2IUPD

Crystal structure of dithionite-reduced aromatic amine dehydrogenase (aadh) from alcaligenes faecalis
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
Knots found
sequence length
109
structure length
108
Chain Sequence
EVNSCDYWRHCAVDGFLCSCCGGTTTTCPPGSTPSPISIGTCHNPHDGKDYLISYHDCCGKTACGRCQCNTQTRERPGYEFFLHNDVNWCMANENSTFHCTTSVLVGL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords AROMATIC AMINE DEHYDROGENASE ALPHA SUBUNIT
publication title Atomic level insight into the oxidative half-reaction of aromatic amine dehydrogenase.
pubmed doi rcsb
total genus 26
structure length 108
sequence length 109
chains with identical sequence H
other databases KnotProt 2.0: K
ec nomenclature ec 1.4.9.2: Aralkylamine dehydrogenase (azurin).
pdb deposition date 2006-06-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF02975 Me-amine-dh_L Methylamine dehydrogenase, L chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.30.10 Mainly Beta Sandwich Electron Transport Ethylamine Dehydrogenase Methylamine/Aralkylamine dehydrogenase light chain 2iupD00
2IUVD 2AGZD 4FA9C 4FANC 3SWSC 4FA4C 2HJBD 2HXCD 2AGWD 2J55L 2MTAL 2IUQD 2AGXD 2J56L 2I0TD 3SLEC 1MDAL 1MG2B 4FA1C 2OIZD 3RMZC 2AGLD 2H47B 2I0SD 4K3IC 2AGYD 2H3XB 3PXTC 2MADL 4O1QC 3RN0C 4FB1C 2GC7B 2HKRD 3L4MC 4Y5RC 3ORVC 2J57K 1MG3B 2HKMD 2IAAB 4L3HC 2AH1D 2OK4D 2I0RD 3PXSC 3SXTC 3RN1C 3PXWC 2OJYD 2GC4B 4L3GC 4FAVC 1MAEL 4FA5C 2BBKL 3C75L 1MAFL 2Q7QD 4L1QC 3SJLC 3SVWC 2AH0D 2IUPD 3L4OC 2IURD 2OK6D 3RLMC 2HJ4D
chains in the Genus database with same CATH superfamily
2IUVD 2AGZD 4FA9C 4FANC 3SWSC 4FA4C 2HJBD 2HXCD 2AGWD 2J55L 2MTAL 2IUQD 2AGXD 2J56L 2I0TD 3SLEC 1MDAL 1MG2B 4FA1C 2OIZD 3RMZC 2AGLD 2H47B 2I0SD 4K3IC 2AGYD 2H3XB 3PXTC 2MADL 4O1QC 3RN0C 4FB1C 2GC7B 2HKRD 3L4MC 4Y5RC 3ORVC 2J57K 1MG3B 2HKMD 2IAAB 4L3HC 2AH1D 2OK4D 2I0RD 3PXSC 3SXTC 3RN1C 3PXWC 2OJYD 2GC4B 4L3GC 4FAVC 1MAEL 4FA5C 2BBKL 3C75L 1MAFL 2Q7QD 4L1QC 3SJLC 3SVWC 2AH0D 2IUPD 3L4OC 2IURD 2OK6D 3RLMC 2HJ4D
chains in the Genus database with same CATH topology
2IUVD 2AGZD 4FA9C 4FANC 3SWSC 4FA4C 2HJBD 2HXCD 2AGWD 2J55L 2MTAL 2IUQD 2AGXD 2J56L 2I0TD 3SLEC 1MDAL 1MG2B 4FA1C 2OIZD 3RMZC 2AGLD 2H47B 2I0SD 4K3IC 2AGYD 2H3XB 3PXTC 2MADL 4O1QC 3RN0C 4FB1C 2GC7B 2HKRD 3L4MC 4Y5RC 3ORVC 2J57K 1MG3B 2HKMD 2IAAB 4L3HC 2AH1D 2OK4D 2I0RD 3PXSC 3SXTC 3RN1C 3PXWC 2OJYD 2GC4B 4L3GC 4FAVC 1MAEL 4FA5C 2BBKL 3C75L 1MAFL 2Q7QD 4L1QC 3SJLC 3SVWC 2AH0D 2IUPD 3L4OC 2IURD 2OK6D 3RLMC 2HJ4D
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2IUV D;  2AGZ D;  4FA9 C;  4FAN C;  3SWS C;  4FA4 C;  2HJB D;  2HXC D;  2AGW D;  2J55 L;  2MTA L;  2IUQ D;  2AGX D;  2J56 L;  2I0T D;  3SLE C;  1MDA L;  1MG2 B;  4FA1 C;  2OIZ D;  3RMZ C;  2AGL D;  2H47 B;  2I0S D;  4K3I C;  2AGY D;  2H3X B;  3PXT C;  2MAD L;  4O1Q C;  3RN0 C;  4FB1 C;  2GC7 B;  2HKR D;  3L4M C;  4Y5R C;  3ORV C;  2J57 K;  1MG3 B;  2HKM D;  2IAA B;  4L3H C;  2AH1 D;  2OK4 D;  2I0R D;  3PXS C;  3SXT C;  3RN1 C;  3PXW C;  2OJY D;  2GC4 B;  4L3G C;  4FAV C;  1MAE L;  4FA5 C;  2BBK L;  3C75 L;  1MAF L;  2Q7Q D;  4L1Q C;  3SJL C;  3SVW C;  2AH0 D;  2IUP D;  3L4O C;  2IUR D;  2OK6 D;  3RLM C;  2HJ4 D; 
#chains in the Genus database with same CATH topology
 2IUV D;  2AGZ D;  4FA9 C;  4FAN C;  3SWS C;  4FA4 C;  2HJB D;  2HXC D;  2AGW D;  2J55 L;  2MTA L;  2IUQ D;  2AGX D;  2J56 L;  2I0T D;  3SLE C;  1MDA L;  1MG2 B;  4FA1 C;  2OIZ D;  3RMZ C;  2AGL D;  2H47 B;  2I0S D;  4K3I C;  2AGY D;  2H3X B;  3PXT C;  2MAD L;  4O1Q C;  3RN0 C;  4FB1 C;  2GC7 B;  2HKR D;  3L4M C;  4Y5R C;  3ORV C;  2J57 K;  1MG3 B;  2HKM D;  2IAA B;  4L3H C;  2AH1 D;  2OK4 D;  2I0R D;  3PXS C;  3SXT C;  3RN1 C;  3PXW C;  2OJY D;  2GC4 B;  4L3G C;  4FAV C;  1MAE L;  4FA5 C;  2BBK L;  3C75 L;  1MAF L;  2Q7Q D;  4L1Q C;  3SJL C;  3SVW C;  2AH0 D;  2IUP D;  3L4O C;  2IUR D;  2OK6 D;  3RLM C;  2HJ4 D; 
#chains in the Genus database with same CATH homology
 2IUV D;  2AGZ D;  4FA9 C;  4FAN C;  3SWS C;  4FA4 C;  2HJB D;  2HXC D;  2AGW D;  2J55 L;  2MTA L;  2IUQ D;  2AGX D;  2J56 L;  2I0T D;  3SLE C;  1MDA L;  1MG2 B;  4FA1 C;  2OIZ D;  3RMZ C;  2AGL D;  2H47 B;  2I0S D;  4K3I C;  2AGY D;  2H3X B;  3PXT C;  2MAD L;  4O1Q C;  3RN0 C;  4FB1 C;  2GC7 B;  2HKR D;  3L4M C;  4Y5R C;  3ORV C;  2J57 K;  1MG3 B;  2HKM D;  2IAA B;  4L3H C;  2AH1 D;  2OK4 D;  2I0R D;  3PXS C;  3SXT C;  3RN1 C;  3PXW C;  2OJY D;  2GC4 B;  4L3G C;  4FAV C;  1MAE L;  4FA5 C;  2BBK L;  3C75 L;  1MAF L;  2Q7Q D;  4L1Q C;  3SJL C;  3SVW C;  2AH0 D;  2IUP D;  3L4O C;  2IUR D;  2OK6 D;  3RLM C;  2HJ4 D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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