2HA8A

Methyltransferase domain of human tar (hiv-1) rna binding protein 1
Total Genus 57
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
57
Knots found
sequence length
159
structure length
159
Chain Sequence
LGKSISRLIVVASLIDKPTNLGGLCRTCEVFGASVLVVGSLQCISDKQFQHLSVSAEQWLPLVEVKPPQLIDYLQQKKTEGYTIIGVEQTAKSLDLTQYCFPEKSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQLLS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Rna binding protein
molecule keywords TAR (HIV-1) RNA loop binding protein
publication title The Crystal Structure of Methyltransferase Domain of Human TAR (HIV-1) RNA binding protein 1 in complex with S-adenosyl-L-homocystein.
rcsb
source organism Homo sapiens
total genus 57
structure length 159
sequence length 159
chains with identical sequence B
other databases KnotProt 2.0: K +31
ec nomenclature
pdb deposition date 2006-06-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00588 SpoU_methylase SpoU rRNA Methylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 2ha8A01
4YQ2A 4YQ4A 4YPYA 4YQJA 4YVHA 5GMCA 4YVKA 3AXZA 5D9FA 1UAMA 2CX8A 2O3AA 4YQKA 1X7OA 2HA8A 4H3YA 2QWVA 4YQIA 3ILKA 4YQ3A 4YQOA 4YQLA 1OY5A 4YQDA 5GMBA 5CO4A 3OINA 4CNGA 3BBEA 2EGWA 4KGNA 1O6DA 1UALA 3OIIA 4PZKA 4YQPA 3ONPA 4L69A 4J3CA 1MXIA 4YQ1A 4CNDA 4YQRA 3N4JA 3N4KA 3OIJA 4H3ZA 3QUVA 4CNFA 4YQAA 4YVJA 4YQTA 4YPXA 1V6ZA 1UAKA 4X3MA 4JAKA 2I6DA 3AIAA 1IPAA 1VHYA 4YQ7A 4YQNA 4IG6A 4YQ8A 4YVIA 3O7BA 3BBHA 4YPWA 4X3LA 2QMMA 4MCBA 4JALA 3KTYA 4YQ0A 3BBDA 1VHKA 1V2XA 3NK6A 4YQ6A 4YQ9A 2V3KA 3KW2A 4YQBA 4YQQA 4FAKA 3DCMX 3NK7A 1K3RA 2YY8A 4YQ5A 3GYQA 3KNUA 4YQCA 1X7PA 1NXZA 1P9PA 5FAIA 3L8UA 4RG1A 1UAJA 1TO0A 3E5YA 4MCDA 4MCCA 1NS5A 4YQGA 1J85A 4CNEA 2Z0YA 4E8BA 5GM8A 2EGVA 3AI9X 2V3JA 3IC6A 4YVGA 1ZJRA 1Z85A 1GZ0A 4KDZA 4YQSA 4YPZA 3IEFA 3KY7A 4XBOA 1VH0A
chains in the Genus database with same CATH superfamily
4YQ2A 4YQ4A 4YPYA 4JWHA 4YQJA 4YVHA 5GMCA 4YVKA 3AXZA 5D9FA 1UAMA 2CX8A 2O3AA 4YQKA 4JWGA 1X7OA 2HA8A 4H3YA 2QWVA 4YQIA 3ILKA 4YQ3A 4YQOA 4YQLA 1OY5A 4YQDA 5GMBA 5CO4A 3OINA 4CNGA 3BBEA 2EGWA 4KGNA 1O6DA 1UALA 3OIIA 4PZKA 4YQPA 3ONPA 4L69A 4J3CA 1MXIA 4YQ1A 4CNDA 4YQRA 3N4JA 3N4KA 3OIJA 4H3ZA 3QUVA 4CNFA 4YQAA 4YVJA 4YQTA 4YPXA 1V6ZA 1UAKA 4X3MA 4JAKA 2I6DA 3AIAA 1IPAA 1VHYA 4YQ7A 4YQNA 4IG6A 4YQ8A 4YVIA 3O7BA 3BBHA 4FMWA 4YPWA 2QMMA 4X3LA 4MCBA 4JALA 3KTYA 4YQ0A 3BBDA 1VHKA 1V2XA 3NK6A 4YQ6A 4YQ9A 4JWJA 2V3KA 3KW2A 4YQBA 4YQQA 4FAKA 3DCMX 3NK7A 1K3RA 2YY8A 4YQ5A 3GYQA 3KNUA 4YQCA 1X7PA 1NXZA 1P9PA 5FAIA 3L8UA 4RG1A 1UAJA 1TO0A 3E5YA 4MCDA 4MCCA 1NS5A 4YQGA 1J85A 4CNEA 2Z0YA 4E8BA 5GM8A 2EGVA 3AI9X 2V3JA 3IC6A 4YVGA 1ZJRA 1Z85A 1GZ0A 4JWFA 4KDZA 4YQSA 4YPZA 3IEFA 3KY7A 4XBOA 1VH0A
chains in the Genus database with same CATH topology
4YQ2A 4YQ4A 4YPYA 4JWHA 4YQJA 4YVHA 5GMCA 4YVKA 3AXZA 5D9FA 1UAMA 2CX8A 2O3AA 4YQKA 4JWGA 1X7OA 2HA8A 4H3YA 2QWVA 4YQIA 3ILKA 4YQ3A 4YQOA 4YQLA 1OY5A 4YQDA 5GMBA 5CO4A 3OINA 4CNGA 3BBEA 2EGWA 4KGNA 1O6DA 1UALA 3OIIA 4PZKA 4YQPA 3ONPA 4L69A 4J3CA 1MXIA 4YQ1A 4CNDA 4YQRA 3N4JA 3N4KA 3OIJA 4H3ZA 3QUVA 4CNFA 4YQAA 4YVJA 4YQTA 4YPXA 1V6ZA 1UAKA 4X3MA 4JAKA 2I6DA 3AIAA 1IPAA 1VHYA 4YQ7A 4YQNA 4IG6A 4YQ8A 4YVIA 3O7BA 3BBHA 4FMWA 4YPWA 2QMMA 4X3LA 4MCBA 4JALA 3KTYA 4YQ0A 3BBDA 1VHKA 1V2XA 3NK6A 4YQ6A 4YQ9A 4JWJA 2V3KA 3KW2A 4YQBA 4YQQA 4FAKA 3DCMX 3NK7A 1K3RA 2YY8A 4YQ5A 3GYQA 3KNUA 4YQCA 1X7PA 1NXZA 1P9PA 5FAIA 3L8UA 4RG1A 1UAJA 1TO0A 3E5YA 4MCDA 4MCCA 1NS5A 4YQGA 1J85A 4CNEA 2Z0YA 4E8BA 5GM8A 2EGVA 3AI9X 2V3JA 3IC6A 4YVGA 1ZJRA 1Z85A 1GZ0A 4JWFA 4KDZA 4YQSA 4YPZA 3IEFA 3KY7A 4XBOA 1VH0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4YQ2 A;  4YQ4 A;  4YPY A;  4YQJ A;  4YVH A;  5GMC A;  4YVK A;  3AXZ A;  5D9F A;  1UAM A;  2CX8 A;  2O3A A;  4YQK A;  1X7O A;  2HA8 A;  4H3Y A;  2QWV A;  4YQI A;  3ILK A;  4YQ3 A;  4YQO A;  4YQL A;  1OY5 A;  4YQD A;  5GMB A;  5CO4 A;  3OIN A;  4CNG A;  3BBE A;  2EGW A;  4KGN A;  1O6D A;  1UAL A;  3OII A;  4PZK A;  4YQP A;  3ONP A;  4L69 A;  4J3C A;  1MXI A;  4YQ1 A;  4CND A;  4YQR A;  3N4J A;  3N4K A;  3OIJ A;  4H3Z A;  3QUV A;  4CNF A;  4YQA A;  4YVJ A;  4YQT A;  4YPX A;  1V6Z A;  1UAK A;  4X3M A;  4JAK A;  2I6D A;  3AIA A;  1IPA A;  1VHY A;  4YQ7 A;  4YQN A;  4IG6 A;  4YQ8 A;  4YVI A;  3O7B A;  3BBH A;  4YPW A;  4X3L A;  2QMM A;  4MCB A;  4JAL A;  3KTY A;  4YQ0 A;  3BBD A;  1VHK A;  1V2X A;  3NK6 A;  4YQ6 A;  4YQ9 A;  2V3K A;  3KW2 A;  4YQB A;  4YQQ A;  4FAK A;  3DCM X;  3NK7 A;  1K3R A;  2YY8 A;  4YQ5 A;  3GYQ A;  3KNU A;  4YQC A;  1X7P A;  1NXZ A;  1P9P A;  5FAI A;  3L8U A;  4RG1 A;  1UAJ A;  1TO0 A;  3E5Y A;  4MCD A;  4MCC A;  1NS5 A;  4YQG A;  1J85 A;  4CNE A;  2Z0Y A;  4E8B A;  5GM8 A;  2EGV A;  3AI9 X;  2V3J A;  3IC6 A;  4YVG A;  1ZJR A;  1Z85 A;  1GZ0 A;  4KDZ A;  4YQS A;  4YPZ A;  3IEF A;  3KY7 A;  4XBO A;  1VH0 A; 
#chains in the Genus database with same CATH topology
 4YQ2 A;  4YQ4 A;  4YPY A;  4JWH A;  4YQJ A;  4YVH A;  5GMC A;  4YVK A;  3AXZ A;  5D9F A;  1UAM A;  2CX8 A;  2O3A A;  4YQK A;  4JWG A;  1X7O A;  2HA8 A;  4H3Y A;  2QWV A;  4YQI A;  3ILK A;  4YQ3 A;  4YQO A;  4YQL A;  1OY5 A;  4YQD A;  5GMB A;  5CO4 A;  3OIN A;  4CNG A;  3BBE A;  2EGW A;  4KGN A;  1O6D A;  1UAL A;  3OII A;  4PZK A;  4YQP A;  3ONP A;  4L69 A;  4J3C A;  1MXI A;  4YQ1 A;  4CND A;  4YQR A;  3N4J A;  3N4K A;  3OIJ A;  4H3Z A;  3QUV A;  4CNF A;  4YQA A;  4YVJ A;  4YQT A;  4YPX A;  1V6Z A;  1UAK A;  4X3M A;  4JAK A;  2I6D A;  3AIA A;  1IPA A;  1VHY A;  4YQ7 A;  4YQN A;  4IG6 A;  4YQ8 A;  4YVI A;  3O7B A;  3BBH A;  4FMW A;  4YPW A;  2QMM A;  4X3L A;  4MCB A;  4JAL A;  3KTY A;  4YQ0 A;  3BBD A;  1VHK A;  1V2X A;  3NK6 A;  4YQ6 A;  4YQ9 A;  4JWJ A;  2V3K A;  3KW2 A;  4YQB A;  4YQQ A;  4FAK A;  3DCM X;  3NK7 A;  1K3R A;  2YY8 A;  4YQ5 A;  3GYQ A;  3KNU A;  4YQC A;  1X7P A;  1NXZ A;  1P9P A;  5FAI A;  3L8U A;  4RG1 A;  1UAJ A;  1TO0 A;  3E5Y A;  4MCD A;  4MCC A;  1NS5 A;  4YQG A;  1J85 A;  4CNE A;  2Z0Y A;  4E8B A;  5GM8 A;  2EGV A;  3AI9 X;  2V3J A;  3IC6 A;  4YVG A;  1ZJR A;  1Z85 A;  1GZ0 A;  4JWF A;  4KDZ A;  4YQS A;  4YPZ A;  3IEF A;  3KY7 A;  4XBO A;  1VH0 A; 
#chains in the Genus database with same CATH homology
 4YQ2 A;  4YQ4 A;  4YPY A;  4JWH A;  4YQJ A;  4YVH A;  5GMC A;  4YVK A;  3AXZ A;  5D9F A;  1UAM A;  2CX8 A;  2O3A A;  4YQK A;  4JWG A;  1X7O A;  2HA8 A;  4H3Y A;  2QWV A;  4YQI A;  3ILK A;  4YQ3 A;  4YQO A;  4YQL A;  1OY5 A;  4YQD A;  5GMB A;  5CO4 A;  3OIN A;  4CNG A;  3BBE A;  2EGW A;  4KGN A;  1O6D A;  1UAL A;  3OII A;  4PZK A;  4YQP A;  3ONP A;  4L69 A;  4J3C A;  1MXI A;  4YQ1 A;  4CND A;  4YQR A;  3N4J A;  3N4K A;  3OIJ A;  4H3Z A;  3QUV A;  4CNF A;  4YQA A;  4YVJ A;  4YQT A;  4YPX A;  1V6Z A;  1UAK A;  4X3M A;  4JAK A;  2I6D A;  3AIA A;  1IPA A;  1VHY A;  4YQ7 A;  4YQN A;  4IG6 A;  4YQ8 A;  4YVI A;  3O7B A;  3BBH A;  4FMW A;  4YPW A;  2QMM A;  4X3L A;  4MCB A;  4JAL A;  3KTY A;  4YQ0 A;  3BBD A;  1VHK A;  1V2X A;  3NK6 A;  4YQ6 A;  4YQ9 A;  4JWJ A;  2V3K A;  3KW2 A;  4YQB A;  4YQQ A;  4FAK A;  3DCM X;  3NK7 A;  1K3R A;  2YY8 A;  4YQ5 A;  3GYQ A;  3KNU A;  4YQC A;  1X7P A;  1NXZ A;  1P9P A;  5FAI A;  3L8U A;  4RG1 A;  1UAJ A;  1TO0 A;  3E5Y A;  4MCD A;  4MCC A;  1NS5 A;  4YQG A;  1J85 A;  4CNE A;  2Z0Y A;  4E8B A;  5GM8 A;  2EGV A;  3AI9 X;  2V3J A;  3IC6 A;  4YVG A;  1ZJR A;  1Z85 A;  1GZ0 A;  4JWF A;  4KDZ A;  4YQS A;  4YPZ A;  3IEF A;  3KY7 A;  4XBO A;  1VH0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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