2Z0NA

Crystal structure of appl1-bar domain
Total Genus 94
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
94
sequence length
243
structure length
235
Chain Sequence
LEDSPQTRSLLGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQEVMSSTLQQFSKVIDELSSCHAVLSTQLADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAINRYSRLSKKRENDKVKYEVTEDVYTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENLNEQLEEFLANIGTSVQNVRREMDSDIETMQQTIEDLE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein
molecule keywords DCC-interacting protein 13-alpha
publication title Crystal structure of APPL1-BAR domain
rcsb
source organism Homo sapiens
total genus 94
structure length 235
sequence length 243
ec nomenclature
pdb deposition date 2007-05-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16746 BAR_3 BAR domain of APPL family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.60 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Arfaptin homology (AH) domain/BAR domain 2z0nA00
2X3XA 4I1QA 2V0OA 2C08A 2ELBA 3I2WA 4BNEA 3QE6A 4FZSA 2EFKA 3QWEA 1X03A 3DYTA 2Q12A 2FICA 3PLTA 4NSWA 3G9GA 1I4DA 1URUA 1WDZA 3CAZA 4AKVA 3LLLA 5C5BA 3QNIA 2X3WA 4WPEA 2YKTA 3Q0KA 3SYVA 3SOGA 5C5BB 2Z0NA 1ZWWA 2D1LA 2D4CA 3HAJA 2RAIA 3HAHA 2X3VA 2Z0VA 3HAIA 1Y2OA 3OK8A 1I4LA 3ABHA 3Q84A 4H8SA 4NQIA 4DYLA 4ATMA 4AVMA 2Q13A 1I4TA 2RAJA 2Z0OA 4WPCA 3M3WA 2EFLA 3ACOA 1X04A 4DCNC 1I49A 2RAKA
chains in the Genus database with same CATH superfamily
1W9MA 4JWIA 3I2WA 3D4YA 3RPMA 3O3OB 2FICA 2PMRA 1Y2OA 3FD9A 1TQWA 3RV0A 4EZUA 2LXYA 2YL6A 3M3WA 2RAKA 3DPPA 3GI7A 3KAVA 1GNLA 3BUIA 1WDZA 3I39X 2F7QA 2GA9D 3SYVA 2Z8YA 3BVXA 2D4CA 4HY9A 4DYLA 2QKWA 2OBLA 4WPCA 1SU7A 1PS3A 3A98A 3B53X 4JWEA 1E1DA 1ZYLA 1R5EA 4EZWA 4HR1B 4AZBA 3D50A 4AVMA 3D2EA 2PY6A 1U00A 1E9VA 4B9QA 3EJPA 2ELBA 2O0I1 3VEBA 3KAWA 3OHXM 3B52X 1DKYA 3DPOA 3T48A 1OA0A 3Q84A 2YL9A 4H8SA 1TQTA 3KDRA 3DX0A 1UPXA 3L3OM 3DDGA 4AZGA 2MI7A 2JNKA 2WYHA 2OW7A 2F1BA 3LMFA 1URUA 4EZVA 4FZPA 2F18A 2X5CA 2RAJA 4AZIA 4F00A 3I01A 3BUBA 3D4ZA 1O7DC 1MJGA 1X03A 4R5LA 2OZNB 3BVUA 3T47A 1QWNA 5TKYA 4UDYX 1ZWWA 4NQIA 3ER9B 3VEAA 4FM3A 2ND0A 2YL5A 2EFLA 5FIGA 4H6IA 4EZYA 1X04A 4NPHA 1QWUA 3QNJA 3PLTA 4G6QA 3LLLA 2F7PA 3SOGA 3HAHA 2Z0VA 1DKXA 2WYIA 4IWQA 3ZEDA 1I49A 3QE6A 4R5GA 1GNTA 3ER8C 4IM2A 4KIKA 2YLAA 3HAJA 4AZCB 1YWMA 3RV1A 4IM0A 3D2FA 2X3XA 5FLEX 2NCZA 2YIAA 3DX1A 4JNFA 3DX4A 1SU6A 2RT6A 1JQKA 4EZRA 4NSWA 3G9GA 4JNEA 3Q0KA 4UDXX 3EJQA 2RAIA 3EJTA 4ATMA 3CVRA 2YIVX 3CZSA 2WINM 4I1QA 4AZHA 2V0OA 1TQUA 4AZ7A 4JL9A 2F7OA 3B51X 3EJRA 4EZPA 1TQSA 2YLLA 4F01A 1GN9A 1LQ7A 4AKVA 3CV5A 4WPEA 4FZOA 4JN4A 4AZCA 2YI8A 4E3CA 3ABHA 3BUPA 3DDFA 4IWOA 2GF4A 3QA8A 4FZSA 2Q12A 3OWGA 4R5KA 3QNIA 2EWFA 2OW6A 3DPQA 4KIKB 2Z0NA 3BUDA 2YIBA 1HXKA 1O7DB 3T49A 3BVWA 1OA1A 4R5IA 3LVTA 3QWEA 1QX1A 4IWPA 4EZXA 4H6HA 1I4DA 4EZQA 2YI9A 1HWWA 3HAIA 3EJSA 3VKHA 2OBMA 2JNSA 4PO2A 4BNEA 4E81A 1R33A 3DX2A 2ZXQA 2LM0A 1R34A 5C5BB 3F7WA 1I4LA 2N3KA 2Z0OA 4EZOA 3O3NB 2ND1A 2F7RA 2QFFA 4IM3A 2GAFD 3BLBA 3CZNA 4IW0A 4EZNA 3L3PA 2ALWA 5KBPA 2OO2A 3CAZA 3EJUA 3ERCC 2YKTA 1E2UA 2D1LA 3CKDA 4R5JA 1I4TA 2FYVA 3D52A 3BVVA 2EFKA 4EZTA 3DYTA 2EX3B 2YL8A 5C5BA 2X3WA 2KHOA 4EZSA 4JLCA 3BVTA 3C7NA 3OK8A 3O3MB 3T4AG 1SUFA 2Q13A 4AZ5A 1OAOA 2QXLA 1HTYA 4DCNC 4EZZA 5E84A 2C08A 3D51A 4M0MA 1SU8A 4JWCA 4HR1A 3BUQA 3T46A 3UITA 4D8JA 2X3VA 4HYBA 2F1AA 1DKZA 4AZ6A 4JWDA 3DX3A 3I04A 3ACOA 1TQVA
chains in the Genus database with same CATH topology
2X3XA 4I1QA 2V0OA 2C08A 2ELBA 3I2WA 4BNEA 3QE6A 4FZSA 2EFKA 3QWEA 1X03A 3DYTA 2Q12A 2FICA 3PLTA 4NSWA 3G9GA 1I4DA 1URUA 1WDZA 3CAZA 4AKVA 3LLLA 5C5BA 3QNIA 2X3WA 4WPEA 2YKTA 3Q0KA 3SYVA 3SOGA 5C5BB 2Z0NA 1ZWWA 2D1LA 2D4CA 3HAJA 2RAIA 3HAHA 2X3VA 2Z0VA 3HAIA 1Y2OA 3OK8A 1I4LA 3ABHA 3Q84A 4H8SA 4NQIA 4DYLA 4ATMA 4AVMA 2Q13A 1I4TA 2RAJA 2Z0OA 4WPCA 3M3WA 2EFLA 3ACOA 1X04A 4DCNC 1I49A 2RAKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2X3X A;  4I1Q A;  2V0O A;  2C08 A;  2ELB A;  3I2W A;  4BNE A;  3QE6 A;  4FZS A;  2EFK A;  3QWE A;  1X03 A;  3DYT A;  2Q12 A;  2FIC A;  3PLT A;  4NSW A;  3G9G A;  1I4D A;  1URU A;  1WDZ A;  3CAZ A;  4AKV A;  3LLL A;  5C5B A;  3QNI A;  2X3W A;  4WPE A;  2YKT A;  3Q0K A;  3SYV A;  3SOG A;  5C5B B;  2Z0N A;  1ZWW A;  2D1L A;  2D4C A;  3HAJ A;  2RAI A;  3HAH A;  2X3V A;  2Z0V A;  3HAI A;  1Y2O A;  3OK8 A;  1I4L A;  3ABH A;  3Q84 A;  4H8S A;  4NQI A;  4DYL A;  4ATM A;  4AVM A;  2Q13 A;  1I4T A;  2RAJ A;  2Z0O A;  4WPC A;  3M3W A;  2EFL A;  3ACO A;  1X04 A;  4DCN C;  1I49 A;  2RAK A; 
#chains in the Genus database with same CATH topology
 1W9M A;  4JWI A;  3I2W A;  3D4Y A;  3RPM A;  3O3O B;  2FIC A;  2PMR A;  1Y2O A;  3FD9 A;  1TQW A;  3RV0 A;  4EZU A;  2LXY A;  2YL6 A;  3M3W A;  2RAK A;  3DPP A;  3GI7 A;  3KAV A;  1GNL A;  3BUI A;  1WDZ A;  3I39 X;  2F7Q A;  2GA9 D;  3SYV A;  2Z8Y A;  3BVX A;  2D4C A;  4HY9 A;  4DYL A;  2QKW A;  2OBL A;  4WPC A;  1SU7 A;  1PS3 A;  3A98 A;  3B53 X;  4JWE A;  1E1D A;  1ZYL A;  1R5E A;  4EZW A;  4HR1 B;  4AZB A;  3D50 A;  4AVM A;  3D2E A;  2PY6 A;  1U00 A;  1E9V A;  4B9Q A;  3EJP A;  2ELB A;  2O0I 1;  3VEB A;  3KAW A;  3OHX M;  3B52 X;  1DKY A;  3DPO A;  3T48 A;  1OA0 A;  3Q84 A;  2YL9 A;  4H8S A;  1TQT A;  3KDR A;  3DX0 A;  1UPX A;  3L3O M;  3DDG A;  4AZG A;  2MI7 A;  2JNK A;  2WYH A;  2OW7 A;  2F1B A;  3LMF A;  1URU A;  4EZV A;  4FZP A;  2F18 A;  2X5C A;  2RAJ A;  4AZI A;  4F00 A;  3I01 A;  3BUB A;  3D4Z A;  1O7D C;  1MJG A;  1X03 A;  4R5L A;  2OZN B;  3BVU A;  3T47 A;  1QWN A;  5TKY A;  4UDY X;  1ZWW A;  4NQI A;  3ER9 B;  3VEA A;  4FM3 A;  2ND0 A;  2YL5 A;  2EFL A;  5FIG A;  4H6I A;  4EZY A;  1X04 A;  4NPH A;  1QWU A;  3QNJ A;  3PLT A;  4G6Q A;  3LLL A;  2F7P A;  3SOG A;  3HAH A;  2Z0V A;  1DKX A;  2WYI A;  4IWQ A;  3ZED A;  1I49 A;  3QE6 A;  4R5G A;  1GNT A;  3ER8 C;  4IM2 A;  4KIK A;  2YLA A;  3HAJ A;  4AZC B;  1YWM A;  3RV1 A;  4IM0 A;  3D2F A;  2X3X A;  5FLE X;  2NCZ A;  2YIA A;  3DX1 A;  4JNF A;  3DX4 A;  1SU6 A;  2RT6 A;  1JQK A;  4EZR A;  4NSW A;  3G9G A;  4JNE A;  3Q0K A;  4UDX X;  3EJQ A;  2RAI A;  3EJT A;  4ATM A;  3CVR A;  2YIV X;  3CZS A;  2WIN M;  4I1Q A;  4AZH A;  2V0O A;  1TQU A;  4AZ7 A;  4JL9 A;  2F7O A;  3B51 X;  3EJR A;  4EZP A;  1TQS A;  2YLL A;  4F01 A;  1GN9 A;  1LQ7 A;  4AKV A;  3CV5 A;  4WPE A;  4FZO A;  4JN4 A;  4AZC A;  2YI8 A;  4E3C A;  3ABH A;  3BUP A;  3DDF A;  4IWO A;  2GF4 A;  3QA8 A;  4FZS A;  2Q12 A;  3OWG A;  4R5K A;  3QNI A;  2EWF A;  2OW6 A;  3DPQ A;  4KIK B;  2Z0N A;  3BUD A;  2YIB A;  1HXK A;  1O7D B;  3T49 A;  3BVW A;  1OA1 A;  4R5I A;  3LVT A;  3QWE A;  1QX1 A;  4IWP A;  4EZX A;  4H6H A;  1I4D A;  4EZQ A;  2YI9 A;  1HWW A;  3HAI A;  3EJS A;  3VKH A;  2OBM A;  2JNS A;  4PO2 A;  4BNE A;  4E81 A;  1R33 A;  3DX2 A;  2ZXQ A;  2LM0 A;  1R34 A;  5C5B B;  3F7W A;  1I4L A;  2N3K A;  2Z0O A;  4EZO A;  3O3N B;  2ND1 A;  2F7R A;  2QFF A;  4IM3 A;  2GAF D;  3BLB A;  3CZN A;  4IW0 A;  4EZN A;  3L3P A;  2ALW A;  5KBP A;  2OO2 A;  3CAZ A;  3EJU A;  3ERC C;  2YKT A;  1E2U A;  2D1L A;  3CKD A;  4R5J A;  1I4T A;  2FYV A;  3D52 A;  3BVV A;  2EFK A;  4EZT A;  3DYT A;  2EX3 B;  2YL8 A;  5C5B A;  2X3W A;  2KHO A;  4EZS A;  4JLC A;  3BVT A;  3C7N A;  3OK8 A;  3O3M B;  3T4A G;  1SUF A;  2Q13 A;  4AZ5 A;  1OAO A;  2QXL A;  1HTY A;  4DCN C;  4EZZ A;  5E84 A;  2C08 A;  3D51 A;  4M0M A;  1SU8 A;  4JWC A;  4HR1 A;  3BUQ A;  3T46 A;  3UIT A;  4D8J A;  2X3V A;  4HYB A;  2F1A A;  1DKZ A;  4AZ6 A;  4JWD A;  3DX3 A;  3I04 A;  3ACO A;  1TQV A; 
#chains in the Genus database with same CATH homology
 2X3X A;  4I1Q A;  2V0O A;  2C08 A;  2ELB A;  3I2W A;  4BNE A;  3QE6 A;  4FZS A;  2EFK A;  3QWE A;  1X03 A;  3DYT A;  2Q12 A;  2FIC A;  3PLT A;  4NSW A;  3G9G A;  1I4D A;  1URU A;  1WDZ A;  3CAZ A;  4AKV A;  3LLL A;  5C5B A;  3QNI A;  2X3W A;  4WPE A;  2YKT A;  3Q0K A;  3SYV A;  3SOG A;  5C5B B;  2Z0N A;  1ZWW A;  2D1L A;  2D4C A;  3HAJ A;  2RAI A;  3HAH A;  2X3V A;  2Z0V A;  3HAI A;  1Y2O A;  3OK8 A;  1I4L A;  3ABH A;  3Q84 A;  4H8S A;  4NQI A;  4DYL A;  4ATM A;  4AVM A;  2Q13 A;  1I4T A;  2RAJ A;  2Z0O A;  4WPC A;  3M3W A;  2EFL A;  3ACO A;  1X04 A;  4DCN C;  1I49 A;  2RAK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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