2YFBA

X-ray structure of mcps ligand binding domain in complex with succinate
Total Genus 115
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
115
sequence length
235
structure length
235
Chain Sequence
GSHMGDIGQLNKDLTDLRIARLQYMIANGDDTAAANTLAKLDAFSKQQAYLATTFKSPENVKLLGELGDTISAYKLSLNKMRQGYDATRAARVSMDSSAIRADQAMDALSQEVMARPEADSVRLAQYQLISKARQQLLQVRIDVRGYIAENSSANEQAALRQLDAALADTDNLKRQLPSEDARLQQFENAVLAYRDAVRQFRDAVANITTSRAEMTVQGADIVKRSDALYQIQLE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Receptor
molecule keywords METHYL-ACCEPTING CHEMOTAXIS TRANSDUCER
publication title Evidence for Chemoreceptors with Bimodular Ligand-Binding Regions Harboring Two Signal-Binding Sites.
pubmed doi rcsb
source organism Pseudomonas putida
total genus 115
structure length 235
sequence length 235
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-04-05
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1440.210 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) de novo design (two linked rop proteins) 2yfbA01
1.20.1440.210 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) de novo design (two linked rop proteins) 2yfbA02
2YFAA 2YFBA 3VA9A
chains in the Genus database with same CATH superfamily
2P22B 3P23A 2FUG1 2YFAA 2RLDA 2JB3A 2JB2A 1TDPA 1SJ8A 3FVVA 4NV2A 2ZW3A 4G76A 2K19A 3IAS1 3B55A 2YFBA 3LJ1A 3FNBA 4I1TA 3IAM1 2IP6A 3UITA 1W3SA 4O1OA 3FBVA 4GXTA 5HGIA 2RIOA 2BL7A 3DA3A 4OAVB 2A2CA 2HGKA 2V1CC 4AS3A 4YZ9A 2XMXA 2XTRA 4PL3A 4PL4A 2JBWA 4Z7GA 2KKMA 4NV5A 4YZDA 3I9V1 3DA4A 4HEA1 2QZGA 2RADA 2GSCA 2JB1A 2FU2A 2QSBA 2MJFB 4OAUC 4YZCA 3SDJA 3KP9A 3JSBA 1YO7A 3F4MA 4O1PA 3DO9A 2E8GA 2ETDA 3LJ0A 5LNK1 3VA9A 4AS2A 3L0IA 4G75A 2JAEA 3Q8DA 2XTQA 2CAZB 2F66B 2QGMA 4JCVE 4DWLA 1U5KA 2A2DA 2FEFA 4Q9VA 2BL8A 4Z7HA 1JQOA 4HFVA 2ZRRA 2F6MB 4U6RA 2L1LB 2V6EA 3AJFA 3LJ2A 4PL5A
chains in the Genus database with same CATH topology
2P22B 3P23A 2FUG1 2YFAA 2JB3A 2JB2A 1SJ8A 4NV2A 4G76A 2K19A 3IAS1 2YFBA 3LJ1A 4I1TA 3IAM1 2IP6A 3UITA 1W3SA 4O1OA 3FBVA 4GXTA 5HGIA 2RIOA 3DA3A 4OAVB 2A2CA 2V1CC 4AS3A 4YZ9A 2XMXA 2XTRA 4PL3A 4PL4A 4Z7GA 2KKMA 4NV5A 4YZDA 3I9V1 3DA4A 4HEA1 2JB1A 2MJFB 4OAUC 4YZCA 3SDJA 3KP9A 3JSBA 1YO7A 3F4MA 4O1PA 3DO9A 2E8GA 3LJ0A 5LNK1 3VA9A 4AS2A 3L0IA 4G75A 2JAEA 3Q8DA 2XTQA 2CAZB 2F66B 4JCVE 4DWLA 1U5KA 2A2DA 4Q9VA 4Z7HA 4HFVA 2ZRRA 2F6MB 4U6RA 2L1LB 2V6EA 3AJFA 3LJ2A 4PL5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2YFA A;  2YFB A;  3VA9 A; 
#chains in the Genus database with same CATH topology
 2P22 B;  3P23 A;  2FUG 1;  2YFA A;  2RLD A;  2JB3 A;  2JB2 A;  1TDP A;  1SJ8 A;  3FVV A;  4NV2 A;  2ZW3 A;  4G76 A;  2K19 A;  3IAS 1;  3B55 A;  2YFB A;  3LJ1 A;  3FNB A;  4I1T A;  3IAM 1;  2IP6 A;  3UIT A;  1W3S A;  4O1O A;  3FBV A;  4GXT A;  5HGI A;  2RIO A;  2BL7 A;  3DA3 A;  4OAV B;  2A2C A;  2HGK A;  2V1C C;  4AS3 A;  4YZ9 A;  2XMX A;  2XTR A;  4PL3 A;  4PL4 A;  2JBW A;  4Z7G A;  2KKM A;  4NV5 A;  4YZD A;  3I9V 1;  3DA4 A;  4HEA 1;  2QZG A;  2RAD A;  2GSC A;  2JB1 A;  2FU2 A;  2QSB A;  2MJF B;  4OAU C;  4YZC A;  3SDJ A;  3KP9 A;  3JSB A;  1YO7 A;  3F4M A;  4O1P A;  3DO9 A;  2E8G A;  2ETD A;  3LJ0 A;  5LNK 1;  3VA9 A;  4AS2 A;  3L0I A;  4G75 A;  2JAE A;  3Q8D A;  2XTQ A;  2CAZ B;  2F66 B;  2QGM A;  4JCV E;  4DWL A;  1U5K A;  2A2D A;  2FEF A;  4Q9V A;  2BL8 A;  4Z7H A;  1JQO A;  4HFV A;  2ZRR A;  2F6M B;  4U6R A;  2L1L B;  2V6E A;  3AJF A;  3LJ2 A;  4PL5 A; 
#chains in the Genus database with same CATH homology
 2P22 B;  3P23 A;  2FUG 1;  2YFA A;  2JB3 A;  2JB2 A;  1SJ8 A;  4NV2 A;  4G76 A;  2K19 A;  3IAS 1;  2YFB A;  3LJ1 A;  4I1T A;  3IAM 1;  2IP6 A;  3UIT A;  1W3S A;  4O1O A;  3FBV A;  4GXT A;  5HGI A;  2RIO A;  3DA3 A;  4OAV B;  2A2C A;  2V1C C;  4AS3 A;  4YZ9 A;  2XMX A;  2XTR A;  4PL3 A;  4PL4 A;  4Z7G A;  2KKM A;  4NV5 A;  4YZD A;  3I9V 1;  3DA4 A;  4HEA 1;  2JB1 A;  2MJF B;  4OAU C;  4YZC A;  3SDJ A;  3KP9 A;  3JSB A;  1YO7 A;  3F4M A;  4O1P A;  3DO9 A;  2E8G A;  3LJ0 A;  5LNK 1;  3VA9 A;  4AS2 A;  3L0I A;  4G75 A;  2JAE A;  3Q8D A;  2XTQ A;  2CAZ B;  2F66 B;  4JCV E;  4DWL A;  1U5K A;  2A2D A;  4Q9V A;  4Z7H A;  4HFV A;  2ZRR A;  2F6M B;  4U6R A;  2L1L B;  2V6E A;  3AJF A;  3LJ2 A;  4PL5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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