2ZJPS

Thiopeptide antibiotic nosiheptide bound to the large ribosomal subunit of deinococcus radiodurans
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
175
structure length
175
Chain Sequence
MELTAKPRTPKQKLDESMIAAVAYNKENNVSFALDRKAFDRAFRQQSTTGLFDITVEGGETFPALVKAVQMDKRKRAPIHVDFYMVTYGEPVEVSVPVHTTGRSQGEVQGGLVDIVVHNLQIVAPGPRRIPQELVVDVTKMNIGDHITAGDIKLPEGCTLAADPELTVVSVLPPR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome/antibiotic
molecule keywords 50S RIBOSOMAL PROTEIN L33
publication title Translational Regulation Via L11: Molecular Switches on the Ribosome Turned on and Off by Thiostrepton and Micrococcin.
pubmed doi rcsb
total genus 15
structure length 175
sequence length 175
ec nomenclature
pdb deposition date 2008-03-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
S PF01386 Ribosomal_L25p Ribosomal L25p family
S PF14693 Ribosomal_TL5_C Ribosomal protein TL5, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 2zjpS01
2.170.120.20 Mainly Beta Beta Complex RNA Polymerase Alpha Subunit; Chain A, domain 2 Ribosomal protein L25, beta domain 2zjpS02
2RE8A 4JXZA 5GADW 5DM7S 1QRTA 1QRSA 4WFNS 1ZJWA 1QTQA 1DFUP 5JVHS 4WFBS 4IOCS 3AIIA 4H3SA 3DLLS 1GTSA 5GAHW 1QRUA 1EUQA 1B75A 2RD2A 3PIOS 1EXDA 2ZJQS 4U67S 4JYZA 5BNZA 4IOAS 5IZNA 1NYLA 3PIPS 1GTRA 4WCES 3J7ZV 5DM6S 1EUYA 4IO9S 4UY88 1O0BA 5GAGW 1FEUA 4P2BA 3CF5S 5HL7S 2ZJRS 1D6KA 2ZJPS 5JVGS 5GAEW 1O0CA 4WFAS 4JXXA 2HZ7A 4WF9S
chains in the Genus database with same CATH superfamily
3M4OC 2E2HC 4XLNA 4A3GC 1QRTA 2R7ZC 4H3SA 1GTSA 1QRUA 4LK0A 4C3JC 2KXYA 2YU9C 5C44C 2L5NA 4C3IC 3GTGC 4MQ9A 3GTMC 1ZYRA 4BY7C 3EQLA 4J3CA 2R93C 4MEXA 4BY1C 1EXDA 3GTKC 3H3VD 4YFXA 3PIPS 3RZOC 2PICA 4OIOA 4WCES 4A3EC 3CQZC 4Y52C 3FKIC 1I3QC 3HOZC 5DM6S 1EUYA 4IO9S 2NVYC 3HOVC 3M3YC 4A3JC 3KW2A 1K83C 4A3DC 4P2BA 2PPBA 4G7ZA 3CZBA 2NVXC 1SMYA 4BXXC 4LK1A 2KQ1A 5JVGS 3W2VB 4JXXA 2HZ7A 4WF9S 2PA8D 3GTQC 1VHKA 2E2IC 5DM7S 5HQHA 1QTQA 1BDFA 3HOYC 1DFUP 3S14C 3I4MC 4L69A 3DLLS 1NXZA 3S1MC 1EUQA 4X6AC 1TWFC 4ZH4A 2B63C 2NVTC 3HOUC 3S16C 1Z85A 2AE0X 5D4DA 4OIRA 5FLMC 2WAQD 1TWAC 4JK1A 4LLGA 4JYZA 2O5IA 4A3LC 2G6GA 4A3FC 5IP7C 3PO3C 2CW0A 2Y0SD 3S2DC 1SFOC 4YFKA 4A3KC 2PI8A 3GTLC 3W2WB 3GTOC 4UY88 4YFNA 3GTPC 5GAGW 4E8BA 4G7OA 1FEUA 1VHYA 2Z0YA 3HOXC 2JA6C 1I6HC 2EGVA 5C4XC 4WFAS 4H4KA 4NOIA 4AYBD 2RE8A 4Q4ZA 1TWHC 5GADW 2BE5A 2NVQC 4QJVA 4XSZA 1QRSA 1ZJWA 4KMUA 4BBSC 3I4NC 4IOCS 4A3CC 5GAHW 3S1QC 2CX8A 1I6VA 3WODA 3S1NC 1TWGC 2RD2A 1YNNA 5IYDC 3RZDC 4YG2A 4OINA 4G7HA 4V194 3X1LB 3S1RC 2PNWA 5BNZA 4IOAS 4BBRC 5TMFA 2G5DA 4MEYA 2O5JA 3J7ZV 1R9TC 2A69A 2E2JC 1O0BA 4C2MC 4C3HC 3PO2C 4KN7A 2PJJA 3CF5S 2VUMC 2ZJPS 1WCMC 1YNJA 3K7AC 4XLPA 3H0GC 5IYBC 2KPUA 1O0CA 2PMZD 1I50C 1UDXA 4JXZA 4OIPA 5TMCA 3S17C 5C4JC 1TWCC 4WFNS 2WB1D 4WFBS 3AIIA 2NWAA 1Y1WC 2A6HA 2JA7C 2JA8C 1B75A 5C3EC 4Y7NC 3PIOS 4A93C 2EGWA 5IYCC 4A3BC 5IP9C 2ZJQS 4U67S 2R92C 1Y1VC 3LYWA 3S15C 3GTJC 5IZNA 1NYLA 1GTRA 3DXJA 2A6EA 3HOWC 3HKZD 4A3IC 3S2HC 2L3UA 2GAEA 1V6ZA 2A68A 4QIWD 4XSXA 4GZYA 4A3MC 5HL7S 2ZJRS 4Q5SA 4LJZA 4OIQA 1IW7A 1HQMA 5GAEW 1D6KA 4KN4A 5JVHS 2JA5C
chains in the Genus database with same CATH topology
2RE8A 4JXZA 5GADW 5DM7S 1QRTA 1QRSA 4WFNS 1ZJWA 1QTQA 1DFUP 4JXXA 5JVHS 4WFBS 4IOCS 3AIIA 4H3SA 1UDXA 3DLLS 5GAHW 1GTSA 1QRUA 1EUQA 2HZ7A 1B75A 2RD2A 3PIOS 4V194 3X1LB 1EXDA 2ZJQS 4U67S 4JYZA 5BNZA 4IOAS 5IZNA 1NYLA 3PIPS 1GTRA 4WCES 3J7ZV 5DM6S 1EUYA 3W2WB 4IO9S 4UY88 1O0BA 5GAGW 1FEUA 4P2BA 3CF5S 5HL7S 2ZJRS 1D6KA 2ZJPS 5JVGS 5GAEW 1O0CA 4WFAS 3W2VB 4H4KA 4WF9S
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2RE8 A;  4JXZ A;  5GAD W;  5DM7 S;  1QRT A;  1QRS A;  4WFN S;  1ZJW A;  1QTQ A;  1DFU P;  5JVH S;  4WFB S;  4IOC S;  3AII A;  4H3S A;  3DLL S;  1GTS A;  5GAH W;  1QRU A;  1EUQ A;  1B75 A;  2RD2 A;  3PIO S;  1EXD A;  2ZJQ S;  4U67 S;  4JYZ A;  5BNZ A;  4IOA S;  5IZN A;  1NYL A;  3PIP S;  1GTR A;  4WCE S;  3J7Z V;  5DM6 S;  1EUY A;  4IO9 S;  4UY8 8;  1O0B A;  5GAG W;  1FEU A;  4P2B A;  3CF5 S;  5HL7 S;  2ZJR S;  1D6K A;  2ZJP S;  5JVG S;  5GAE W;  1O0C A;  4WFA S;  4JXX A;  2HZ7 A;  4WF9 S; 
#chains in the Genus database with same CATH topology
 3M4O C;  2E2H C;  4XLN A;  4A3G C;  1QRT A;  2R7Z C;  4H3S A;  1GTS A;  1QRU A;  4LK0 A;  4C3J C;  2KXY A;  2YU9 C;  5C44 C;  2L5N A;  4C3I C;  3GTG C;  4MQ9 A;  3GTM C;  1ZYR A;  4BY7 C;  3EQL A;  4J3C A;  2R93 C;  4MEX A;  4BY1 C;  1EXD A;  3GTK C;  3H3V D;  4YFX A;  3PIP S;  3RZO C;  2PIC A;  4OIO A;  4WCE S;  4A3E C;  3CQZ C;  4Y52 C;  3FKI C;  1I3Q C;  3HOZ C;  5DM6 S;  1EUY A;  4IO9 S;  2NVY C;  3HOV C;  3M3Y C;  4A3J C;  3KW2 A;  1K83 C;  4A3D C;  4P2B A;  2PPB A;  4G7Z A;  3CZB A;  2NVX C;  1SMY A;  4BXX C;  4LK1 A;  2KQ1 A;  5JVG S;  3W2V B;  4JXX A;  2HZ7 A;  4WF9 S;  2PA8 D;  3GTQ C;  1VHK A;  2E2I C;  5DM7 S;  5HQH A;  1QTQ A;  1BDF A;  3HOY C;  1DFU P;  3S14 C;  3I4M C;  4L69 A;  3DLL S;  1NXZ A;  3S1M C;  1EUQ A;  4X6A C;  1TWF C;  4ZH4 A;  2B63 C;  2NVT C;  3HOU C;  3S16 C;  1Z85 A;  2AE0 X;  5D4D A;  4OIR A;  5FLM C;  2WAQ D;  1TWA C;  4JK1 A;  4LLG A;  4JYZ A;  2O5I A;  4A3L C;  2G6G A;  4A3F C;  5IP7 C;  3PO3 C;  2CW0 A;  2Y0S D;  3S2D C;  1SFO C;  4YFK A;  4A3K C;  2PI8 A;  3GTL C;  3W2W B;  3GTO C;  4UY8 8;  4YFN A;  3GTP C;  5GAG W;  4E8B A;  4G7O A;  1FEU A;  1VHY A;  2Z0Y A;  3HOX C;  2JA6 C;  1I6H C;  2EGV A;  5C4X C;  4WFA S;  4H4K A;  4NOI A;  4AYB D;  2RE8 A;  4Q4Z A;  1TWH C;  5GAD W;  2BE5 A;  2NVQ C;  4QJV A;  4XSZ A;  1QRS A;  1ZJW A;  4KMU A;  4BBS C;  3I4N C;  4IOC S;  4A3C C;  5GAH W;  3S1Q C;  2CX8 A;  1I6V A;  3WOD A;  3S1N C;  1TWG C;  2RD2 A;  1YNN A;  5IYD C;  3RZD C;  4YG2 A;  4OIN A;  4G7H A;  4V19 4;  3X1L B;  3S1R C;  2PNW A;  5BNZ A;  4IOA S;  4BBR C;  5TMF A;  2G5D A;  4MEY A;  2O5J A;  3J7Z V;  1R9T C;  2A69 A;  2E2J C;  1O0B A;  4C2M C;  4C3H C;  3PO2 C;  4KN7 A;  2PJJ A;  3CF5 S;  2VUM C;  2ZJP S;  1WCM C;  1YNJ A;  3K7A C;  4XLP A;  3H0G C;  5IYB C;  2KPU A;  1O0C A;  2PMZ D;  1I50 C;  1UDX A;  4JXZ A;  4OIP A;  5TMC A;  3S17 C;  5C4J C;  1TWC C;  4WFN S;  2WB1 D;  4WFB S;  3AII A;  2NWA A;  1Y1W C;  2A6H A;  2JA7 C;  2JA8 C;  1B75 A;  5C3E C;  4Y7N C;  3PIO S;  4A93 C;  2EGW A;  5IYC C;  4A3B C;  5IP9 C;  2ZJQ S;  4U67 S;  2R92 C;  1Y1V C;  3LYW A;  3S15 C;  3GTJ C;  5IZN A;  1NYL A;  1GTR A;  3DXJ A;  2A6E A;  3HOW C;  3HKZ D;  4A3I C;  3S2H C;  2L3U A;  2GAE A;  1V6Z A;  2A68 A;  4QIW D;  4XSX A;  4GZY A;  4A3M C;  5HL7 S;  2ZJR S;  4Q5S A;  4LJZ A;  4OIQ A;  1IW7 A;  1HQM A;  5GAE W;  1D6K A;  4KN4 A;  5JVH S;  2JA5 C; 
#chains in the Genus database with same CATH homology
 2RE8 A;  4JXZ A;  5GAD W;  5DM7 S;  1QRT A;  1QRS A;  4WFN S;  1ZJW A;  1QTQ A;  1DFU P;  4JXX A;  5JVH S;  4WFB S;  4IOC S;  3AII A;  4H3S A;  1UDX A;  3DLL S;  5GAH W;  1GTS A;  1QRU A;  1EUQ A;  2HZ7 A;  1B75 A;  2RD2 A;  3PIO S;  4V19 4;  3X1L B;  1EXD A;  2ZJQ S;  4U67 S;  4JYZ A;  5BNZ A;  4IOA S;  5IZN A;  1NYL A;  3PIP S;  1GTR A;  4WCE S;  3J7Z V;  5DM6 S;  1EUY A;  3W2W B;  4IO9 S;  4UY8 8;  1O0B A;  5GAG W;  1FEU A;  4P2B A;  3CF5 S;  5HL7 S;  2ZJR S;  1D6K A;  2ZJP S;  5JVG S;  5GAE W;  1O0C A;  4WFA S;  3W2V B;  4H4K A;  4WF9 S; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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