The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
24
|
sequence length |
86
|
structure length |
86
|
Chain Sequence |
TPVRIYTNAEELVGKPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYRQAVCIGSALNIT
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Membrane protein
|
| molecule keywords |
PUTATIVE OUTER MEMBRANE PROTEIN, SIGNAL
|
| publication title |
Crystal Structure of the Outer Membrane Protein Rcsf, a New Substrate for the Periplasmic Protein- Disulfide Isomerase Dsbc.
pubmed doi rcsb |
| source organism |
Escherichia coli
|
| total genus |
24
|
| structure length |
86
|
| sequence length |
86
|
| ec nomenclature | |
| pdb deposition date | 2010-12-07 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF16358 | RcsF | RcsF lipoprotein |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Translation Initiation Factor IF3 | Hypothetical protein apc22750. Chain B |
#chains in the Genus database with same CATH superfamily 2GTC A; 2L8Y A; 3QKB A; 1VR4 A; 1Y2I A; 2Y1B A; #chains in the Genus database with same CATH topology 1NJ6 A; 4YKE A; 3VTH A; 2P9B A; 2GTC A; 2L8Y A; 4Z9E A; 1H4Q A; 2LN3 A; 4HD0 A; 3IAB B; 3ZIG A; 1TIG A; 4HVZ A; 3VTI A; 3WBM A; 4Q15 A; 4FCX A; 2LXR A; 1Y2I A; 4FBK A; 2EH1 A; 4NZR M; 1JO0 A; 4HVC A; 4K86 A; 1JE3 A; 1DCJ A; 1PAV A; 4EO0 A; 3U6Y A; 1Y9X A; 1NFJ A; 3QKB A; 1NJ1 A; 1VR4 A; 3TTC A; 3P04 A; 2H9U A; 2Q3V A; 3ZIH A; 2IFE A; 4NCX A; 1VM0 A; 1LN4 A; 1NJ2 A; 2A2Y A; 3TOE A; 3ZII A; 3IAL A; 1H0Y A; 1II7 A; 3DSC A; 1JDQ A; 1NH9 A; 3T1I A; 4OLF A; 2Z7C A; 1XEZ A; 3HZ7 A; 3IAB A; 1H0X A; 1NFH A; 1H4T A; 1NJ5 A; 4YDQ A; 1S8E A; 1HC7 A; 1UDV A; 3TSU A; 3DSD A; 4TWA A; 4K87 A; 1RQ8 A; 2EK0 A; 3TSP A; 1H4S A; 3TTD A; 3TSQ A; 2Y1B A; 4K88 A; 2M71 A; 4FBQ A; 3LVK B; 2CRQ A; 3ZIE A; 4NZT M; 2BKY X; 4FBW A; 3LVJ C; 4WI1 A; 3TTF A; 1NJ8 A; #chains in the Genus database with same CATH homology 2GTC A; 2L8Y A; 3QKB A; 1VR4 A; 1Y2I A; 2Y1B A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
