2HJBD

Crystal structure of alcaligenes faecalis aadh in complex with p-methoxybenzylamine
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
Knots found
sequence length
110
structure length
109
Chain Sequence
EVNSCDYWRHCAVDGFLCSCCGGTTTTCPPGSTPSPISIGTCHNPHDGKDYLISYHDCCGKTACGRCQCNTQTRERPGYEFFLHNDVNWCMANENSTFHCTTSVLVGLA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Aromatic amine dehydrogenase
publication title Isotope effects reveal that para-substituted benzylamines are poor reactivity probes of the quinoprotein mechanism for aromatic amine dehydrogenase.
pubmed doi rcsb
total genus 25
structure length 109
sequence length 110
chains with identical sequence H
other databases KnotProt 2.0: K
ec nomenclature ec 1.4.9.2: Aralkylamine dehydrogenase (azurin).
pdb deposition date 2006-06-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF02975 Me-amine-dh_L Methylamine dehydrogenase, L chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.30.10 Mainly Beta Sandwich Electron Transport Ethylamine Dehydrogenase Methylamine/Aralkylamine dehydrogenase light chain 2hjbD00
2OIZD 2MADL 1MG3B 3SVWC 3RN0C 4FA9C 2HKMD 4FA4C 2IUPD 4FA1C 2GC7B 2AGLD 1MDAL 1MG2B 4FA5C 2HKRD 3L4MC 3SXTC 2HXCD 2HJBD 2J55L 3PXTC 2AH1D 4Y5RC 2AGYD 4FAVC 2IAAB 2I0RD 2AGXD 2H3XB 2MTAL 2Q7QD 2I0SD 3RMZC 2BBKL 3PXWC 1MAFL 3SWSC 4FANC 2OK6D 2I0TD 4L3HC 2OJYD 2AH0D 3RLMC 3SJLC 3PXSC 4L3GC 3ORVC 3L4OC 2OK4D 2J57K 2IUQD 4L1QC 4O1QC 3RN1C 2HJ4D 2J56L 4K3IC 3SLEC 2GC4B 1MAEL 2IURD 3C75L 2H47B 2AGZD 4FB1C 2IUVD 2AGWD
chains in the Genus database with same CATH superfamily
2OIZD 2MADL 1MG3B 3SVWC 3RN0C 4FA9C 2HKMD 4FA4C 2IUPD 4FA1C 2GC7B 2AGLD 1MDAL 1MG2B 4FA5C 2HKRD 3L4MC 3SXTC 2HXCD 2HJBD 2J55L 3PXTC 2AH1D 4Y5RC 2AGYD 4FAVC 2IAAB 2I0RD 2AGXD 2H3XB 2MTAL 2Q7QD 2I0SD 3RMZC 2BBKL 3PXWC 1MAFL 3SWSC 4FANC 2OK6D 2I0TD 4L3HC 2OJYD 2AH0D 3RLMC 3SJLC 3PXSC 4L3GC 3ORVC 3L4OC 2OK4D 2J57K 2IUQD 4L1QC 4O1QC 3RN1C 2HJ4D 2J56L 4K3IC 3SLEC 2GC4B 1MAEL 2IURD 3C75L 2H47B 2AGZD 4FB1C 2IUVD 2AGWD
chains in the Genus database with same CATH topology
2OIZD 2MADL 1MG3B 3SVWC 3RN0C 4FA9C 2HKMD 4FA4C 2IUPD 4FA1C 2GC7B 2AGLD 1MDAL 1MG2B 4FA5C 2HKRD 3L4MC 3SXTC 2HXCD 2HJBD 2J55L 3PXTC 2AH1D 4Y5RC 2AGYD 4FAVC 2IAAB 2I0RD 2AGXD 2H3XB 2MTAL 2Q7QD 2I0SD 3RMZC 2BBKL 3PXWC 1MAFL 3SWSC 4FANC 2OK6D 2I0TD 4L3HC 2OJYD 2AH0D 3RLMC 3SJLC 3PXSC 4L3GC 3ORVC 3L4OC 2OK4D 2J57K 2IUQD 4L1QC 4O1QC 3RN1C 2HJ4D 2J56L 4K3IC 3SLEC 2GC4B 1MAEL 2IURD 3C75L 2H47B 2AGZD 4FB1C 2IUVD 2AGWD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OIZ D;  2MAD L;  1MG3 B;  3SVW C;  3RN0 C;  4FA9 C;  2HKM D;  4FA4 C;  2IUP D;  4FA1 C;  2GC7 B;  2AGL D;  1MDA L;  1MG2 B;  4FA5 C;  2HKR D;  3L4M C;  3SXT C;  2HXC D;  2HJB D;  2J55 L;  3PXT C;  2AH1 D;  4Y5R C;  2AGY D;  4FAV C;  2IAA B;  2I0R D;  2AGX D;  2H3X B;  2MTA L;  2Q7Q D;  2I0S D;  3RMZ C;  2BBK L;  3PXW C;  1MAF L;  3SWS C;  4FAN C;  2OK6 D;  2I0T D;  4L3H C;  2OJY D;  2AH0 D;  3RLM C;  3SJL C;  3PXS C;  4L3G C;  3ORV C;  3L4O C;  2OK4 D;  2J57 K;  2IUQ D;  4L1Q C;  4O1Q C;  3RN1 C;  2HJ4 D;  2J56 L;  4K3I C;  3SLE C;  2GC4 B;  1MAE L;  2IUR D;  3C75 L;  2H47 B;  2AGZ D;  4FB1 C;  2IUV D;  2AGW D; 
#chains in the Genus database with same CATH topology
 2OIZ D;  2MAD L;  1MG3 B;  3SVW C;  3RN0 C;  4FA9 C;  2HKM D;  4FA4 C;  2IUP D;  4FA1 C;  2GC7 B;  2AGL D;  1MDA L;  1MG2 B;  4FA5 C;  2HKR D;  3L4M C;  3SXT C;  2HXC D;  2HJB D;  2J55 L;  3PXT C;  2AH1 D;  4Y5R C;  2AGY D;  4FAV C;  2IAA B;  2I0R D;  2AGX D;  2H3X B;  2MTA L;  2Q7Q D;  2I0S D;  3RMZ C;  2BBK L;  3PXW C;  1MAF L;  3SWS C;  4FAN C;  2OK6 D;  2I0T D;  4L3H C;  2OJY D;  2AH0 D;  3RLM C;  3SJL C;  3PXS C;  4L3G C;  3ORV C;  3L4O C;  2OK4 D;  2J57 K;  2IUQ D;  4L1Q C;  4O1Q C;  3RN1 C;  2HJ4 D;  2J56 L;  4K3I C;  3SLE C;  2GC4 B;  1MAE L;  2IUR D;  3C75 L;  2H47 B;  2AGZ D;  4FB1 C;  2IUV D;  2AGW D; 
#chains in the Genus database with same CATH homology
 2OIZ D;  2MAD L;  1MG3 B;  3SVW C;  3RN0 C;  4FA9 C;  2HKM D;  4FA4 C;  2IUP D;  4FA1 C;  2GC7 B;  2AGL D;  1MDA L;  1MG2 B;  4FA5 C;  2HKR D;  3L4M C;  3SXT C;  2HXC D;  2HJB D;  2J55 L;  3PXT C;  2AH1 D;  4Y5R C;  2AGY D;  4FAV C;  2IAA B;  2I0R D;  2AGX D;  2H3X B;  2MTA L;  2Q7Q D;  2I0S D;  3RMZ C;  2BBK L;  3PXW C;  1MAF L;  3SWS C;  4FAN C;  2OK6 D;  2I0T D;  4L3H C;  2OJY D;  2AH0 D;  3RLM C;  3SJL C;  3PXS C;  4L3G C;  3ORV C;  3L4O C;  2OK4 D;  2J57 K;  2IUQ D;  4L1Q C;  4O1Q C;  3RN1 C;  2HJ4 D;  2J56 L;  4K3I C;  3SLE C;  2GC4 B;  1MAE L;  2IUR D;  3C75 L;  2H47 B;  2AGZ D;  4FB1 C;  2IUV D;  2AGW D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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