZE A;  2EHT A;  2ONT A;  4XRO A;  2XZ0 D;  1VQN P;  2AF8 A;  2K92 A;  4BPH A;  2DNW A;  1FR2 A;  2K0X A;  2LPK A;  2Z45 A;  4COP A;  2GYK A;  2K2Q A;  2JO0 A;  2VLN A;  3DS2 A;  5EW5 E;  2KOR A;  4HKG A;  1L0I A;  5DCK A;  2QEX P; 
#chains in the Genus database with same CATH homology
 3B5I A;  2OAR A;  3CD6 P;  3CCV P;  4XRQ A;  2BUO A;  2CWO A;  3G1G A;  2LF4 A;  2EFJ A;  4IPY A;  1QRJ A;  1YI2 P;  2E1M A;  2EG5 A;  2KOD A;  1YIJ P;  3E2D A;  1KD1 Q;  1E6J P;  4U0B A;  3G28 A;  1VQ7 P;  1EIA A;  1EOQ A;  4PH0 A;  3DTJ A;  1M74 A;  5HGO A;  1VQP P;  1RO0 A;  3LRY A;  3CPW O;  5F2O A;  1S72 P;  3DS4 A;  2QA4 P;  2PEQ A;  3CC2 P;  2DGY A;  2PEO A;  2PEM A;  3MGE A;  5BS1 A;  1VQK P;  2OTL P;  3G1I A;  1A43 A;  1VQM P;  1W2B O;  2PEK A;  2PEI A;  3CCJ P;  3CME P;  1N8R Q;  1YJ9 P;  4GR2 A;  3CC4 P;  1IUQ A;  1Q81 Q;  2L6E A;  1Q7Y Q;  1K9M Q;  3DS5 A;  4XFZ A;  1RNI A;  5BS2 A;  1VQ8 P;  3RG6 C;  1D1D A;  4PH1 A;  3HYB A;  3Q20 A;  3CCE P;  3H4E A;  4GR6 A;  3P05 A;  2BHV A;  1KQS O;  3G26 A;  4U0A A;  4XFX A;  1VQ4 P;  3DS1 A;  3CXC O;  1VQO P;  4QNB A;  1K73 Q;  4U0E A;  1NJI Q;  2EIA A;  3CMA P;  1VQ5 P;  2P9X A;  1K8A Q;  1M6E X;  1YJW P;  3DPH A;  5HGM A;  3WBH A;  3NTE A;  1YJN P;  1QVG O;  2PEJ A;  3G29 A;  5F2K A;  3CCL P;  4M0I A;  1YIT P;  3CCR P;  1BAJ A;  3H47 A;  2Z46 A;  4WYM A;  1K30 A;  1JJ2 O;  1A8O A;  3G4S P;  1KC8 Q;  3CCQ P;  5HGN A;  3G6E P;  3I55 P;  3I56 P;  3CCM P;  5JPA A;  1VQ9 P;  2M8L A;  3G21 A;  4U0F A;  5I4T G;  2ONT A;  2XV6 A;  3HZQ A;  3DS0 A;  1Q82 Q;  4XRO A;  1M6N A;  3G0V A;  1QVF O;  1M1K Q;  1VQN P;  5F2N A;  3M1M A;  1YHQ P;  2JYG A;  2PY8 A;  3VRL C;  3H0D A;  2M8N A;  2Z44 A;  2M8P A;  2XXM A;  3DS3 A;  1RO2 A;  5HGL A;  3CCU P;  3CC7 P;  1VQ6 P;  2Z45 A;  4COP A;  1ZMB A;  3CCS P;  1M90 Q;  2OTJ P;  2JO0 A;  3DS2 A;  4U0D A;  4XFY A;  1VQL P;  2PEN A;  4COC A;  2JYL A;  2XT1 A;  4U0C A;  1AUM A;  3G71 P;  5DCK A;  3OW2 O;  2QEX P;  1Q86 Q; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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